Home LiteratureArticle Details
PMID: 8440235 Published · ppublish English Journal Article Research Support, Non-U.S. Gov't

A nucleosome-dependent static loop potentiates estrogen-regulated transcription from the Xenopus vitellogenin B1 promoter in vitro.

The EMBO journal ·Vol. 12 ·No. 2 ·1993-02-00 ·Pages 423-33

Schild C, Claret FX, Wahli W, Wolffe AP

Abstract

We describe the transcriptional potentiation in estrogen responsive transcription extracts of the Xenopus vitellogenin B1 gene promoter through the formation of a positioned nucleosome. Nuclease digestion and hydroxyl radical cleavage indicate that strong, DNA sequence-directed positioning of a nucleosome occurs between -300 and -140 relative to the start site of transcription. Deletion of this DNA sequence abolishes the potentiation of transcription due to nucleosome assembly. The wrapping of DNA around the histone core of the nucleosome positioned between -300 and -140 creates a static loop in which distal estrogen receptor binding sites are brought close to proximal promoter elements. This might facilitate interactions between the trans-acting factors themselves and/or RNA polymerase. Such a nucleosome provides an example of how chromatin structure might have a positive effect on the transcription process.

MeSH Terms
Animals Base Sequence Chromatin DNA, Single-Stranded Estrogens/physiology Female Gene Expression Regulation HeLa Cells Humans Molecular Sequence Data Nucleic Acid Conformation Nucleosomes/metabolism Promoter Regions, Genetic Receptors, Estrogen/metabolism Transcription Factors/metabolism Transcription, Genetic Vitellogenins/genetics Xenopus
Chemicals
Chromatin DNA, Single-Stranded Estrogens Nucleosomes Receptors, Estrogen Transcription Factors Vitellogenins
Authors & Affiliations
4 authors, click to expand affiliations / ORCID
Schild C
Laboratory of Molecular Embryology, National Institute of Child Health and Human Development, NIH, Bethesda, MD 20892.
Claret F X
Wahli W
Wolffe A P
References (56)
56 references, click to expand
  1. Nucleosome positioning modulates accessibility of regulatory proteins to the mouse mammary tumor virus promoter.
    Cell. 1990 Mar 9;60(5):719-31 PMID: 2155706
  2. Sequence homologies in the region preceding the transcription initiation site of the liver estrogen-responsive vitellogenin and apo-VLDLII genes.
    Nucleic Acids Res. 1984 Nov 26;12(22):8611-26 PMID: 6504705
  3. The interaction of transcription factors with nucleosomal DNA.
    Bioessays. 1992 Sep;14(9):597-603 PMID: 1365915
  4. Chicken vitellogenin gene-binding protein, a leucine zipper transcription factor that binds to an important control element in the chicken vitellogenin II promoter, is related to rat DBP.
    Mol Cell Biol. 1991 Oct;11(10):4863-75 PMID: 1922023
  5. The organization of histones and DNA in chromatin: evidence for an arginine-rich histone kernel.
    Cell. 1976 Jul;8(3):333-47 PMID: 986252
  6. More than just "histone-like" proteins.
    Cell. 1990 Nov 2;63(3):451-3 PMID: 2121364
  7. A simple and rapid method for generating a deletion by PCR.
    Nucleic Acids Res. 1991 May 25;19(10):2785 PMID: 1645866
  8. A liver protein fraction regulating hormone-dependent in vitro transcription from the vitellogenin genes induces their expression in Xenopus oocytes.
    Mol Endocrinol. 1991 Feb;5(2):159-69 PMID: 1710029
  9. Role of trans-activating proteins in the generation of active chromatin at the PHO5 promoter in S. cerevisiae.
    EMBO J. 1990 Aug;9(8):2523-8 PMID: 2196175
  10. Transcription fraction TFIIIC can regulate differential Xenopus 5S RNA gene transcription in vitro.
    EMBO J. 1988 Apr;7(4):1071-9 PMID: 3402432
  11. Histones H2A/H2B inhibit the interaction of transcription factor IIIA with the Xenopus borealis somatic 5S RNA gene in a nucleosome.
    Proc Natl Acad Sci U S A. 1992 Feb 15;89(4):1229-33 PMID: 1741376
