Home LiteratureArticle Details
PMID: 384366 Published · ppublish English Journal Article Research Support, U.S. Gov't, Non-P.H.S. Research Support, U.S. Gov't, P.H.S.

Characterizing wild-type and mutant promoters of the tetracycline resistance gene in pBR313.

Nucleic acids research ·Vol. 6 ·No. 10 ·1979-07-25 ·Pages 3267-87

Rodriguez RL, West RW, Heyneker HL, Bolivar F, Boyer HW

Abstract

By employing a system of RNA polymerase binding and restriction endonuclease digestion, we demonstrate that the region in and around the Hind III site of pBR313 and pBR322 is the promoter for the tetracycline (Tc) resistance gene(s). Furthermore, it is shown that this region was transferred intact from pSC101 during the construction of the latter plasmids. The in vitro insertion of a few base pairs at the Hind III site produces a series of "down" promoter mutations in which the level of in vivo Tc resistance is reduced. Sequence analysis of the various promoter mutations revealed significant base pair rearrangements in the region between -40 and -12 of the promoter. While these base alterations do not appear to affect the firm binding of RNA polymerase, they do affect the ability of mutant promoters to initiate transcription. These observations suggest that the region from -40 to -12, previously designated as the "recognition region", is actually involved in the process of initiation of transcription.

