Home LiteratureArticle Details
PMID: 20121095 Published · ppublish English Journal Article Research Support, N.I.H., Extramural Research Support, Non-U.S. Gov't

Natural products version 2.0: connecting genes to molecules.

Journal of the American Chemical Society ·Vol. 132 ·No. 8 ·2010-03-03 ·Pages 2469-93

Walsh CT, Fischbach MA

Abstract

Natural products have played a prominent role in the history of organic chemistry, and they continue to be important as drugs, biological probes, and targets of study for synthetic and analytical chemists. In this Perspective, we explore how connecting Nature's small molecules to the genes that encode them has sparked a renaissance in natural product research, focusing primarily on the biosynthesis of polyketides and non-ribosomal peptides. We survey monomer biogenesis, coupling chemistries from templated and non-templated pathways, and the broad set of tailoring reactions and hybrid pathways that give rise to the diverse scaffolds and functionalization patterns of natural products. We conclude by considering two questions: What would it take to find all natural product scaffolds? What kind of scientists will be studying natural products in the future?

MeSH Terms
Biological Products/genetics,metabolism Genes Genes, Bacterial Macrolides/chemistry,metabolism Peptide Biosynthesis Peptides/chemistry,genetics,metabolism
Chemicals
Biological Products Macrolides Peptides
Authors & Affiliations
2 authors, click to expand affiliations / ORCID
Walsh Christopher T
Department of Biological Chemistry and Molecular Pharmacology, Harvard Medical School, 240 Longwood Avenue, Boston, Massachusetts 02115, USA. christopher_walsh@hms.harvard.edu
Fischbach Michael A
References (302)
302 references, click to expand
  1. Property distributions: differences between drugs, natural products, and molecules from combinatorial chemistry.
    J Chem Inf Comput Sci. 2003 Jan-Feb;43(1):218-27 PMID: 12546556
  2. Crystal structure of the termination module of a nonribosomal peptide synthetase.
    Science. 2008 Aug 1;321(5889):659-63 PMID: 18583577
  3. The hedamycin locus implicates a novel aromatic PKS priming mechanism.
    Chem Biol. 2004 Jul;11(7):959-69 PMID: 15271354
  4. The biosynthetic gene cluster for coronamic acid, an ethylcyclopropyl amino acid, contains genes homologous to amino acid-activating enzymes and thioesterases.
    J Bacteriol. 1994 Dec;176(24):7574-86 PMID: 8002582
  5. A gene cluster for biosynthesis of the sesquiterpenoid antibiotic pentalenolactone in Streptomyces avermitilis.
    Biochemistry. 2006 May 16;45(19):6179-86 PMID: 16681390
  6. Organization of the biosynthetic gene cluster for rapamycin in Streptomyces hygroscopicus: analysis of the enzymatic domains in the modular polyketide synthase.
    Gene. 1996 Feb 22;169(1):9-16 PMID: 8635756
  7. Characterization of the aminocoumarin ligase SimL from the simocyclinone pathway and tandem incubation with NovM,P,N from the novobiocin pathway.
    Biochemistry. 2005 Mar 29;44(12):4949-56 PMID: 15779922
  8. Thirteen posttranslational modifications convert a 14-residue peptide into the antibiotic thiocillin.
    Proc Natl Acad Sci U S A. 2009 Feb 24;106(8):2549-53 PMID: 19196969
  9. Interactions between bacteria and eukaryotes via small molecules.
    Curr Opin Biotechnol. 2006 Jun;17(3):268-73 PMID: 16650977
  10. Chimeras of two isoprenoid synthases catalyze all four coupling reactions in isoprenoid biosynthesis.
    Science. 2007 Apr 6;316(5821):73-6 PMID: 17412950
  11. Enzymatic generation of the chromopyrrolic acid scaffold of rebeccamycin by the tandem action of RebO and RebD.
    Biochemistry. 2005 Dec 6;44(48):15652-63 PMID: 16313168
  12. Polyketide biosynthesis beyond the type I, II and III polyketide synthase paradigms.
    Curr Opin Chem Biol. 2003 Apr;7(2):285-95 PMID: 12714063
  13. An update on lignans: natural products and synthesis.
    Nat Prod Rep. 2009 Oct;26(10):1251-92 PMID: 19779640
  14. Isoprenoid-like alkylations in polyketide biosynthesis.
    Nat Prod Rep. 2008 Oct;25(5):845-53 PMID: 18820753
  15. Unearthing the roots of the terpenome.
    Curr Opin Chem Biol. 2008 Apr;12(2):141-50 PMID: 18249199
  16. The lyngbyatoxin biosynthetic assembly line: chain release by four-electron reduction of a dipeptidyl thioester to the corresponding alcohol.