  12. Binding of transcription factor TFIID to the major late promoter during in vitro nucleosome assembly potentiates subsequent initiation by RNA polymerase II.
    Cell. 1987 Nov 20;51(4):613-22 PMID: 3677170
  13. CAT constructions with multiple unique restriction sites for the functional analysis of eukaryotic promoters and regulatory elements.
    Nucleic Acids Res. 1987 Jul 10;15(13):5490 PMID: 3037497
  14. Local protein-DNA interactions may determine nucleosome positions on yeast plasmids.
    Nature. 1985 May 16-22;315(6016):250-2 PMID: 3889654
  15. Evolution and expression of vitellogenin genes.
    Trends Genet. 1988 Aug;4(8):227-32 PMID: 3072724
  16. Chromatin structural transitions and the phenomenon of vitellogenin gene memory in chickens.
    Mol Cell Biol. 1986 Jun;6(6):1886-93 PMID: 3785183
  17. Histone contributions to the structure of DNA in the nucleosome.
    Proc Natl Acad Sci U S A. 1991 Aug 1;88(15):6829-33 PMID: 1650485
  18. Structural features of a phased nucleosome core particle.
    Proc Natl Acad Sci U S A. 1983 Jan;80(1):51-5 PMID: 6572008
  19. Activating chromatin.
    Curr Biol. 1991 Dec;1(6):366-8 PMID: 15336081
  20. A cell-specific activator in the Xenopus A2 vitellogenin gene: promoter elements functioning with rat liver nuclear extracts.
    EMBO J. 1988 Aug;7(8):2495-501 PMID: 2847920
  21. Chromosomal organization of Xenopus laevis oocyte and somatic 5S rRNA genes in vivo.
    Mol Cell Biol. 1992 Jan;12(1):45-55 PMID: 1729615
  22. Temporal order of chromatin structural changes associated with activation of the major chicken vitellogenin gene.
    Cell. 1983 May;33(1):65-76 PMID: 6088056
  23. Artificial nucleosome positioning sequences.
    Proc Natl Acad Sci U S A. 1989 Oct;86(19):7418-22 PMID: 2798415
  24. The histone core exerts a dominant constraint on the structure of DNA in a nucleosome.
    Biochemistry. 1991 Aug 27;30(34):8434-40 PMID: 1653013
  25. Estrogen-dependent in vitro transcription from the vitellogenin promoter in liver nuclear extracts.
    Science. 1988 Mar 4;239(4844):1137-9 PMID: 2830672
  26. Nucleosome positioning: occurrence, mechanisms, and functional consequences.
    Prog Nucleic Acid Res Mol Biol. 1991;40:143-84 PMID: 2031082
  27. Transcriptional potentiation of the vitellogenin B1 promoter by a combination of both nucleosome assembly and transcription factors: an in vitro dissection.
    Mol Cell Biol. 1990 Aug;10(8):3926-33 PMID: 2370858
  28. Competitive nucleosome reconstitution of polydeoxynucleotides containing oligoguanosine tracts.
    J Mol Biol. 1989 Jul 20;208(2):297-306 PMID: 2769759
  29. An NF1-related vitellogenin activator element mediates transcription from the estrogen-regulated Xenopus laevis vitellogenin promoter.
    J Biol Chem. 1990 May 15;265(14):8176-82 PMID: 2335521
  30. Recombinant genomes which express chloramphenicol acetyltransferase in mammalian cells.
    Mol Cell Biol. 1982 Sep;2(9):1044-51 PMID: 6960240
  31. Estrogen receptor level determines sex-specific in vitro transcription from the Xenopus vitellogenin promoter.
    Proc Natl Acad Sci U S A. 1990 Oct;87(20):7878-82 PMID: 2236004
  32. Chromatin studies reveal that an ERE is located far upstream of a vitellogenin gene and that a distal tissue-specific hypersensitive site is conserved for two coordinately regulated vitellogenin genes.
    Nucleic Acids Res. 1990 Jul 25;18(14):4157-65 PMID: 2377458
  33. Kinetic analysis of deoxyribonuclease I cleavages in the nucleosome core: evidence for a DNA superhelix.
    J Mol Biol. 1978 Sep 15;124(2):391-420 PMID: 568667
  34. Synergistic transcriptional activation by CTF/NF-I and the estrogen receptor involves stabilized interactions with a limiting target factor.
    Mol Cell Biol. 1991 Jun;11(6):2937-45 PMID: 2038313
  35. A functional role for nucleosomes in the repression of a yeast promoter.
    EMBO J. 1991 Feb;10(2):361-8 PMID: 1899374
  36. Structural analysis of a triple complex between the histone octamer, a Xenopus gene for 5S RNA and transcription factor IIIA.
