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PMID: 2419743 Published · ppublish English Journal Article Research Support, Non-U.S. Gov't Research Support, U.S. Gov't, P.H.S. Review

Structure and organization of the transfer ribonucleic acid genes of Escherichia coli K-12.

Microbiological reviews ·Vol. 49 ·No. 4 ·1985-12-00 ·Pages 379-97

Fournier MJ, Ozeki H

Abstract

暂无摘要

MeSH Terms
Bacillus subtilis/genetics Chromosome Mapping Cloning, Molecular Escherichia coli/genetics Gene Expression Regulation Operon Promoter Regions, Genetic RNA, Bacterial/genetics RNA, Transfer/genetics Salmonella typhimurium/genetics Terminology as Topic Transcription, Genetic
Chemicals
RNA, Bacterial RNA, Transfer
Authors & Affiliations
2 authors, click to expand affiliations / ORCID
Fournier M J
Ozeki H
References (97)
97 references, click to expand
  1. Regulation of bacterial growth, RNA, and protein synthesis.
    Annu Rev Microbiol. 1978;32:393-432 PMID: 360971
  2. Sequence of the gene for isoleucine tRNA1 and the surrounding region in a ribosomal RNA operon of Escherichia coli.
    Nucleic Acids Res. 1979 Feb;6(2):575-92 PMID: 370791
  3. Sequence of the 16 S-23 s spacer region in two ribosomal RNA operons of Escherichia coli.
    J Biol Chem. 1979 May 10;254(9):3264-71 PMID: 372188
  4. Structure and organization of the two tRNATyr gene clusters on the E. coli chromosome.
    Cell. 1979 Mar;16(3):523-34 PMID: 378394
  5. Fusions of the lac operon to the transfer RNA gene tyrT of Escherichia coli.
    J Mol Biol. 1979 May 25;130(3):285-301 PMID: 381675
  6. Transcription termination in the Escherichia coli ribosomal RNA operon rrnC.
    J Biol Chem. 1979 Dec 25;254(24):12725-31 PMID: 115888
  7. Identification of transfer RNA suppressors in Escherichia coli. I. Amber suppressor su+2, an anticodon mutant of tRNA2Gln.
    J Mol Biol. 1979 Aug 25;132(4):649-62 PMID: 160949
  8. Identification of transfer RNA suppressors in Escherichia coli. II. Duplicate genes for tRNA2Gln.
    J Mol Biol. 1979 Aug 25;132(4):663-77 PMID: 160950
  9. Regulatory sequences involved in the promotion and termination of RNA transcription.
    Annu Rev Genet. 1979;13:319-53 PMID: 94251
  10. Stringent control in E. coli.
    Annu Rev Genet. 1979;13:393-415 PMID: 94252
  11. Promoter sequence for stringent control of bacterial ribonucleic acid synthesis.
    J Bacteriol. 1980 Feb;141(2):973-6 PMID: 6154042
  12. Organization of transfer ribonucleic acid genes in the Escherichia coli chromosome.
    J Bacteriol. 1980 Dec;144(3):1083-93 PMID: 6160141
  13. DNA sequence of a T4 transfer RNA gene cluster.
    J Mol Biol. 1980 May 25;139(3):377-91 PMID: 6255163
  14. The distal end of the ribosomal RNA operon rrnD of Escherichia coli contains a tRNA1thr gene, two 5s rRNA genes and a transcription terminator.
    Nucleic Acids Res. 1980 Sep 11;8(17):3793-807 PMID: 6255417
  15. Sequence of the distal tRNA1Asp gene and the transcription termination signal in the Escherichia coli ribosomal RNA operon rrnF(or G).
