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PMID: 7024907 Published · ppublish English Comparative Study Journal Article Research Support, Non-U.S. Gov't

Sequence homologies between eukaryotic 5.8S rRNA and the 5' end of prokaryotic 23S rRNa: evidences for a common evolutionary origin.

Nucleic acids research ·Vol. 9 ·No. 12 ·1981-06-25 ·Pages 2913-32

Jacq B

Abstract

The question of the evolutionary origin of eukaryotic 5.8S rRNA was re-examined after the recent publication of the E. coli 23S rRNA sequence (26,40). A region of the 23S RNA located at its 5' end was found to be approximately 50% homologous to four different eukaryotic 5.8S rRNAs. A computer comparison analysis indicates that no other region of the E. coli ribosomal transcription unit (greater than 5 000 nucleotides in length) shares a comparable homology with 5.8S rRNA. Homology between the 5' end of e. coli 23S and four different eukaryotic 5.8S rRNAs falls within the same range as that between E. coli 5S RNA from the same four eukaryotic species. All these data strongly suggest that the 5' end of prokaryotic 23S rRNA and eukaryotic 5.8S RNA have a common evolutionary origin. Secondary structure models are proposed for the 5' region of E. coli 23S RNA.

MeSH Terms
Animals Base Sequence Biological Evolution Escherichia coli/genetics Nucleic Acid Hybridization RNA, Ribosomal/genetics Ribosomes/analysis Species Specificity Xenopus
Chemicals
RNA, Ribosomal
Authors & Affiliations
1 authors, click to expand affiliations / ORCID
Jacq B
References (60)
60 references, click to expand
  1. DNA sequences of promoter regions for rRNA operons rrnE and rrnA in E. coli.
    Cell. 1979 May;17(1):201-9 PMID: 378405
  2. Structure and function of 5S and 5.8 S RNA.
    Prog Nucleic Acid Res Mol Biol. 1976;18:45-90 PMID: 790474
  3. Escherichia coli 5S RNA binding proteins L18 and L25 interact with 5.8S RNA but not with 5S RNA from yeast ribosomes.
    Proc Natl Acad Sci U S A. 1977 Jul;74(7):2706-9 PMID: 142985
  4. Complete nucleotide sequence of a 16S ribosomal RNA gene from Escherichia coli.
    Proc Natl Acad Sci U S A. 1978 Oct;75(10):4801-5 PMID: 368799
  5. Role of the 5'-terminal sequence in the RNA binding site of yeast 5.8 S rRNA.
    FEBS Lett. 1980 Jun 16;115(1):71-6 PMID: 6771162
  6. Nucleotide sequence of rainbow trout (Salmo gairdneri) ribosomal 5.8 S ribonucleic acid.
    J Biol Chem. 1978 Jan 25;253(2):395-9 PMID: 618879
  7. Complete nucleotide sequence of a 23S ribosomal RNA gene from Escherichia coli.
    Proc Natl Acad Sci U S A. 1980 Jan;77(1):201-4 PMID: 6153795
  8. The nucleotide sequence of somatic 5 S RNA from Xenopus laevis.
    FEBS Lett. 1972 Sep 1;25(1):8-12 PMID: 11946709
  9. Laser Raman evidence for new cloverleaf secondary structures for eukaryotic 5.8S RNA and prokaryotic 5S RNA.
    Proc Natl Acad Sci U S A. 1978 Oct;75(10):4901-5 PMID: 368804
  10. The nucleotide sequence of the 5S RNA of chicken embryo fibroblasts.
    Nucleic Acids Res. 1975 Dec;2(12):2279-88 PMID: 829911
  11. A possible role for 5 S rRNA as a bridge between ribosomal subunits.
    Can J Biochem. 1973 Dec;51(12):1669-72 PMID: 4775438
  12. Arrangement of the 5-8 S RNA cistrons in the genome of Xenopus laevis.
    J Mol Biol. 1974 Aug 5;87(2):237-56 PMID: 4473555
  13. Evolutionary origin of 5.8S ribosomal RNA.
    Nature. 1976 Mar 4;260(5546):74-5 PMID: 772443
  14. Identical 3'-terminal octanucleotide sequence in 18S ribosomal ribonucleic acid from different eukaryotes. A proposed role for this sequence in the recognition of terminator codons.
    Biochem J. 1974 Sep;141(3):609-15 PMID: 4219140
  15. Evolution of 5sRNA.
