Home LiteratureArticle Details
PMID: 6204862 Published · ppublish English Journal Article Research Support, Non-U.S. Gov't Research Support, U.S. Gov't, Non-P.H.S. Research Support, U.S. Gov't, P.H.S.

Developmentally regulated plant genes: the nucleotide sequence of a wheat gliadin genomic clone.

The EMBO journal ·Vol. 3 ·No. 6 ·1984-06-00 ·Pages 1409-15

Rafalski JA, Scheets K, Metzler M, Peterson DM, Hedgcoth C, Söll DG

Abstract

Gliadins, the major wheat seed storage proteins, are encoded by a multigene family. Northern blot analysis shows that gliadin genes are transcribed in endosperm tissue into two classes of poly(A)+ mRNA, 1400 bases (class I) and 1600 bases (class II) in length. Using poly(A)+ RNA from developing wheat endosperm we constructed a cDNA library from which a number of clones coding for alpha/beta and gamma gliadins were identified by hybrid-selected mRNA translation and DNA sequencing. These cDNA clones were used as probes for the isolation of genomic gliadin clones from a wheat genomic library. One such genomic clone was characterized in detail and its DNA sequence determined. It contains a gene for a 33-kd alpha/beta gliadin protein (a 20 amino acid signal peptide and a 266 amino acid mature protein) which is very rich in glutamine (33.8%) and proline (15.4%). The gene sequence does not contain introns. A typical eukaryotic promoter sequence is present at -104 (relative to the translation initiation codon) and there are two normal polyadenylation signals 77 and 134 bases downstream from the translation termination codon. The coding sequence contains some internal sequence repetition, and is highly homologous to several alpha/beta gliadin cDNA clones. Homology to a gamma-gliadin cDNA clone is low, and there is no homology with known glutenin or zein cDNA sequences.