    Nucleic Acids Res. 1980 Sep 11;8(17):3809-27 PMID: 6255418
  16. Organization and structure of an E. coli tRNA operon containing seven tRNA genes.
    Cell. 1981 Jan;23(1):239-49 PMID: 6163550
  17. The nucleotide sequence of tufB and four nearby tRNA structural genes of Escherichia coli.
    Gene. 1980 Dec;12(1-2):33-9 PMID: 7011904
  18. Transfer RNA precursors are accumulated in Escherichia coli in the absence of RNase E.
    Eur J Biochem. 1981 Mar;114(3):517-24 PMID: 6263617
  19. Correlation between the abundance of Escherichia coli transfer RNAs and the occurrence of the respective codons in its protein genes.
    J Mol Biol. 1981 Feb 15;146(1):1-21 PMID: 6167728
  20. Location of the tufB promoter of E. coli: cotranscription of tufB with four transfer RNA genes.
    Cell. 1981 Jul;25(1):251-8 PMID: 6168388
  21. Gene organization and primary structure of a ribosomal RNA operon from Escherichia coli.
    J Mol Biol. 1981 May 15;148(2):107-27 PMID: 7028991
  22. Nucleotide sequence of an Escherichia coli tRNA (Leu 1) operon and identification of the transcription promoter signal.
    Nucleic Acids Res. 1981 May 11;9(9):2121-39 PMID: 6272226
  23. Dual function transcripts specifying tRNA and mRNA.
    Nature. 1981 Dec 3;294(5840):422-7 PMID: 7312036
  24. An E. coli gene coding for a protamine-like protein.
    Cell. 1981 Nov;26(3 Pt 1):299-304 PMID: 7034959
  25. The tyrT locus: termination and processing of a complex transcript.
    Cell. 1981 Nov;26(3 Pt 1):305-14 PMID: 7034960
  26. Chromosomal locations of the genes for rRNA in Escherichia coli K-12.
    J Bacteriol. 1982 Feb;149(2):458-68 PMID: 6173374
  27. Transcription of the E. coli tufB gene: cotranscription with four tRNA genes and inhibition by guanosine-5'-diphosphate-3'-diphosphate.
    Mol Gen Genet. 1981;183(1):13-9 PMID: 7035813
  28. Processing of procaryotic ribonucleic acid.
    Microbiol Rev. 1981 Dec;45(4):502-41 PMID: 6173734
  29. Bacteriophage SP6-specific RNA polymerase. I. Isolation and characterization of the enzyme.
    J Biol Chem. 1982 May 25;257(10):5772-8 PMID: 7040372
  30. Bacteriophage SP6-specific RNA polymerase. II. Mapping of SP6 DNA and selective in vitro transcription.
    J Biol Chem. 1982 May 25;257(10):5779-88 PMID: 6279614
  31. Correlation between the abundance of Escherichia coli transfer RNAs and the occurrence of the respective codons in its protein genes: a proposal for a synonymous codon choice that is optimal for the E. coli translational system.
    J Mol Biol. 1981 Sep 25;151(3):389-409 PMID: 6175758
  32. Utilization of bacteriophage T7 late promoters in recombinant plasmids during infection.
    J Mol Biol. 1981 Dec 15;153(3):527-44 PMID: 7040687
  33. Large deletion mutants of Escherichia coli tRNATyr1.
    J Mol Biol. 1982 Feb 25;155(2):83-103 PMID: 6281446
  34. In vitro transcription of the supB-E tRNA operon of Escherichia coli. Characterization of transcription products.
    J Biol Chem. 1982 Sep 25;257(18):11113-20 PMID: 6286682
  35. Molecular mapping of glyW, a duplicate gene for tRNA3Gly of Escherichia coli.
    J Bacteriol. 1982 Nov;152(2):773-9 PMID: 6290450
  36. PpGpp regulates the binding of two RNA polymerase molecules to the tyrT promoter.
    Nucleic Acids Res. 1982 Aug 25;10(16):5043-57 PMID: 6291001
  37. Fusion of the Escherichia coli tRNALeu1 promoter to the galK gene: analysis of sequences necessary for growth-rate-dependent regulation.