    J Am Chem Soc. 2007 Dec 26;129(51):15762-3 PMID: 18044902
  17. Origin and True Nature of the Starter Unit for the Rapamycin Polyketide Synthase We thank Dr. Bradley S. Moore for help with the deuterium NMR experiments. This work was supported by grants from The Wellcome Trust (to J.S. and P.F.L.) and from the NIH (AI20264 to H.G.F.).
    Angew Chem Int Ed Engl. 2001 Feb 16;40(4):777-779 PMID: 11241621
  18. Total biosynthesis: in vitro reconstitution of polyketide and nonribosomal peptide pathways.
    Nat Prod Rep. 2008 Aug;25(4):757-93 PMID: 18663394
  19. Taxoid metabolism: Taxoid 14beta-hydroxylase is a cytochrome P450-dependent monooxygenase.
    Arch Biochem Biophys. 2003 May 15;413(2):262-70 PMID: 12729625
  20. The ATP-dependent amide ligases DdaG and DdaF assemble the fumaramoyl-dipeptide scaffold of the dapdiamide antibiotics.
    Biochemistry. 2009 Nov 3;48(43):10467-72 PMID: 19807062
  21. Deoxysugars in glycopeptide antibiotics: enzymatic synthesis of TDP-L-epivancosamine in chloroeremomycin biosynthesis.
    Proc Natl Acad Sci U S A. 2000 Oct 24;97(22):11942-7 PMID: 11035791
  22. Analysis of the indanomycin biosynthetic gene cluster from Streptomyces antibioticus NRRL 8167.
    Chembiochem. 2009 Apr 17;10(6):1064-72 PMID: 19301315
  23. Cyclosporin synthetase. The most complex peptide synthesizing multienzyme polypeptide so far described.
    J Biol Chem. 1990 Jul 5;265(19):11355-60 PMID: 2358465
  24. The C-Glycosyltransferase UrdGT2 is unselective toward d- and l-configured nucleotide-bound rhodinoses.
    J Am Chem Soc. 2003 Apr 23;125(16):4678-9 PMID: 12696864
  25. Structure of cytochrome P450eryF involved in erythromycin biosynthesis.
    Nat Struct Biol. 1995 Feb;2(2):144-53 PMID: 7749919
  26. Strictosidine synthase: mechanism of a Pictet-Spengler catalyzing enzyme.
    J Am Chem Soc. 2008 Jan 16;130(2):710-23 PMID: 18081287
  27. Excision of the epothilone synthetase B cyclization domain and demonstration of in trans condensation/cyclodehydration activity.
    Biochemistry. 2005 Oct 11;44(40):13385-93 PMID: 16201763
  28. An unusually large multifunctional polypeptide in the erythromycin-producing polyketide synthase of Saccharopolyspora erythraea.
    Nature. 1990 Nov 8;348(6297):176-8 PMID: 2234082
  29. Exploiting the mosaic structure of trans-acyltransferase polyketide synthases for natural product discovery and pathway dissection.
    Nat Biotechnol. 2008 Feb;26(2):225-33 PMID: 18223641
  30. Formation of unusual sugars: mechanistic studies and biosynthetic applications.
    Annu Rev Biochem. 2002;71:701-54 PMID: 12045109
  31. Thaxtomin biosynthesis: the path to plant pathogenicity in the genus Streptomyces.
    Antonie Van Leeuwenhoek. 2008 Jun;94(1):3-10 PMID: 18392685
  32. Investigating the initial steps in the biosynthesis of cyanobacterial sunscreen scytonemin.
    J Am Chem Soc. 2008 Nov 19;130(46):15260-1 PMID: 18954141
  33. Biosynthesis of the orthosomycin antibiotic avilamycin A: deductions from the molecular analysis of the avi biosynthetic gene cluster of Streptomyces viridochromogenes Tü57 and production of new antibiotics.
    Chem Biol. 2001 Jun;8(6):569-81 PMID: 11410376
  34. Structural insights into nonribosomal peptide enzymatic assembly lines.
    Nat Prod Rep. 2009 Aug;26(8):987-1000 PMID: 19636447
  35. Marcel Faber Roundtable: is our antibiotic pipeline unproductive because of starvation, constipation or lack of inspiration?
    J Ind Microbiol Biotechnol. 2006 Jul;33(7):507-13 PMID: 16418869
  36. Characterisation of genes involved in biosynthesis of coronafacic acid, the polyketide component of the phytotoxin coronatine.