    J Mol Evol. 1975 Dec 31;7(1):75-86 PMID: 765486
  16. Distinctive sequence of human mitochondrial ribosomal RNA genes.
    Nature. 1980 Jul 31;286(5772):460-7 PMID: 6157106
  17. Mapping adenines, guanines, and pyrimidines in RNA.
    Nucleic Acids Res. 1977 Aug;4(8):2527-38 PMID: 409999
  18. Precise localization and nucleotide sequence of the two mouse mitochondrial rRNA genes and three immediately adjacent novel tRNA genes.
    Cell. 1980 Nov;22(1 Pt 1):157-70 PMID: 7428037
  19. Nucleotide sequence through the 18S-28S intergene region of a vertebrate ribosomal transcription unit.
    Nucleic Acids Res. 1980 Dec 20;8(24):5993-6005 PMID: 6258158
  20. Conservation of the primary structure at the 3' end of 18S rRNA from eucaryotic cells.
    Cell. 1978 Mar;13(3):551-63 PMID: 77738
  21. Interaction between Escherichia coli ribosomal proteins and 5S RNA molecules: recognition of prokaryotic 5S RNAs and rejection of eukaryotic 5S RNAs.
    Biochimie. 1973;55(1):29-35 PMID: 4578553
  22. Structure analysis at the ends of the intervening DNA sequences in the chloroplast 23S ribosomal genes of C. reinhardii.
    Cell. 1979 Sep;18(1):55-60 PMID: 509525
  23. Mapping of the Xenopus laevis 5.8S rDNA by restriction and DNA sequencing.
    Nucleic Acids Res. 1978 Apr;5(4):1121-37 PMID: 652517
  24. Transcriptional organization of the ribosomal RNA cistrons in Escherichia coli.
    Proc Natl Acad Sci U S A. 1971 Aug;68(8):1786-90 PMID: 4942914
  25. A fragment of 23S RNA containing a nucleotide sequence complementary to a region of 5S RNA.
    FEBS Lett. 1975 May 1;53(2):248-52 PMID: 1095416
  26. Sequence of the 3'-terminal portion of Drosophila melanogaster 18 S rRNA and of the adjoining spacer: comparison with corresponding prokaryotic and eukaryotic sequences.
    FEBS Lett. 1980 Aug 11;117(1):227-31 PMID: 6250894
  27. DNA sequencing with chain-terminating inhibitors.
    Proc Natl Acad Sci U S A. 1977 Dec;74(12):5463-7 PMID: 271968
  28. Nucleotide sequence of Drosophila melanogaster 5S RNA: evidence for a general 5S RNA model.
    FEBS Lett. 1976 Feb 15;62(2):146-9 PMID: 815108
  29. Sequence and secondary structure of Drosophila melanogaster 5.8S and 2S rRNAs and of the processing site between them.
    Nucleic Acids Res. 1979 Dec 20;7(8):2213-38 PMID: 118436
  30. A 5.8 S rRNA-like sequence in prokaryotic 23 S rRNA.
    FEBS Lett. 1980 Oct 6;119(2):212-4 PMID: 6159235
  31. Coding and spacer sequences in the 5.8S-2S region of Sciara coprophila ribosomal DNA.
    Nucleic Acids Res. 1980 Aug 25;8(16):3565-73 PMID: 7433100
  32. The number of rRNA genes in Escherichia coli.
    FEBS Lett. 1977 Jul 1;79(1):77-9 PMID: 330226
  33. Heterogeneity of 5S RNA in Escherichia coli.
    Mol Gen Genet. 1971;113(1):43-50 PMID: 4944480
  34. Nucleotide sequence relationships between vertebrate 5.8 S ribosomal RNAs.
    Nucleic Acids Res. 1977 Jul;4(7):2495-505 PMID: 409998
  35. Characterization of a new low molecular weight RNA in HeLa cell ribosomes.
    J Mol Biol. 1968 May 14;33(3):609-23 PMID: 5700415
  36. Collection of published 5S and 5.8S rRNA sequences and their precursors.
    Nucleic Acids Res. 1980 Jan 11;8(1):r31-r47 PMID: 6986609
  37. RNA-RNA interactions in the binding site of protein L24 on 23S ribosomal RNA of E. coli. II. Sequence analysis of the interacting fragments.
    Nucleic Acids Res. 1978 Dec;5(12):4933-47 PMID: 370782
  38. The nucleotide sequence of Saccharomyces cerevisiae 5.8 S ribosomal ribonucleic acid.
    J Biol Chem. 1973 Jun 10;248(11):3860-75 PMID: 4575197
  39. Ribosomal DNA of fly Sciara coprophila has a very small and homogeneous repeat unit.
    Mol Gen Genet. 1979 May 23;173(1):1-13 PMID: 288964