    Cell. 1982 Oct;30(3):855-64 PMID: 6754090
  38. Gene for heat-inducible lysyl-tRNA synthetase (lysU) maps near cadA in Escherichia coli.
    J Bacteriol. 1983 Feb;153(2):1066-8 PMID: 6337114
  39. Codon usage in bacteria: correlation with gene expressivity.
    Nucleic Acids Res. 1982 Nov 25;10(22):7055-74 PMID: 6760125
  40. Identification of clones carrying an E. coli tRNAPhe gene by suppression of phenylalanyl-tRNA synthetase thermosensitive mutants.
    Nucleic Acids Res. 1983 Feb 11;11(3):727-36 PMID: 6300764
  41. Termination of transcription in E. coli.
    Cell. 1983 Apr;32(4):1029-32 PMID: 6188534
  42. A nucleotide change in the anticodon of an Escherichia coli serine transfer RNA results in supD-amber suppression.
    Nucleic Acids Res. 1983 Jun 11;11(11):3823-32 PMID: 6344015
  43. Compilation and analysis of Escherichia coli promoter DNA sequences.
    Nucleic Acids Res. 1983 Apr 25;11(8):2237-55 PMID: 6344016
  44. Codon usage and transfer RNA contents: organism-specific codon-choice patterns in reference to the isoacceptor contents.
    Cold Spring Harb Symp Quant Biol. 1983;47 Pt 2:1087-97 PMID: 6345068
  45. Molecular cloning and sequencing of pheU, a gene for Escherichia coli tRNAPhe.
    Nucleic Acids Res. 1983 Jul 11;11(13):4379-89 PMID: 6306588
  46. Expression of rRNA and tRNA genes in Escherichia coli: evidence for feedback regulation by products of rRNA operons.
    Cell. 1983 Jul;33(3):865-76 PMID: 6191870
  47. Linkage map of Escherichia coli K-12, edition 7.
    Microbiol Rev. 1983 Jun;47(2):180-230 PMID: 6348505
  48. Temperature-inducible amber suppressor: construction of plasmids containing the Escherichia coli serU- (supD-) gene under control of the bacteriophage lambda pL promoter.
    J Bacteriol. 1983 Sep;155(3):1417-25 PMID: 6224774
  49. Requirement for an upstream element for optimal transcription of a bacterial tRNA gene.
    Nature. 1983 Sep 15-21;305(5931):248-50 PMID: 6350894
  50. RNA polymerase interactions with the upstream region of the E. coli tyrT promoter.
    Cell. 1983 Nov;35(1):265-73 PMID: 6194900
  51. Linkage map of Salmonella typhimurium, Edition VI.
    Microbiol Rev. 1983 Sep;47(3):410-53 PMID: 6314110
  52. The hisR locus of Salmonella: nucleotide sequence and expression.
    Mol Gen Genet. 1983;192(1-2):163-70 PMID: 6358794
  53. tRNAMetf2 gene in the leader region of the nusA operon in Escherichia coli.
    Proc Natl Acad Sci U S A. 1984 Jan;81(2):409-13 PMID: 6364142
  54. The locus of sequence-directed and protein-induced DNA bending.
    Nature. 1984 Apr 5-11;308(5959):509-13 PMID: 6323997
  55. Conserved features of coordinately regulated E. coli promoters.
    Nucleic Acids Res. 1984 Mar 26;12(6):2605-18 PMID: 6369249
  56. The nucleotide sequence of the cloned nusA gene and its flanking region of Escherichia coli.
    Nucleic Acids Res. 1984 Apr 11;12(7):3333-42 PMID: 6326058
  57. An E. coli DNA fragment 118 base pairs in length provides dnaY+ complementing activity.
    Cell. 1984 Jun;37(2):669-74 PMID: 6373018
  58. Genetic mapping of pheU, an Escherichia coli gene for phenylalanine tRNA.
    J Bacteriol. 1984 May;158(2):762-3 PMID: 6373735
  59. Structure of an Escherichia coli tRNA operon containing linked genes for arginine, histidine, leucine, and proline tRNAs.
