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PMID: 2847915 Published · ppublish English Comparative Study Journal Article

Physical mapping of the human pseudo-autosomal region; comparison with genetic linkage map.

The EMBO journal ·Vol. 7 ·No. 8 ·1988-08-00 ·Pages 2369-76

Petit C, Levilliers J, Weissenbach J

Abstract

A long-range restriction map of the pseudo-autosomal or exchange pairing region (corresponding to the terminal parts of the short arms of the human sex chromosomes) has been established using pulsed field gel electrophoresis. A total of seven loci have been located on this physical map based essentially on the analysis of 45,X Turner genomes. The region spans a total of 2600 kb. The 5' end of the MIC2 gene maps at less than 80 kb from the proximal pseudo-autosomal boundary. Since the total pseudo-autosomal linkage interval represents approximately 50% of recombination at male meiosis, 1 cM corresponds to 50-60 kb. This is consistent with the almost 20-fold increase in recombination frequency observed in male versus female meiosis in this region. The present data show no distortion between both physical and linkage maps. The distribution of the CpG-rich restriction sites is notably disequilibrated. A large subset of these sites is concentrated within the 500 kb closest to the telomere whereas others appear in clusters (probably HTF islands) scattered in the rest of the pseudo-autosomal region.

MeSH Terms
Blotting, Southern Chromosome Mapping DNA/genetics DNA Restriction Enzymes Electrophoresis, Agar Gel Female Genetic Linkage Humans Male Meiosis Nucleic Acid Hybridization Sex Chromosomes Turner Syndrome/genetics
Chemicals
DNA DNA Restriction Enzymes
Authors & Affiliations
3 authors, click to expand affiliations / ORCID
Petit C
Unité de Recombinaison et Expression Génétique, INSERM U-163, CNRS UA-271, Institut Pasteur, Paris, France.
Levilliers J
Weissenbach J
References (43)
43 references, click to expand
  1. Megabase-scale mapping of the HLA gene complex by pulsed field gel electrophoresis.
    Science. 1987 Mar 13;235(4794):1387-90 PMID: 3029868
  2. A sex chromosome rearrangement in a human XX male caused by Alu-Alu recombination.
    Cell. 1987 Nov 6;51(3):417-25 PMID: 2822256
  3. A gradient of sex linkage in the pseudoautosomal region of the human sex chromosomes.
    Nature. 1986 Jan 23-29;319(6051):291-5 PMID: 3941746
  4. A pseudoautosomal gene in man.
    Science. 1986 Nov 7;234(4777):740-3 PMID: 2877492
  5. An electrophoretic karyotype for yeast.
    Proc Natl Acad Sci U S A. 1985 Jun;82(11):3756-60 PMID: 3889913
  6. Hypervariable telomeric sequences from the human sex chromosomes are pseudoautosomal.
    Nature. 1985 Oct 24-30;317(6039):687-92 PMID: 2997619
  7. Active X chromosome DNA is unmethylated at eight CCGG sites clustered in a guanine-plus-cytosine-rich island at the 5' end of the gene for phosphoglycerate kinase.
    Mol Cell Biol. 1986 Nov;6(11):4122-5 PMID: 3025634
  8. Orientation and molecular map position of the complement genes in the mouse MHC.
    EMBO J. 1987 Feb;6(2):369-73 PMID: 3034587
  9. Genomic sequencing.
    Proc Natl Acad Sci U S A. 1984 Apr;81(7):1991-5 PMID: 6326095
  10. X-linkage of steroid sulphatase in the mouse is evidence for a functional Y-linked allele.
    Nature. 1985 May 16-22;315(6016):226-7 PMID: 3858674
  11. A large inverted duplication allows homologous recombination between chromosomes heterozygous for the proximal t complex inversion.
    Cell. 1987 Mar 13;48(5):813-25 PMID: 2880670
  12. Long-range restriction site mapping of mammalian genomic DNA.
    Nature. 1986 Jul 31-Aug 6;322(6078):477-81 PMID: 3016554
  13. Mapping the limits of the human pseudoautosomal region and a candidate sequence for the male-determining gene.
    Nature. 1987 Jul 16-22;328(6127):273-5 PMID: 2885758
  14. On the nature and extent of XY pairing at meiotic prophase in man.
    Cytogenet Cell Genet. 1984;38(4):241-7 PMID: 6542485
  15. Homologous expressed genes in the human sex chromosome pairing region.
    Nature. 1985 Oct 24-30;317(6039):739-41 PMID: 4058580
  16. Methylation and the X chromosome.
    Bioessays. 1986 May;4(5):204-8 PMID: 3790119
  17. Linkage of the steroid sulfatase gene to the sex-reversed mutation in the mouse.