    Gene. 1996 Dec 12;183(1-2):167-73 PMID: 8996103
  37. Identification and structural basis of the reaction catalyzed by CYP121, an essential cytochrome P450 in Mycobacterium tuberculosis.
    Proc Natl Acad Sci U S A. 2009 May 5;106(18):7426-31 PMID: 19416919
  38. An enzymatic cyclopentyl[b]indole formation involved in scytonemin biosynthesis.
    J Am Chem Soc. 2009 Oct 21;131(41):14648-9 PMID: 19780555
  39. Advancing chemistry and biology through diversity-oriented synthesis of natural product-like libraries.
    Curr Opin Chem Biol. 2005 Jun;9(3):248-58 PMID: 15939326
  40. Silencing of tryptamine biosynthesis for production of nonnatural alkaloids in plant culture.
    Proc Natl Acad Sci U S A. 2009 Aug 18;106(33):13673-8 PMID: 19666570
  41. Structure of isopenicillin N synthase complexed with substrate and the mechanism of penicillin formation.
    Nature. 1997 Jun 19;387(6635):827-30 PMID: 9194566
  42. A complete gene cluster from Streptomyces nanchangensis NS3226 encoding biosynthesis of the polyether ionophore nanchangmycin.
    Chem Biol. 2003 May;10(5):431-41 PMID: 12770825
  43. Plants as source of drugs.
    Toxicon. 2001 May;39(5):603-13 PMID: 11072038
  44. Biosynthesis of the sesquiterpene antibiotic albaflavenone in Streptomyces coelicolor. Mechanism and stereochemistry of the enzymatic formation of epi-isozizaene.
    J Am Chem Soc. 2009 May 13;131(18):6332-3 PMID: 19385616
  45. Biosynthesis of sulfated glycopeptide antibiotics by using the sulfotransferase StaL.
    Chem Biol. 2006 Feb;13(2):171-81 PMID: 16492565
  46. Exploiting the reversibility of natural product glycosyltransferase-catalyzed reactions.
    Science. 2006 Sep 1;313(5791):1291-4 PMID: 16946071
  47. Peptide macrocyclization: the reductase of the nostocyclopeptide synthetase triggers the self-assembly of a macrocyclic imine.
    J Am Chem Soc. 2006 Dec 27;128(51):16478-9 PMID: 17177378
  48. Organic chemistry: Synthetic lessons from nature.
    Nature. 2009 Jun 11;459(7248):786-7 PMID: 19516330
  49. Crystal structure of OxyB, a cytochrome P450 implicated in an oxidative phenol coupling reaction during vancomycin biosynthesis.
    J Biol Chem. 2002 Dec 6;277(49):47476-85 PMID: 12207020
  50. Sequence, expression and transcriptional analysis of the coronafacate ligase-encoding gene required for coronatine biosynthesis by Pseudomonas syringae.
    Gene. 1995 Feb 3;153(1):17-23 PMID: 7883180
  51. Opportunities for enzyme engineering in natural product biosynthesis.
    Curr Opin Chem Biol. 2009 Feb;13(1):35-42 PMID: 19201253
  52. In vitro characterization of IroB, a pathogen-associated C-glycosyltransferase.
    Proc Natl Acad Sci U S A. 2005 Jan 18;102(3):571-6 PMID: 15598734
  53. Translational regulation via L11: molecular switches on the ribosome turned on and off by thiostrepton and micrococcin.
    Mol Cell. 2008 Apr 11;30(1):26-38 PMID: 18406324
  54. Cytochrome p450 taxadiene 5alpha-hydroxylase, a mechanistically unusual monooxygenase catalyzing the first oxygenation step of taxol biosynthesis.
    Chem Biol. 2004 Mar;11(3):379-87 PMID: 15123267
  55. Triggering cryptic natural product biosynthesis in microorganisms.
    Org Biomol Chem. 2009 May 7;7(9):1753-60 PMID: 19590766
  56. A new family of ATP-dependent oligomerization-macrocyclization biocatalysts.
    Nat Chem Biol. 2007 Oct;3(10):652-6 PMID: 17704771
  57. Reconstitution and characterization of the Vibrio cholerae vibriobactin synthetase from VibB, VibE, VibF, and VibH.
    Biochemistry. 2000 Dec 19;39(50):15522-30 PMID: 11112538
  58. Structures of MLSBK antibiotics bound to mutated large ribosomal subunits provide a structural explanation for resistance.