    J Bacteriol. 1984 Jun;158(3):934-42 PMID: 6327651
  60. Compilation of tRNA sequences.
    Nucleic Acids Res. 1984;12 Suppl:r1-57 PMID: 6728685
  61. Compilation of sequences of tRNA genes.
    Nucleic Acids Res. 1984;12 Suppl:r59-131 PMID: 6728687
  62. The E. coli divE mutation, which differentially inhibits synthesis of certain proteins, is in tRNASer1.
    EMBO J. 1984 May;3(5):1103-7 PMID: 6376117
  63. Evidence for the existence of stable curvature of DNA in solution.
    Proc Natl Acad Sci U S A. 1984 Aug;81(15):4632-6 PMID: 6087336
  64. Protein-nucleic acid interactions in transcription: a molecular analysis.
    Annu Rev Biochem. 1984;53:389-446 PMID: 6206781
  65. A proposal for a uniform nomenclature in bacterial genetics.
    Genetics. 1966 Jul;54(1):61-76 PMID: 5961488
  66. Duplicate genes for tyrosine transfer RNA in Escherichia coli.
    J Mol Biol. 1970 Jan 14;47(1):1-13 PMID: 4905086
  67. Isolation and partial characterization of the transfer ribonucleic acid cistrons from Escherichia coli.
    Nature. 1970 Aug 1;227(5257):448-51 PMID: 4913717
  68. Glycine transfer RNA of Escherichia coli. I. Structural genes for two glycine tRNA species.
    J Mol Biol. 1970 Sep 28;52(3):557-69 PMID: 4923751
  69. Tyrosine tRNA precursor molecule polynucleotide sequence.
    Nat New Biol. 1971 Sep 8;233(36):35-9 PMID: 4938965
  70. Histidine regulation in Salmonella typhimurium. IX. Histidine transfer ribonucleic acid of the regulatory mutants.
    J Biol Chem. 1972 Feb 25;247(4):1080-8 PMID: 4551510
  71. Relationships among deoxyribonucleic acid, ribonucleic acid, and specific transfer ribonucleic acids in Escherichia coli 15T - at various growth rates.
    J Bacteriol. 1973 Jul;115(1):177-87 PMID: 4577741
  72. Small ribonucleic acids of Escherichia coli. II. Noncoordinate accumulation during stringent control.
    J Biol Chem. 1973 Jul 25;248(14):5033-41 PMID: 4577762
  73. Joint transcription of two tRNA1Tyr genes from Escherichia coli.
    Nature. 1974 May 31;249(456):418-21 PMID: 4599596
  74. Clustering of tRNA cistrons in Escherichia coli DNA.
    Biochem Biophys Res Commun. 1974 Oct 8;60(3):1148-54 PMID: 4279662
  75. Multiple gene loci for a single species of glycine transfer ribonucleic acid.
    J Bacteriol. 1975 May;122(2):492-501 PMID: 1092653
  76. Precursor molecules of Escherichia coli transfer RNAs accumulated in a temperature-sensitive mutant.
    J Mol Biol. 1975 Jul 25;96(1):69-86 PMID: 1099216
  77. Promoter-dependent transcription of tRNAITyr genes using DNA fragments produced by restriction enzymes.
    Proc Natl Acad Sci U S A. 1975 Dec;72(12):4754-8 PMID: 1107999
  78. Isolation and characterization of large transfer ribonucleic acid precursors from Escherichia coli.
    J Biol Chem. 1976 Feb 25;251(4):922-9 PMID: 765341
  79. Escherichia coli tyrosine transfer ribonucleic acid genes. Nucleotide sequences of their promoters and of the regions adjoining C-C-A ends.
