Home LiteratureArticle Details
PMID: 7099966 Published · ppublish English Comparative Study Journal Article Research Support, Non-U.S. Gov't

The sequence of the 5.8 S ribosomal RNA of the crustacean Artemia salina. With a proposal for a general secondary structure model for 5.8 S ribosomal RNA.

Nucleic acids research ·Vol. 10 ·No. 11 ·1982-06-11 ·Pages 3517-30

Ursi D, Vandenberghe A, De Wachter R

Abstract

We report the primary structure of 5.8 S rRNA from the crustacean Artemia salina. The preparation shows length heterogeneity at the 5'-terminus, but consists of uninterrupted RNA chains, in contrast to some insect 5.8 S rRNAs, which consist of two chains of unequal length separated in the gene by a short spacer. The sequence was aligned with those of 11 other 5.8 S rRNAs and a general secondary structure model derived. It has four helical regions in common with the model of Nazar et al. (J. Biol. Chem. 250, 8591-8597 (1975)), but for a fifth helix a different base pairing scheme was found preferable, and the terminal sequences are presumed to bind to 28 S rRNA instead of binding to each other. In the case of yeast, where both the 5.8 S and 26 S rRNA sequences are known, the existence of five helices in 5.8 S rRNA is shown to be compatible with a 5.8 S - 26 S rRNA interaction model.