    Cell. 2005 Apr 22;121(2):257-70 PMID: 15851032
  59. Biosynthesis of plant isoprenoids: perspectives for microbial engineering.
    Annu Rev Plant Biol. 2009;60:335-55 PMID: 19575586
  60. Indolocarbazole antitumour compounds by combinatorial biosynthesis.
    Curr Opin Chem Biol. 2009 Apr;13(2):152-60 PMID: 19251468
  61. Terpenoid metabolism.
    Plant Cell. 1995 Jul;7(7):1015-26 PMID: 7640522
  62. Biosynthesis and structures of cyclomarins and cyclomarazines, prenylated cyclic peptides of marine actinobacterial origin.
    J Am Chem Soc. 2008 Apr 2;130(13):4507-16 PMID: 18331040
  63. Microbial genomes: dealing with diversity.
    Curr Opin Microbiol. 2001 Jun;4(3):285-9 PMID: 11378480
  64. Cyclodipeptide synthases are a family of tRNA-dependent peptide bond-forming enzymes.
    Nat Chem Biol. 2009 Jun;5(6):414-20 PMID: 19430487
  65. Assembly-line enzymology for polyketide and nonribosomal Peptide antibiotics: logic, machinery, and mechanisms.
    Chem Rev. 2006 Aug;106(8):3468-96 PMID: 16895337
  66. Thioesterase-like role for fungal PKS-NRPS hybrid reductive domains.
    J Am Chem Soc. 2008 Aug 20;130(33):11149-55 PMID: 18652469
  67. Molecular cloning of a cytochrome P450 taxane 10 beta-hydroxylase cDNA from Taxus and functional expression in yeast.
    Proc Natl Acad Sci U S A. 2001 Feb 13;98(4):1501-6 PMID: 11171980
  68. Protein assembly line components in prodigiosin biosynthesis: characterization of PigA,G,H,I,J.
    J Am Chem Soc. 2006 Oct 4;128(39):12600-1 PMID: 17002325
  69. Reconstitution and characterization of the Escherichia coli enterobactin synthetase from EntB, EntE, and EntF.
    Biochemistry. 1998 Feb 24;37(8):2648-59 PMID: 9485415
  70. Genes and enzymes involved in bacterial isoprenoid biosynthesis.
    Curr Opin Chem Biol. 2009 Apr;13(2):180-8 PMID: 19318289
  71. New developments in microbial interspecies signaling.
    Curr Opin Microbiol. 2009 Apr;12(2):205-14 PMID: 19251475
  72. GliP, a multimodular nonribosomal peptide synthetase in Aspergillus fumigatus, makes the diketopiperazine scaffold of gliotoxin.
    Biochemistry. 2006 Dec 19;45(50):15029-38 PMID: 17154540
  73. Post-translational modification in microviridin biosynthesis.
    Chembiochem. 2008 Dec 15;9(18):3066-73 PMID: 19035375
  74. Automated synthesis of peptides.
    Science. 1965 Oct 8;150(3693):178-85 PMID: 5319951
  75. Plants as a source of anti-cancer agents.
    J Ethnopharmacol. 2005 Aug 22;100(1-2):72-9 PMID: 16009521
  76. Complete genome sequence and comparative analysis of the industrial microorganism Streptomyces avermitilis.
    Nat Biotechnol. 2003 May;21(5):526-31 PMID: 12692562
  77. Diversity, regulation, and evolution of the gibberellin biosynthetic pathway in fungi compared to plants and bacteria.
    Phytochemistry. 2009 Oct-Nov;70(15-16):1876-93 PMID: 19560174
  78. Biosynthesis of the antibiotic bacillaene, the product of a giant polyketide synthase complex of the trans-AT family.
    Angew Chem Int Ed Engl. 2007;46(43):8195-7 PMID: 17886826
  79. Escherichia coli allows efficient modular incorporation of newly isolated quinomycin biosynthetic enzyme into echinomycin biosynthetic pathway for rational design and synthesis of potent antibiotic unnatural natural product.
    J Am Chem Soc. 2009 Jul 8;131(26):9347-53 PMID: 19514719
  80. Regulation of secondary metabolism in streptomycetes.
    Curr Opin Microbiol. 2005 Apr;8(2):208-15 PMID: 15802254
  81. Molecular cloning and characterization of a cytochrome P450 taxoid 2alpha-hydroxylase involved in Taxol biosynthesis.