MeSH Terms
Base Sequence DNA Restriction Enzymes DNA-Directed RNA Polymerases/metabolism Drug Resistance, Microbial Escherichia coli/metabolism Mutation/drug effects Plasmids Tetracycline/pharmacology
Chemicals
DNA-Directed RNA Polymerases DNA Restriction Enzymes Tetracycline
Authors & Affiliations
5 authors, click to expand affiliations / ORCID
Rodriguez R L
West R W
Heyneker H L
Bolivar F
Boyer H W
References (38)
38 references, click to expand
  1. Utilization of promoter and terminator sites on bacteriophage T7 DNA by RNA polymerases from a variety of bacterial orders.
    Cell. 1979 Jan;16(1):97-109 PMID: 421272
  2. Eukaryotic DNA fragments which act as promoters for a plasmid gene.
    Nature. 1979 Jan 25;277(5694):324-5 PMID: 368644
  3. In vitro analysis of the Escherichia coli RNA polymerase interaction with wild-type and mutant lactose promoters.
    J Mol Biol. 1978 Nov 15;125(4):467-90 PMID: 368341
  4. A computer aided oligonucleotide analysis provides a model sequence for RNA polymerase-promoter recognition in E.coli.
    Nucleic Acids Res. 1978 Oct;5(10):3759-73 PMID: 364417
  5. DNA sequence for a low-level promoter of the lac repressor gene and an 'up' promoter mutation.
    Nature. 1978 Aug 24;274(5673):762-5 PMID: 355890
  6. Contacts between Escherichia coli RNA polymerase and a lac operon promoter.
    Proc Natl Acad Sci U S A. 1978 Nov;75(11):5314-8 PMID: 364474
  7. DNA regions essential for the function of a bacteriophage fd promoter.
    Nucleic Acids Res. 1977 Jul;4(7):2213-22 PMID: 909770
  8. Naturally occurring promoter down mutation: nucleotide sequence of the trp promoter/operator/leader region of Shigella dysenteriae 16.
    Proc Natl Acad Sci U S A. 1978 Nov;75(11):5580-4 PMID: 364484
  9. The expression of tetracycline resistance after insertion of foreign DNA fragments between the EcoRI and HindIII sites of the plasmid cloning vector pBR 322.
    Mol Gen Genet. 1978 Jul 25;163(3):301-5 PMID: 355856
  10. Construction and characterization of new cloning vehicles. II. A multipurpose cloning system.
    Gene. 1977;2(2):95-113 PMID: 344137
  11. Construction and characterization of new cloning vehicles. I. Ampicillin-resistant derivatives of the plasmid pMB9.
    Gene. 1977;2(2):75-93 PMID: 344136
  12. On the nature of tetracycline resistance controlled by the plasmid pSC101.
    Cell. 1978 Jan;13(1):73-81 PMID: 340050
  13. Construction and properties of recombinant plasmids containing the rII genes of bacteriophage T4.
    Mol Gen Genet. 1978 Feb 27;159(3):301-9 PMID: 345100
  14. Altered tetracycline resistance in pSC101 recombinant plasmids.
    Mol Gen Genet. 1977 Mar 16;151(3):327-31 PMID: 325378
  15. Revised interpretation of the origin of the pSC101 plasmid.
    J Bacteriol. 1977 Nov;132(2):734-7 PMID: 334752
  16. Origin of replication of pBR345 plasmid DNA.
    Proc Natl Acad Sci U S A. 1977 Dec;74(12):5265-9 PMID: 271952
  17. A new method for sequencing DNA.
    Proc Natl Acad Sci U S A. 1977 Feb;74(2):560-4 PMID: 265521
  18. A general method for the purification of restriction enzymes.
    Nucleic Acids Res. 1978 Jul;5(7):2373-80 PMID: 673857
  19. Construction of plasmids carrying the cI gene of bacteriophage lambda.
    Proc Natl Acad Sci U S A. 1976 Nov;73(11):4174-8 PMID: 1069307
  20. Synthetic lac operator DNA is functional in vivo.
    Nature. 1976 Oct 28;263(5580):748-52 PMID: 1069185
  21. Novel properties of a restriction endonuclease isolated from Haemophilus parahaemolyticus.
    Proc Natl Acad Sci U S A. 1976 Feb;73(2):293-7 PMID: 1061131
  22. Physical characterization and simultaneous purification of bacteriophage T4 induced polynucleotide kinase, polynucleotide ligase, and deoxyribonucleic acid polymerase.
    Biochemistry. 1973 Dec 4;12(25):5045-50 PMID: 4366077
  23. The selectivity of transcription.
    Annu Rev Biochem. 1974;43(0):721-75 PMID: 4605337
  24. Studies of ribonucleic acid chain initiation by Escherichia coli ribonucleic acid polymerase bound to T7 deoxyribonucleic acid. I. An assay for the rate and extent of ribonucleic acid chain initiation.
    J Biol Chem. 1974 May 25;249(10):2995-3001 PMID: 4598116
  25. Promoters are in the operators in phage lambda.
    Nature. 1974 May 17;249(454):221-3 PMID: 4598033
  26. Class of promotor sites for Escherichia coli DNA-dependent RNA polymerase.
    Nature. 1974 May 17;249(454):217-21 PMID: 4364358
  27. Nature of Col E 1 plasmid replication in Escherichia coli in the presence of the chloramphenicol.
    J Bacteriol. 1972 May;110(2):667-76 PMID: 4336693
  28. Restriction and modification of a self-complementary octanucleotide containing the EcoRI substrate.
    J Mol Biol. 1975 Dec 5;99(2):237-61 PMID: 173854
  29. Hyperproduction of the sigma subunit of RNA polymerase in a mutant of Escherichia coli.
    Mol Gen Genet. 1975 Nov 24;141(2):97-111 PMID: 1107814
  30. A procedure for the rapid, large-scall purification of Escherichia coli DNA-dependent RNA polymerase involving Polymin P precipitation and DNA-cellulose chromatography.
    Biochemistry. 1975 Oct 21;14(21):4634-8 PMID: 1101952
  31. Nucleotide sequence of an RNA polymerase binding site at an early T7 promoter.
    Proc Natl Acad Sci U S A. 1975 Mar;72(3):784-8 PMID: 1093168
  32. Genetic regulation: the Lac control region.
    Science. 1975 Jan 10;187(4171):27-35 PMID: 1088926
  33. Mapping and characterization of promoters in bacteriophages fd, f1 and m13.
    J Mol Biol. 1975 Feb 25;92(2):261-77 PMID: 1095754
  34. Utilization of two distinct modes of replication by a hybrid plasmid constructed in vitro from separate replicons.
    Proc Natl Acad Sci U S A. 1974 Nov;71(11):4556-60 PMID: 4612523
  35. Circular DNA forms of colicinogenic factors E1, E2 and E3 from Escherichia coli.
    J Mol Biol. 1968 Sep 14;36(2):185-94 PMID: 4939624
  36. Enzymatic synthesis of deoxyribonucleic acid. XXV. Purification and properties of deoxyribonucleic acid polymerase induced by infection with phage T4.
    J Biol Chem. 1968 Feb 10;243(3):627-38 PMID: 4866523
  37. Molecular cloning of DNA fragments produced by restriction endonucleases Sa1I and BamI.
    Proc Natl Acad Sci U S A. 1976 May;73(5):1537-41 PMID: 818638
  38. Characterization of a mini-ColC1 plasmid.
    J Bacteriol. 1976 Apr;126(1):447-53 PMID: 770430
Article Info
Journal
Nucleic acids research
Abbr.
Nucleic Acids Res
ISSN
0305-1048
Published
1979-07-25
Pages
3267-87
Language
English
Region
England
NLM ID
0411011
PMCID
PMC327933
Subset
IM
Analysis Services
Analysis Services

Contact

No. 2 Wenbo Road, Zhangqiu District, Jinan, Shandong

Qilu Normal University · Genelibs Bioinformatics Lab

750 Shunhua Rd, Jinan

2F, Bldg F, University Science Park

Tel: 0531-88819269

WeChat Official Account

Follow our WeChat subscription account for real-time updates and the latest in medical and biological research.


Business Email

E-mail: product@genelibs.com