  40. Tandem promoters direct E. coli ribosomal RNA synthesis.
    Cell. 1979 May;17(1):225-34 PMID: 110460
  41. Activities of B. stearothermophilus 50 S ribosomes reconstituted with prokaryotic and eukaryotic 5 S RNA.
    FEBS Lett. 1973 Jul 15;33(3):315-9 PMID: 4580763
  42. Sequence of the intron and flanking exons of the mitochondrial 21S rRNA gene of yeast strains having different alleles at the omega and rib-1 loci.
    Cell. 1980 May;20(1):185-97 PMID: 6156002
  43. Sequence of the 16 S-23 s spacer region in two ribosomal RNA operons of Escherichia coli.
    J Biol Chem. 1979 May 10;254(9):3264-71 PMID: 372188
  44. Structural study of ribosomal 23 S RNA from Escherichia coli.
    FEBS Lett. 1979 Nov 1;107(1):177-81 PMID: 387450
  45. A distinct RNA polymerase activity, synthesizing 5-5 s, 5 s and 4 s RNA in nuclei from adenovirus 2-infected HeLa cells.
    J Mol Biol. 1972 Oct 14;70(3):435-50 PMID: 5083146
  46. Secondary structure model for bacterial 16S ribosomal RNA: phylogenetic, enzymatic and chemical evidence.
    Nucleic Acids Res. 1980 May 24;8(10):2275-93 PMID: 6159576
  47. Demonstration of the "5-8 S" ribosomal sequence in HeLa cell ribosomal precursor RNA.
    J Mol Biol. 1974 Aug 5;87(2):227-35 PMID: 4427368
  48. Recent progress in the determination of the primary sequence of the 16 S RNA of Escherichia coli.
    FEBS Lett. 1977 Dec 15;84(2):337-41 PMID: 413741
  49. Structural analyses of mammalian ribosomal ribonucleic acid and its precursors. Nucleotide sequence of ribosomal 5.8 S ribonucleic acid.
    J Biol Chem. 1975 Nov 25;250(22):8591-7 PMID: 171258
  50. Frequency of insertion-deletion, transversion, and transition in the evolution of 5S ribosomal RNA.
    J Mol Evol. 1976 Mar 29;7(2):133-49 PMID: 772222
  51. Nucleotide sequence of 5S-ribosomal RNA from Escherichia coli.
    Nature. 1967 Aug 12;215(5102):735-6 PMID: 4862513
  52. Studies on the nucleotide sequence of pseudouridine-containing 5S RNA from Saccharomyces cerevisiae.
    J Biochem. 1974 Jun;75(6):1407-10 PMID: 4609984
  53. A new method for sequencing DNA.
    Proc Natl Acad Sci U S A. 1977 Feb;74(2):560-4 PMID: 265521
  54. The ribonuclease III site flanking 23S sequences in the 30S ribosomal precursor RNA of E. coli.
    Cell. 1980 Feb;19(2):393-401 PMID: 6153577
  55. The 30 S ribosomal precursor RNA from Escherichia coli. A primary transcript containing 23 S, 16 S, and 5 S sequences.
    J Biol Chem. 1975 Jul 25;250(14):5647-54 PMID: 1095585
  56. Extensions of the known sequences at the 3' and 5' ends of 23S ribosomal RNA from Escherichia coli, possible base pairing between these 23S RNA regions and 16S ribosomal RNA.
    Nucleic Acids Res. 1976 Jul;3(7):1671-87 PMID: 823528
  57. Structure of the 5.8S RNA component of the 5.8S-28S ribosomal RNA junction complex.
    Biochemistry. 1977 Nov 29;16(24):5321-8 PMID: 921935
  58. Oligonucleotide pattern after pancreatic ribonuclease digestion and the 3' and 5' termini of 5S ribonucleic acid from HeLa cells.
    Biochemistry. 1969 Dec;8(12):4989-5005 PMID: 5365790
  59. The nucleotide sequences of 5.8-S ribosomal RNA from Xenopus laevis and Xenopus borealis.
    Eur J Biochem. 1978 Jun 1;87(1):199-214 PMID: 668689
  60. Late steps in the maturation of Drosophila 26 S ribosomal RNA: generation of 5-8 S and 2 S RNAs by cleavages occurring in the cytoplasm.
    J Mol Biol. 1976 Feb 15;101(1):85-105 PMID: 768488
Article Info
Journal
Nucleic acids research
Abbr.
Nucleic Acids Res
ISSN
0305-1048
Published
1981-06-25
Pages
2913-32
Language
English
Region
England
NLM ID
0411011
PMCID
PMC326902
Subset
IM
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