    Arch Biochem Biophys. 2004 Jul 1;427(1):48-57 PMID: 15178487
  82. Synthetic biology. Microbes made to order.
    Science. 2004 Jan 9;303(5655):158-61 PMID: 14715986
  83. Connecting genes to metabolites by a systems biology approach.
    Proc Natl Acad Sci U S A. 2004 Jul 6;101(27):9949-50 PMID: 15226495
  84. The genes lmbB1 and lmbB2 of Streptomyces lincolnensis encode enzymes involved in the conversion of L-tyrosine to propylproline during the biosynthesis of the antibiotic lincomycin A.
    Arch Microbiol. 1998 Apr;169(4):322-32 PMID: 9531633
  85. Identification of a gene cluster of polyether antibiotic lasalocid from Streptomyces lasaliensis.
    Biosci Biotechnol Biochem. 2009 Jan;73(1):169-76 PMID: 19129623
  86. Genome mining for novel natural product discovery.
    J Med Chem. 2008 May 8;51(9):2618-28 PMID: 18393407
  87. Thiostrepton biosynthesis: prototype for a new family of bacteriocins.
    J Am Chem Soc. 2009 Apr 1;131(12):4327-34 PMID: 19265401
  88. Characterization of the formation of the pyrrole moiety during clorobiocin and coumermycin A1 biosynthesis.
    Biochemistry. 2005 Mar 1;44(8):2770-80 PMID: 15723521
  89. TioS T-TE--a prototypical thioesterase responsible for cyclodimerization of the quinoline- and quinoxaline-type class of chromodepsipeptides.
    FEBS J. 2009 Mar;276(6):1641-53 PMID: 19220461
  90. Altering the glycosylation pattern of bioactive compounds.
    Trends Biotechnol. 2001 Nov;19(11):449-56 PMID: 11602309
  91. Biosynthesis of the terpene phenalinolactone in Streptomyces sp. Tü6071: analysis of the gene cluster and generation of derivatives.
    Chem Biol. 2006 Apr;13(4):365-77 PMID: 16632249
  92. How many antibiotics are produced by the genus Streptomyces?
    Arch Microbiol. 2001 Nov;176(5):386-90 PMID: 11702082
  93. Crystal structure of the non-heme iron dioxygenase PtlH in pentalenolactone biosynthesis.
    J Biol Chem. 2007 Dec 14;282(50):36552-60 PMID: 17942405
  94. The impact of transcriptome and proteome analyses on antibiotic drug discovery.
    Curr Opin Microbiol. 2004 Oct;7(5):451-9 PMID: 15451499
  95. Discovering the hidden secondary metabolome of Myxococcus xanthus: a study of intraspecific diversity.
    Appl Environ Microbiol. 2008 May;74(10):3058-68 PMID: 18378661
  96. Characterization of kinetics and products of the Baeyer-Villiger oxygenase MtmOIV, the key enzyme of the biosynthetic pathway toward the natural product anticancer drug mithramycin from Streptomyces argillaceus.
    J Am Chem Soc. 2005 Dec 21;127(50):17594-5 PMID: 16351075
  97. Biosynthetic intermediate analysis and functional homology reveal a saxitoxin gene cluster in cyanobacteria.
    Appl Environ Microbiol. 2008 Jul;74(13):4044-53 PMID: 18487408
  98. Pentalenolactone biosynthesis. Molecular cloning and assignment of biochemical function to PtlI, a cytochrome P450 of Streptomyces avermitilis.
    J Am Chem Soc. 2006 Oct 11;128(40):13036-7 PMID: 17017767
  99. Enzymatic generation of the antimetabolite gamma,gamma-dichloroaminobutyrate by NRPS and mononuclear iron halogenase action in a streptomycete.
    Chem Biol. 2006 Nov;13(11):1183-91 PMID: 17114000
  100. The identification of bacillaene, the product of the PksX megacomplex in Bacillus subtilis.
    Proc Natl Acad Sci U S A. 2007 Jan 30;104(5):1506-9 PMID: 17234808
  101. Advances in the understanding and use of the genomic base of microbial secondary metabolite biosynthesis for the discovery of new natural products.
    J Nat Prod. 2009 Mar 27;72(3):566-72 PMID: 19199817
  102. The biosynthetic gene cluster for the macrolactone ring of the immunosuppressant FK506.
    Eur J Biochem. 1998 Sep 15;256(3):528-34 PMID: 9780228
  103. Complete genome sequence of the erythromycin-producing bacterium Saccharopolyspora erythraea NRRL23338.
    Nat Biotechnol. 2007 Apr;25(4):447-53 PMID: 17369815
  104. Chain termination steps in nonribosomal peptide synthetase assembly lines: directed acyl-S-enzyme breakdown in antibiotic and siderophore biosynthesis.
