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PMID: 3550697 Published · ppublish English Journal Article Research Support, Non-U.S. Gov't

Analysis of E. coli promoter sequences.

Nucleic acids research ·Vol. 15 ·No. 5 ·1987-03-11 ·Pages 2343-61

Harley CB, Reynolds RP

Abstract

We have compiled and analyzed 263 promoters with known transcriptional start points for E. coli genes. Promoter elements (-35 hexamer, -10 hexamer, and spacing between these regions) were aligned by a program which selects the arrangement consistent with the start point and statistically most homologous to a reference list of promoters. The initial reference list was that of Hawley and McClure (Nucl. Acids Res. 11, 2237-2255, 1983). Alignment of the complete list was used for reference until successive analyses did not alter the structure of the list. In the final compilation, all bases in the -35 (TTGACA) and -10 (TATAAT) hexamers were highly conserved, 92% of promoters had inter-region spacing of 17 +/- 1 bp, and 75% of the uniquely defined start points initiated 7 +/- 1 bases downstream of the -10 region. The consensus sequence of promoters with inter-region spacing of 16, 17 or 18 bp did not differ. This compilation and analysis should be useful for studies of promoter structure and function and for programs which identify potential promoter sequences.

MeSH Terms
Base Sequence Escherichia coli/genetics Genes, Bacterial Promoter Regions, Genetic Transcription, Genetic
Authors & Affiliations
2 authors, click to expand affiliations / ORCID
Harley C B
Reynolds R P
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Article Info
Journal
Nucleic acids research
Abbr.
Nucleic Acids Res
ISSN
0305-1048
DOI
10.1093/nar/15.5.2343
Published
1987-03-11
Pages
2343-61
Language
English
Region
England
NLM ID
0411011
PMCID
PMC340638
Subset
IM
External Links
PubMed source DOI: 10.1093/nar/15.5.2343 PMC Full Text View journal details
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