    J Biol Chem. 1976 Sep 10;251(17):5124-40 PMID: 821949
  80. In vitro biosynthesis of functional Escherichia coli su3+ tyrosine transfer RNA.
    Biochemistry. 1977 Aug 9;16(16):3608-18 PMID: 329874
  81. Gross map location of Escherichia coli transfer RNA genes.
    J Mol Biol. 1977 Dec 5;117(2):419-46 PMID: 342702
  82. A rho-dependent termination site in the gene coding for tyrosine tRNA su3 of Escherichia coli.
    Nature. 1978 Mar 30;272(5652):423-8 PMID: 345126
  83. Structural analysis of the tRNA1Tyr gene of Escherichia coli. A 178 base pair sequence that is repeated 3.14 times.
    J Biol Chem. 1978 May 25;253(10):3607-22 PMID: 348694
  84. Characterization and in vitro processing of transfer RNA precursors accumulated in a temperature-sensitive mutant of Escherichia coli.
    J Mol Biol. 1978 Aug 15;123(3):287-326 PMID: 357735
  85. Identification of transfer RNA suppressors in Escherichia coli. III. Ochre suppressors of lysine tRNA.
    J Mol Biol. 1984 Aug 25;177(4):609-25 PMID: 6207301
  86. Identification of transfer RNA suppressors in Escherichia coli. IV. Amber suppressor Su+6 a double mutant of a new species of leucine tRNA.
    J Mol Biol. 1984 Aug 25;177(4):627-44 PMID: 6207302
  87. Efficient in vitro synthesis of biologically active RNA and RNA hybridization probes from plasmids containing a bacteriophage SP6 promoter.
    Nucleic Acids Res. 1984 Sep 25;12(18):7035-56 PMID: 6091052
  88. Cloning and sequence analysis of the Escherichia coli 4.5 S RNA gene.
    J Mol Biol. 1984 Sep 25;178(3):509-31 PMID: 6208370
  89. The 4.5 S RNA gene of Escherichia coli is essential for cell growth.
    J Mol Biol. 1984 Sep 25;178(3):533-50 PMID: 6208371
  90. Conformational change in the DNA associated with an unusual promoter mutation in a tRNA operon of Salmonella.
    Cell. 1984 Dec;39(3 Pt 2):643-52 PMID: 6096016
  91. Escherichia coli supH suppressor: temperature-sensitive missense suppression caused by an anticodon change in tRNASer2.
    J Bacteriol. 1985 Jan;161(1):207-11 PMID: 3155715
  92. Leucine tRNA family of Escherichia coli: nucleotide sequence of the supP(Am) suppressor gene.
    J Bacteriol. 1985 Jan;161(1):219-22 PMID: 2981802
  93. Escherichia coli 6S RNA is not essential for growth or protein secretion.
    J Bacteriol. 1985 Mar;161(3):1156-61 PMID: 2579059
  94. Escherichia coli 6S RNA gene is part of a dual-function transcription unit.
    J Bacteriol. 1985 Mar;161(3):1162-70 PMID: 2579060
  95. Structure and organization of genes for transfer ribonucleic acid in Bacillus subtilis.
    Microbiol Rev. 1985 Mar;49(1):71-80 PMID: 2580221
  96. Structure and transcription of the tRNAPro1 gene from Escherichia coli.
    Nucleic Acids Res. 1985 May 10;13(9):3213-20 PMID: 3923443
  97. Regulation of the synthesis of ribosomes and ribosomal components.
    Annu Rev Biochem. 1984;53:75-117 PMID: 6206783
Article Info
Journal
Microbiological reviews
Abbr.
Microbiol Rev
ISSN
0146-0749
Published
1985-12-00
Pages
379-97
Language
English
Region
United States
NLM ID
7806086
PMCID
PMC373044
Subset
IM
Grants
NIGMS NIH HHS · GM 19351 · United States
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