MeSH Terms
Amino Acid Sequence Base Sequence Cloning, Molecular DNA/analysis DNA Restriction Enzymes Genes Gliadin/genetics Nucleic Acid Conformation Plant Development Plant Proteins/genetics Poly A/genetics Protein Biosynthesis RNA/genetics RNA, Messenger/genetics Transcription, Genetic Triticum/growth & development
Chemicals
Plant Proteins RNA, Messenger Poly A RNA DNA Gliadin DNA Restriction Enzymes
Authors & Affiliations
6 authors, click to expand affiliations / ORCID
Rafalski J A
Scheets K
Metzler M
Peterson D M
Hedgcoth C
Söll D G
References (44)
44 references, click to expand
  1. A conversational system for the computer analysis of nucleic acid sequences.
    Nucleic Acids Res. 1981 Jan 24;9(2):437-44 PMID: 6163137
  2. Regulatory sequences involved in the promotion and termination of RNA transcription.
    Annu Rev Genet. 1979;13:319-53 PMID: 94251
  3. Developmental regulation of cloned superabundant embryo mRNAs in soybean.
    Dev Biol. 1981 Apr 30;83(2):218-31 PMID: 6113180
  4. Isolation and characterization of maize genes coding for zein proteins of the 21000 dalton size class.
    Nucleic Acids Res. 1982 Jul 10;10(13):3845-60 PMID: 6287423
  5. Complete nucleotide sequence of a French bean storage protein gene: Phaseolin.
    Proc Natl Acad Sci U S A. 1983 Apr;80(7):1897-901 PMID: 16593301
  6. The ovalbumin gene-sequence of putative control regions.
    Nucleic Acids Res. 1980 Jan 11;8(1):127-42 PMID: 6243777
  7. Cleavage of structural proteins during the assembly of the head of bacteriophage T4.
    Nature. 1970 Aug 15;227(5259):680-5 PMID: 5432063
  8. Fluorographic detection of radioactivity in polyacrylamide gels with the water-soluble fluor, sodium salicylate.
    Anal Biochem. 1979 Sep 15;98(1):132-5 PMID: 543547
  9. 5'-Terminal sequences of eucaryotic mRNA can be cloned with high efficiency.
    Nucleic Acids Res. 1981 May 25;9(10):2251-66 PMID: 6166921
  10. Possible role of flanking nucleotides in recognition of the AUG initiator codon by eukaryotic ribosomes.
    Nucleic Acids Res. 1981 Oct 24;9(20):5233-52 PMID: 7301588
  11. Purification of biologically active globin messenger RNA by chromatography on oligothymidylic acid-cellulose.
    Proc Natl Acad Sci U S A. 1972 Jun;69(6):1408-12 PMID: 4504350
  12. Multiplicity and diversity of cloned zein cDNA sequences and their chromosomal localisation.
    EMBO J. 1982;1(1):53-8 PMID: 16453407
  13. Transcriptional control regions: nucleotide sequence requirements for initiation by RNA polymerase II and III.
    Curr Top Microbiol Immunol. 1981;93:25-46 PMID: 7026181
  14. cA lectin gene insertion has the structural features of a transposable element.
    Cell. 1983 Oct;34(3):1023-31 PMID: 6313203
  15. N-terminal sequence of alpha2-gliadin.
    Biochim Biophys Acta. 1974 Jun 7;351(2):290-4 PMID: 4407310
  16. Primary structure of a genomic zein sequence of maize.
    EMBO J. 1982;1(11):1337-42 PMID: 6233138
  17. Soybean leghemoglobin gene family: normal, pseudo, and truncated genes.
    Proc Natl Acad Sci U S A. 1982 Jul;79(13):4055-9 PMID: 6287463
  18. Protein mapping by combined gel electrofocusing and electrophoresis: application to the study of genotypic variations in wheat gliadins.
    Biochem Genet. 1970 Aug;4(4):509-16 PMID: 5456438
  19. Cloning and sequence analysis reveal structural variation among related zein genes in maize.
    Cell. 1982 Jul;29(3):1015-26 PMID: 7151164
  20. In Vitro Synthesis of Wheat (Triticum aestivum L.) Storage Proteins.
    Plant Physiol. 1981 Sep;68(3):778-83 PMID: 16661998
  21. "Nonrandom" DNA sequence analysis in bacteriophage M13 by the dideoxy chain-termination method.
    Proc Natl Acad Sci U S A. 1982 Jul;79(14):4298-302 PMID: 6956859
  22. New M13 vectors for cloning.
    Methods Enzymol. 1983;101:20-78 PMID: 6310323
  23. Construction and identification by positive hybridization-translation of a bacterial plasmid containing a rat growth hormone structural gene sequence.
    Nucleic Acids Res. 1978 Jun;5(6):2039-53 PMID: 353736
  24. The characterization of cDNA clones coding for wheat storage proteins.
    Nucleic Acids Res. 1983 May 25;11(10):2961-77 PMID: 6190127
  25. Efficient translation of tobacco mosaic virus RNA and rabbit globin 9S RNA in a cell-free system from commercial wheat germ.
    Proc Natl Acad Sci U S A. 1973 Aug;70(8):2330-4 PMID: 4525168
  26. Filter replicas and permanent collections of recombinant DNA plasmids.
    Nucleic Acids Res. 1979 Dec 20;7(8):2115-36 PMID: 118435
  27. Starch gel electrophoresis of wheat gluten proteins with concentrated urea.
    Arch Biochem Biophys. 1961 Sep;94:477-82 PMID: 13786728
  28. An efficient mRNA-dependent translation system from reticulocyte lysates.
    Eur J Biochem. 1976 AUG 1;67(1):247-56 PMID: 823012
  29. Transport and processing of staphylococcal enterotoxin B.
    J Bacteriol. 1983 Jan;153(1):297-303 PMID: 6848484
  30. Screening lambdagt recombinant clones by hybridization to single plaques in situ.
    Science. 1977 Apr 8;196(4286):180-2 PMID: 322279
  31. Electrofocusing of grain proteins from wheat genotypes.
    Ann N Y Acad Sci. 1973 Jun 15;209:154-62 PMID: 4515031
  32. Integration of synthetic globin genes into an E. coli plasmid.
    Nucleic Acids Res. 1976 Aug;3(8):1961-71 PMID: 787929
  33. The primary structure of a plant storage protein: zein.
    Nucleic Acids Res. 1981 Oct 10;9(19):5163-74 PMID: 6895552
  34. Construction and characterization of new cloning vehicles. II. A multipurpose cloning system.
    Gene. 1977;2(2):95-113 PMID: 344137
  35. Analysis of sequence microheterogeneity among zein messenger RNAs.
    J Biol Chem. 1982 Sep 10;257(17):9976-83 PMID: 6286660
  36. A zein gene of maize is transcribed from two widely separated promoter regions.
    Cell. 1983 Oct;34(3):1015-22 PMID: 6313202
  37. Molecular cloning and analysis of cDNA sequences derived from poly A+ RNA from barley endosperm: identification of B hordein related clones.
    Nucleic Acids Res. 1981 Dec 21;9(24):6689-707 PMID: 6174944
  38. An improved strategy for rapid direct sequencing of both strands of long DNA molecules cloned in a plasmid.
    Nucleic Acids Res. 1983 Aug 25;11(16):5521-40 PMID: 6310503
  39. Sequence analysis and comparison of cDNAs of the zein multigene family .
    EMBO J. 1982;1(11):1329-35 PMID: 6897917
  40. Wheat Storage Proteins : ISOLATION AND CHARACTERIZATION OF THE GLIADIN MESSENGER RNAs.
    Plant Physiol. 1982 Apr;69(4):834-9 PMID: 16662305
  41. Structure and flanking regions of soybean seed protein genes.
    Cell. 1982 Jun;29(2):651-60 PMID: 6288266
  42. Sequencing end-labeled DNA with base-specific chemical cleavages.
    Methods Enzymol. 1980;65(1):499-560 PMID: 6246368
  43. Isolation of biologically active ribonucleic acid from sources enriched in ribonuclease.
    Biochemistry. 1979 Nov 27;18(24):5294-9 PMID: 518835
  44. An insertion sequence blocks the expression of a soybean lectin gene.
    Cell. 1983 Jun;33(2):465-75 PMID: 6190570
Article Info
Journal
The EMBO journal
Abbr.
EMBO J
ISSN
0261-4189
Published
1984-06-00
Pages
1409-15
Language
English
Region
England
NLM ID
8208664
PMCID
PMC557531
Subset
IM
Databases
GENBANK
K03076
Analysis Services
Analysis Services

Contact

No. 2 Wenbo Road, Zhangqiu District, Jinan, Shandong

Qilu Normal University · Genelibs Bioinformatics Lab

750 Shunhua Rd, Jinan

2F, Bldg F, University Science Park

Tel: 0531-88819269

WeChat Official Account

Follow our WeChat subscription account for real-time updates and the latest in medical and biological research.


Business Email

E-mail: product@genelibs.com