    Genetics. 1987 Jul;116(3):465-8 PMID: 3475232
  18. KARYOTYPE-PHENOTYPE CORRELATIONS IN GONADAL DYSGENESIS AND THEIR BEARING ON THE PATHOGENESIS OF MALFORMATIONS.
    J Med Genet. 1965 Jun;2(2):142-55 PMID: 14295659
  19. Meitoic crossing-over between the X and Y chromosomes of male mice carrying the sex-reversing (Sxr) factor.
    Nature. 1982 Dec 2;300(5891):443-5 PMID: 6890629
  20. Pseudoautosomal DNA sequences in the pairing region of the human sex chromosomes.
    Nature. 1985 Oct 24-30;317(6039):692-7 PMID: 2997620
  21. The pseudoautosomal region of the human sex chromosomes.
    Cold Spring Harb Symp Quant Biol. 1986;51 Pt 1:221-8 PMID: 3472718
  22. An electrophoretic karyotype for Schizosaccharomyces pombe by pulsed field gel electrophoresis.
    Nucleic Acids Res. 1987 Jun 11;15(11):4481-9 PMID: 3295780
  23. Separation of large DNA molecules by contour-clamped homogeneous electric fields.
    Science. 1986 Dec 19;234(4783):1582-5 PMID: 3538420
  24. Variability at the telomeres of the human X/Y pseudoautosomal region.
    Cold Spring Harb Symp Quant Biol. 1986;51 Pt 1:213-9 PMID: 3034483
  25. Conservation of human-derived pseudoautosomal sequences on the sex chromosomes of the great apes.
    Cytogenet Cell Genet. 1987;45(1):26-9 PMID: 3474106
  26. The Relation of Housing to the Isolation of Scarlet Fever and to Return Cases.
    Proc R Soc Med. 1912;5(Sect Epidemiol State Med):150-70 PMID: 19976308
  27. Pulsed field gradient electrophoresis of DNA digested in agarose allows the sizing of the large duplication unit of a surface antigen gene in trypanosomes.
    Gene. 1986;42(3):313-22 PMID: 3015741
  28. Sex reversal in the mouse (Mus musculus) is caused by a recurrent nonreciprocal crossover involving the x and an aberrant y chromosome.
    Cell. 1982 Feb;28(2):205-16 PMID: 7060127
  29. Differential methylation of hypoxanthine phosphoribosyltransferase genes on active and inactive human X chromosomes.
    Proc Natl Acad Sci U S A. 1984 Mar;81(6):1759-63 PMID: 6324214
  30. High rate of recombination and double crossovers in the mouse pseudoautosomal region during male meiosis.
    Proc Natl Acad Sci U S A. 1987 Oct;84(20):7218-20 PMID: 3478692
  31. The cell surface antigen locus, MIC2X, escapes X-inactivation.
    Am J Hum Genet. 1984 Jul;36(4):777-82 PMID: 6540985
  32. Linkage, physical mapping, and DNA sequence analysis of pseudoautosomal loci on the human X and Y chromosomes.
    Genomics. 1987 Nov;1(3):243-56 PMID: 2895727
  33. Expression of the G6PD locus on the human X chromosome is associated with demethylation of three CpG islands within 100 kb of DNA.
    EMBO J. 1988 Feb;7(2):401-6 PMID: 2835227
  34. Sex chromatin and gene action in the mammalian X-chromosome.
    Am J Hum Genet. 1962 Jun;14:135-48 PMID: 14467629
  35. Mapping of the class II region of the human major histocompatibility complex by pulsed-field gel electrophoresis.
    Nature. 1986 Oct 2-8;323(6087):453-5 PMID: 3020430
  36. The mosaic genome of warm-blooded vertebrates.
    Science. 1985 May 24;228(4702):953-8 PMID: 4001930
  37. Molecular genetics of MIC2: a gene shared by the human X and Y chromosomes.
    Cold Spring Harb Symp Quant Biol. 1986;51 Pt 1:205-12 PMID: 3472717
  38. High frequency of unequal recombination in pseudoautosomal region shown by proviral insertion in transgenic mouse.
    Nature. 1986 Dec 18-31;324(6098):682-5 PMID: 3025741
  39. Genetic homology and crossing over in the X and Y chromosomes of Mammals.
    Hum Genet. 1982;61(2):85-90 PMID: 7129448
  40. A fraction of the mouse genome that is derived from islands of nonmethylated, CpG-rich DNA.
    Cell. 1985 Jan;40(1):91-9 PMID: 2981636
  41. Pseudoautosomal genes in man.
    Development. 1987;101 Suppl:119-25 PMID: 3503709
  42. Normal and abnormal interchanges between the human X and Y chromosomes.
    Development. 1987;101 Suppl:67-74 PMID: 3503725
  43. CpG-rich islands and the function of DNA methylation.
    Nature. 1986 May 15-21;321(6067):209-13 PMID: 2423876
Article Info
Journal
The EMBO journal
Abbr.
EMBO J
ISSN
0261-4189
Published
1988-08-00
Pages
2369-76
Language
English
Region
England
NLM ID
8208664
PMCID
PMC457102
Subset
IM
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