    Chembiochem. 2001 Feb 2;2(2):99-107 PMID: 11828432
  105. Pyrrole, pyrrolidine, pyridine, piperidine and tropane alkaloids.
    Nat Prod Rep. 2000 Oct;17(5):435-46 PMID: 11072891
  106. The specificity-conferring code of adenylation domains in nonribosomal peptide synthetases.
    Chem Biol. 1999 Aug;6(8):493-505 PMID: 10421756
  107. Polyketide synthases and nonribosomal peptide synthetases: the emerging view from bacterial genomics.
    Nat Prod Rep. 2007 Oct;24(5):1073-109 PMID: 17898898
  108. Deciphering the late steps in the biosynthesis of the anti-tumour indolocarbazole staurosporine: sugar donor substrate flexibility of the StaG glycosyltransferase.
    Mol Microbiol. 2005 Oct;58(1):17-27 PMID: 16164546
  109. The parallel and convergent universes of polyketide synthases and nonribosomal peptide synthetases.
    Chem Biol. 1999 Dec;6(12):R319-25 PMID: 10631508
  110. Analysis of the tetronomycin gene cluster: insights into the biosynthesis of a polyether tetronate antibiotic.
    Chembiochem. 2008 May 5;9(7):1136-45 PMID: 18404760
  111. Thiopeptide biosynthesis featuring ribosomally synthesized precursor peptides and conserved posttranslational modifications.
    Chem Biol. 2009 Feb 27;16(2):141-7 PMID: 19246004
  112. On the biosynthetic origin of methoxymalonyl-acyl carrier protein, the substrate for incorporation of "glycolate" units into ansamitocin and soraphen A.
    J Am Chem Soc. 2006 Nov 8;128(44):14325-36 PMID: 17076505
  113. Tailoring enzymes that modify nonribosomal peptides during and after chain elongation on NRPS assembly lines.
    Curr Opin Chem Biol. 2001 Oct;5(5):525-34 PMID: 11578925
  114. RECENT ADVANCES IN UNDERSTANDING LIGNIN BIOSYNTHESIS.
    Annu Rev Plant Physiol Plant Mol Biol. 1998 Jun;49:585-609 PMID: 15012247
  115. Structure and action of the C-C bond-forming glycosyltransferase UrdGT2 involved in the biosynthesis of the antibiotic urdamycin.
    J Mol Biol. 2007 Sep 7;372(1):67-76 PMID: 17640665
  116. Metabolic reprogramming of periwinkle plant culture.
    Nat Chem Biol. 2009 Mar;5(3):151-3 PMID: 19151732
  117. Carrier protein structure and recognition in polyketide and nonribosomal peptide biosynthesis.
    Biochemistry. 2006 Dec 19;45(50):14869-79 PMID: 17154525
  118. Natural combinatorial peptide libraries in cyanobacterial symbionts of marine ascidians.
    Nat Chem Biol. 2006 Dec;2(12):729-35 PMID: 17086177
  119. Mapping and molecular modeling of S-adenosyl-L-methionine binding sites in N-methyltransferase domains of the multifunctional polypeptide cyclosporin synthetase.
    J Biol Chem. 2003 Jan 10;278(2):1137-48 PMID: 12399454
  120. Terrequinone A biosynthesis through L-tryptophan oxidation, dimerization and bisprenylation.
    Nat Chem Biol. 2007 Sep;3(9):584-92 PMID: 17704773
  121. Asymmetric catalysis mediated by synthetic peptides.
    Chem Rev. 2007 Dec;107(12):5759-812 PMID: 18072809
  122. Natural products as sources of new drugs over the last 25 years.
    J Nat Prod. 2007 Mar;70(3):461-77 PMID: 17309302
  123. Kinetic analysis of teicoplanin glycosyltransferases and acyltransferase reveal ordered tailoring of aglycone scaffold to reconstitute mature teicoplanin.
    J Am Chem Soc. 2007 Aug 22;129(33):10082-3 PMID: 17661468
  124. Biosynthesis and attachment of novel bacterial polyketide synthase starter units.
    Nat Prod Rep. 2002 Feb;19(1):70-99 PMID: 11902441
  125. Biosynthesis inspired Diels-Alder route to pyridines: synthesis of the 2,3-dithiazolylpyridine core of the thiopeptide antibiotics.