MeSH Terms
Animals Artemia/genetics Base Composition Base Sequence Molecular Weight Nucleic Acid Conformation RNA, Ribosomal/genetics Species Specificity
Chemicals
RNA, Ribosomal
Authors & Affiliations
3 authors, click to expand affiliations / ORCID
Ursi D
Vandenberghe A
De Wachter R
References (36)
36 references, click to expand
  1. A supernatant factor involved in initiation complex formation with eukaryotic ribosomes.
    Proc Natl Acad Sci U S A. 1971 Dec;68(12):3059-63 PMID: 4943553
  2. The nucleotide sequence of Saccharomyces cerevisiae 5.8 S ribosomal ribonucleic acid.
    J Biol Chem. 1973 Jun 10;248(11):3860-75 PMID: 4575197
  3. Improved estimation of secondary structure in ribonucleic acids.
    Nat New Biol. 1973 Nov 14;246(150):40-1 PMID: 4519026
  4. Method for predicting RNA secondary structure.
    Proc Natl Acad Sci U S A. 1975 Jun;72(6):2017-21 PMID: 1056009
  5. 5S RNA secondary structure.
    Nature. 1975 Aug 7;256(5517):505-7 PMID: 808733
  6. Structural analyses of mammalian ribosomal ribonucleic acid and its precursors. Nucleotide sequence of ribosomal 5.8 S ribonucleic acid.
    J Biol Chem. 1975 Nov 25;250(22):8591-7 PMID: 171258
  7. Structure of the 5.8S RNA component of the 5.8S-28S ribosomal RNA junction complex.
    Biochemistry. 1977 Nov 29;16(24):5321-8 PMID: 921935
  8. The nucleotide sequences of 5.8-S ribosomal RNA from Xenopus laevis and Xenopus borealis.
    Eur J Biochem. 1978 Jun 1;87(1):199-214 PMID: 668689
  9. Globin mRNA sequences: analysis of base pairing and evolutionary implications.
    Cold Spring Harb Symp Quant Biol. 1978;42 Pt 2:985-1002 PMID: 277330
  10. Laser Raman evidence for new cloverleaf secondary structures for eukaryotic 5.8S RNA and prokaryotic 5S RNA.
    Proc Natl Acad Sci U S A. 1978 Oct;75(10):4901-5 PMID: 368804
  11. Direct chemical method for sequencing RNA.
    Proc Natl Acad Sci U S A. 1979 Apr;76(4):1760-4 PMID: 377283
  12. Nucleotide sequence and conserved features of the 5.8 S rRNA coding region of Neurospora crassa.
    Nucleic Acids Res. 1979 Jun 11;6(7):2561-7 PMID: 156910
  13. Sequence homology at the 3'-ends of alfalfa mosaic virus RNAs.
    FEBS Lett. 1979 Nov 1;107(1):61-5 PMID: 499559
  14. Sequence and secondary structure of Drosophila melanogaster 5.8S and 2S rRNAs and of the processing site between them.
    Nucleic Acids Res. 1979 Dec 20;7(8):2213-38 PMID: 118436
  15. Prediction of pairing schemes in RNA molecules-loop contributions and energy of wobble and non-wobble pairs.
    Biochimie. 1979;61(10):1133-50 PMID: 394764
  16. A 5.8 S rRNA-like sequence in prokaryotic 23 S rRNA.
    FEBS Lett. 1980 Oct 6;119(2):212-4 PMID: 6159235
  17. Secondary structure model for bacterial 16S ribosomal RNA: phylogenetic, enzymatic and chemical evidence.
    Nucleic Acids Res. 1980 May 24;8(10):2275-93 PMID: 6159576
  18. Coding and spacer sequences in the 5.8S-2S region of Sciara coprophila ribosomal DNA.
    Nucleic Acids Res. 1980 Aug 25;8(16):3565-73 PMID: 7433100
  19. An improved direct RNA sequence method; its application to Vicia faba 5.8S ribosomal RNA.
    Nucleic Acids Res. 1980 Mar 25;8(6):1259-72 PMID: 6159591
  20. High-pressure liquid chromatography analysis of oligo- and monoribonucleotide mixtures, with special reference to ribosomal RNA constituents.
    Anal Biochem. 1980 Sep 15;107(2):369-76 PMID: 7001951
  21. Nucleotide sequences of wheat-embryo cytosol 5-S and 5.8-S ribosomal ribonucleic acids.
    Eur J Biochem. 1980 Dec;112(3):561-76 PMID: 6780349
  22. Nucleotide sequence through the 18S-28S intergene region of a vertebrate ribosomal transcription unit.
    Nucleic Acids Res. 1980 Dec 20;8(24):5993-6005 PMID: 6258158
  23. The nucleotide sequence at the 3'-end of Neurospora crassa 25S-rRNA and the location of a 5.8S-rRNA binding site.
    Nucleic Acids Res. 1981 Mar 11;9(5):1111-21 PMID: 6453330
  24. Nucleotide sequence and structure of cytoplasmic 5S RNA and 5.8S RNA of Chlamydomonas reinhardii.
    Nucleic Acids Res. 1981 Mar 25;9(6):1291-9 PMID: 7232217
  25. Studies on the secondary structure of 5.8 S rRNA from a thermophile, Thermomyces lanuginosus.
    J Biol Chem. 1981 Jun 10;256(11):5675-82 PMID: 7195399
  26. Sequence homologies between eukaryotic 5.8S rRNA and the 5' end of prokaryotic 23S rRNa: evidences for a common evolutionary origin.
    Nucleic Acids Res. 1981 Jun 25;9(12):2913-32 PMID: 7024907
  27. Secondary structure of the large subunit ribosomal RNA from Escherichia coli, Zea mays chloroplast, and human and mouse mitochondrial ribosomes.
    Nucleic Acids Res. 1981 Jul 24;9(14):3287-306 PMID: 7024913
  28. Nucleotide sequences of Acanthamoeba castellanii 5S and 5.8S ribosomal ribonucleic acids: phylogenetic and comparative structural analyses.
    Nucleic Acids Res. 1981 Jul 24;9(14):3321-34 PMID: 7279665
  29. An evaluation of the phylogenetic position of the dinoflagellate Crypthecodinium cohnii based on 5S rRNA characterization.
    J Mol Evol. 1981;17(6):334-7 PMID: 7197304
  30. Primary and secondary structures of Escherichia coli MRE 600 23S ribosomal RNA. Comparison with models of secondary structure for maize chloroplast 23S rRNA and for large portions of mouse and human 16S mitochondrial rRNAs.
    Nucleic Acids Res. 1981 Sep 11;9(17):4303-24 PMID: 6170936
  31. Altered features in the secondary structure of Vicia faba 5.8s rRNA.
    Nucleic Acids Res. 1981 Oct 24;9(20):5345-58 PMID: 7301589
  32. The nucleotide sequence of the intergenic region between the 5.8S and 26S rRNA genes of the yeast ribosomal RNA operon. Possible implications for the interaction between 5.8S and 26S rRNA and the processing of the primary transcript.
    Nucleic Acids Res. 1981 Oct 10;9(19):4847-62 PMID: 7312619
  33. A general secondary-structure model for procaryotic and eucaryotic RNAs from the small ribosomal subunits.
    Eur J Biochem. 1981 Dec;120(3):487-95 PMID: 6174326
  34. Studies on the secondary structure of wheat 5.8 S rRNA. Conformational changes in the A + U-rich stem during ribosome assembly.
    Eur J Biochem. 1982 Jan;121(2):357-63 PMID: 7060553
  35. Collection of published 5S and 5.8S RNA sequences and their precursors.
    Nucleic Acids Res. 1982 Jan 22;10(2):r93-115 PMID: 6174939
  36. The primary and secondary structure of yeast 26S rRNA.
    Nucleic Acids Res. 1981 Dec 21;9(24):6935-52 PMID: 7335496
Article Info
Journal
Nucleic acids research
Abbr.
Nucleic Acids Res
ISSN
0305-1048
DOI
10.1093/nar/10.11.3517
Published
1982-06-11
Pages
3517-30
Language
English
Region
England
NLM ID
0411011
PMCID
PMC320728
Subset
IM
Databases
GENBANK
M20198
External Links
PubMed source DOI: 10.1093/nar/10.11.3517 PMC Full Text View journal details
Analysis Services
Analysis Services

Contact

No. 2 Wenbo Road, Zhangqiu District, Jinan, Shandong

Qilu Normal University · Genelibs Bioinformatics Lab

750 Shunhua Rd, Jinan

2F, Bldg F, University Science Park

Tel: 0531-88819269

WeChat Official Account

Follow our WeChat subscription account for real-time updates and the latest in medical and biological research.


Business Email

E-mail: product@genelibs.com

Copyright © 2026.Genelibs Jinan Honghui Biotechnology Co., Ltd. 鲁ICP备20007159号-2