    EMBO J. 1985 Dec 16;4(13A):3473-82 PMID: 4092686
  37. The structure of DNA in a nucleosome.
    Proc Natl Acad Sci U S A. 1990 Oct;87(19):7405-9 PMID: 2170977
  38. Specific glucocorticoid receptor binding to DNA reconstituted in a nucleosome.
    EMBO J. 1988 Oct;7(10):3073-9 PMID: 2846275
  39. Chromatin as an essential part of the transcriptional mechanism.
    Nature. 1992 Jan 16;355(6357):219-24 PMID: 1731219
  40. Chromatin assembly.
    Methods Cell Biol. 1991;36:541-59 PMID: 1811151
  41. Mutational studies reveal a complex set of positive and negative control elements within the chicken vitellogenin II promoter.
    Mol Cell Biol. 1991 May;11(5):2704-17 PMID: 2017174
  42. Expression of human estrogen receptor mutants in Xenopus oocytes: correlation between transcriptional activity and ability to form protein-DNA complexes.
    EMBO J. 1988 Jun;7(6):1653-60 PMID: 3169000
  43. Transcription factor access is mediated by accurately positioned nucleosomes on the mouse mammary tumor virus promoter.
    Mol Cell Biol. 1991 Feb;11(2):688-98 PMID: 1846670
  44. A bacteriophage RNA polymerase transcribes through a Xenopus 5S RNA gene transcription complex without disrupting it.
    Cell. 1986 Feb 14;44(3):381-9 PMID: 3943130
  45. The presence of nucleosomes on a DNA template prevents initiation by RNA polymerase II in vitro.
    Cell. 1986 Apr 11;45(1):95-104 PMID: 3955658
  46. A nuclear factor I-like activity and a liver-specific repressor govern estrogen-regulated in vitro transcription from the Xenopus laevis vitellogenin B1 promoter.
    Mol Cell Biol. 1989 Dec;9(12):5548-62 PMID: 2586526
  47. Protein/DNA architecture of the DNase I hypersensitive region of the Drosophila hsp26 promoter.
    EMBO J. 1988 Jul;7(7):2191-201 PMID: 2901349
  48. Superhelical stress and nucleosome-mediated repression of 5S RNA gene transcription in vitro.
    EMBO J. 1991 Nov;10(11):3419-28 PMID: 1717265
  49. In vivo footprinting of the estrogen-inducible vitellogenin II gene from chicken.
    Nucleic Acids Res. 1988 Oct 25;16(20):9663-76 PMID: 3186442
  50. The estrogen receptor binds tightly to its responsive element as a ligand-induced homodimer.
    Cell. 1988 Oct 7;55(1):145-56 PMID: 3167974
  51. Glucocorticoids are required for establishment and maintenance of an alteration in chromatin structure: induction leads to a reversible disruption of nucleosomes over an enhancer.
    EMBO J. 1991 Sep;10(9):2569-76 PMID: 1678348
  52. Effects of sequence alterations in a DNA segment containing the 5 S RNA gene from Lytechinus variegatus on positioning of a nucleosome core particle in vitro.
    J Biol Chem. 1985 Dec 5;260(28):15318-24 PMID: 2415517
  53. A new procedure for purifying histone pairs H2A + H2B and H3 + H4 from chromatin using hydroxylapatite.
    Nucleic Acids Res. 1979 Feb;6(2):689-96 PMID: 424310
  54. Initiation of transcription on nucleosomal templates.
    Proc Natl Acad Sci U S A. 1989 Dec;86(24):9817-21 PMID: 2690074
  55. Identification of estrogen-responsive DNA sequences by transient expression experiments in a human breast cancer cell line.
    Nucleic Acids Res. 1986 Nov 25;14(22):8755-70 PMID: 3466137
  56. The formation and function of DNase I hypersensitive sites in the process of gene activation.
    J Biol Chem. 1988 Dec 25;263(36):19259-62 PMID: 3198625
Article Info
Journal
The EMBO journal
Abbr.
EMBO J
ISSN
0261-4189
Published
1993-02-00
Pages
423-33
Language
English
Region
England
NLM ID
8208664
PMCID
PMC413225
Subset
IM
Analysis Services
Analysis Services

Contact

No. 2 Wenbo Road, Zhangqiu District, Jinan, Shandong

Qilu Normal University · Genelibs Bioinformatics Lab

750 Shunhua Rd, Jinan

2F, Bldg F, University Science Park

Tel: 0531-88819269

WeChat Official Account

Follow our WeChat subscription account for real-time updates and the latest in medical and biological research.


Business Email

E-mail: product@genelibs.com