    Chem Commun (Camb). 2002 Aug 21;(16):1760-1 PMID: 12196986
  126. Thiopeptide antibiotics.
    Chem Rev. 2005 Feb;105(2):685-714 PMID: 15700961
  127. Rational design and assembly of synthetic trimodular polyketide synthases.
    Chem Biol. 2007 Feb;14(2):143-51 PMID: 17317568
  128. Substrate specificity and scope of MvdD, a GRASP-like ligase from the microviridin biosynthetic gene cluster.
    ACS Chem Biol. 2009 Jun 19;4(6):429-34 PMID: 19445532
  129. Accumulation of an E,E,E-triene by the monensin-producing polyketide synthase when oxidative cyclization is blocked.
    Angew Chem Int Ed Engl. 2005 Nov 4;44(43):7075-8 PMID: 16217816
  130. Patellamide A and C biosynthesis by a microcin-like pathway in Prochloron didemni, the cyanobacterial symbiont of Lissoclinum patella.
    Proc Natl Acad Sci U S A. 2005 May 17;102(20):7315-20 PMID: 15883371
  131. Cyclopiazonic acid biosynthesis in Aspergillus sp.: characterization of a reductase-like R* domain in cyclopiazonate synthetase that forms and releases cyclo-acetoacetyl-L-tryptophan.
    Biochemistry. 2009 Sep 15;48(36):8746-57 PMID: 19663400
  132. Convergence of isoprene and polyketide biosynthetic machinery: isoprenyl-S-carrier proteins in the pksX pathway of Bacillus subtilis.
    Proc Natl Acad Sci U S A. 2006 Jun 13;103(24):8977-82 PMID: 16757561
  133. Genome sequence of the streptomycin-producing microorganism Streptomyces griseus IFO 13350.
    J Bacteriol. 2008 Jun;190(11):4050-60 PMID: 18375553
  134. Amide N-glycosylation by Asm25, an N-glycosyltransferase of ansamitocins.
    Chem Biol. 2008 Aug 25;15(8):863-74 PMID: 18721757
  135. Modular organization of genes required for complex polyketide biosynthesis.
    Science. 1991 May 3;252(5006):675-9 PMID: 2024119
  136. Polyketide-chain branching by an enzymatic Michael addition.
    Angew Chem Int Ed Engl. 2009;48(27):5001-4 PMID: 19266509
  137. Investigation of early tailoring reactions in the oxytetracycline biosynthetic pathway.
    J Biol Chem. 2007 Aug 31;282(35):25717-25 PMID: 17631493
  138. Genome mining in Streptomyces avermitilis: A biochemical Baeyer-Villiger reaction and discovery of a new branch of the pentalenolactone family tree.
    Biochemistry. 2009 Jul 14;48(27):6431-40 PMID: 19485417
  139. Genome sequence of an industrial microorganism Streptomyces avermitilis: deducing the ability of producing secondary metabolites.
    Proc Natl Acad Sci U S A. 2001 Oct 9;98(21):12215-20 PMID: 11572948
  140. Next-generation DNA sequencing.
    Nat Biotechnol. 2008 Oct;26(10):1135-45 PMID: 18846087
  141. Ribosomal synthesis of tricyclic depsipeptides in bloom-forming cyanobacteria.
    Angew Chem Int Ed Engl. 2008;47(40):7756-9 PMID: 18683268
  142. Nosiheptide biosynthesis featuring a unique indole side ring formation on the characteristic thiopeptide framework.
    ACS Chem Biol. 2009 Oct 16;4(10):855-64 PMID: 19678698
  143. Pathogenic fungus harbours endosymbiotic bacteria for toxin production.
    Nature. 2005 Oct 6;437(7060):884-8 PMID: 16208371
  144. The biosynthesis of polyketide-derived polycyclic ethers.
    Nat Prod Rep. 2009 Feb;26(2):266-80 PMID: 19177224
  145. Characterization of the saframycin A gene cluster from Streptomyces lavendulae NRRL 11002 revealing a nonribosomal peptide synthetase system for assembling the unusual tetrapeptidyl skeleton in an iterative manner.
    J Bacteriol. 2008 Jan;190(1):251-63 PMID: 17981978
  146. Timing of epimerization and condensation reactions in nonribosomal peptide assembly lines: kinetic analysis of phenylalanine activating elongation modules of tyrocidine synthetase B.
    Biochemistry. 2002 Jul 23;41(29):9184-96 PMID: 12119033
  147. Staurosporine, a potent inhibitor of phospholipid/Ca++dependent protein kinase.
    Biochem Biophys Res Commun. 1986 Mar 13;135(2):397-402 PMID: 3457562
  148. Mechanism of taxadiene synthase, a diterpene cyclase that catalyzes the first step of taxol biosynthesis in Pacific yew.
    Biochemistry. 1996 Mar 5;35(9):2968-77 PMID: 8608134
  149. Biosynthesis of pipecolic acid by RapL, a lysine cyclodeaminase encoded in the rapamycin gene cluster.
    J Am Chem Soc. 2006 Mar 22;128(11):3838-47 PMID: 16536560
  150. Evidence that biosynthesis of the neurotoxic alkaloids anatoxin-a and homoanatoxin-a in the cyanobacterium Oscillatoria PCC 6506 occurs on a modular polyketide synthase initiated by L-proline.
    J Am Chem Soc. 2009 Jun 10;131(22):7512-3 PMID: 19489636
  151. Regulation of alkyl-dihydrothiazole-carboxylates (ATCs) by iron and the pyochelin gene cluster in Pseudomonas aeruginosa.
    ACS Chem Biol. 2009 Aug 21;4(8):617-23 PMID: 19621937
  152. Genome mining in Streptomyces coelicolor: molecular cloning and characterization of a new sesquiterpene synthase.
    J Am Chem Soc. 2006 May 10;128(18):6022-3 PMID: 16669656
  153. Genome sequencing reveals complex secondary metabolome in the marine actinomycete Salinispora tropica.
    Proc Natl Acad Sci U S A. 2007 Jun 19;104(25):10376-81 PMID: 17563368
  154. Cloning and characterization of a polyketide synthase gene from Streptomyces fradiae Tü2717, which carries the genes for biosynthesis of the angucycline antibiotic urdamycin A and a gene probably involved in its oxygenation.
    J Bacteriol. 1995 Nov;177(21):6126-36 PMID: 7592377
  155. Exploring the substrate specificity of OxyB, a phenol coupling P450 enzyme involved in vancomycin biosynthesis.
    Org Biomol Chem. 2008 Aug 21;6(16):2861-7 PMID: 18688478
  156. Stereoselective bimolecular phenoxy radical coupling by an auxiliary (dirigent) protein without an active center.
    Science. 1997 Jan 17;275(5298):362-6 PMID: 8994027
  157. A common mechanism for branching, cyclopropanation, and cyclobutanation reactions in the isoprenoid biosynthetic pathway.
    J Am Chem Soc. 2008 Feb 13;130(6):1966-71 PMID: 18198872
  158. Glivec (STI571, imatinib), a rationally developed, targeted anticancer drug.
    Nat Rev Drug Discov. 2002 Jul;1(7):493-502 PMID: 12120256
  159. The biosynthetic gene cluster for the antitumor drug bleomycin from Streptomyces verticillus ATCC15003 supporting functional interactions between nonribosomal peptide synthetases and a polyketide synthase.
    Chem Biol. 2000 Aug;7(8):623-42 PMID: 11048953
  160. Siderophores of Bacillus anthracis, Bacillus cereus, and Bacillus thuringiensis.
    Biochem Biophys Res Commun. 2006 Sep 15;348(1):320-5 PMID: 16875672
  161. Abyssomicin C-A polycyclic antibiotic from a marine Verrucosispora strain as an inhibitor of the p-aminobenzoic acid/tetrahydrofolate biosynthesis pathway.
    Angew Chem Int Ed Engl. 2004 May 3;43(19):2574-6 PMID: 15127456
  162. The biosynthetic logic of polyketide diversity.
    Angew Chem Int Ed Engl. 2009;48(26):4688-716 PMID: 19514004
  163. High-level production of amorpha-4,11-diene, a precursor of the antimalarial agent artemisinin, in Escherichia coli.
    PLoS One. 2009;4(2):e4489 PMID: 19221601
  164. Heterologous expression and genetic engineering of the phenalinolactone biosynthetic gene cluster by using red/ET recombineering.
    Chembiochem. 2008 Feb 15;9(3):447-54 PMID: 18157854
  165. Generation of new landomycins with altered saccharide patterns through over-expression of the glycosyltransferase gene lanGT3 in the biosynthetic gene cluster of landomycin A in Streptomyces cyanogenus S-136.
    Chembiochem. 2007 Jan 2;8(1):83-8 PMID: 17139690
  166. Unusual biosynthesis of leupyrrins in the myxobacterium Sorangium cellulosum.
    Angew Chem Int Ed Engl. 2004 Aug 13;43(32):4163-7 PMID: 15307077
  167. Specificity of the N-benzoyl transferase responsible for the last step of Taxol biosynthesis.
    Arch Biochem Biophys. 2008 Sep 15;477(2):384-9 PMID: 18621016
  168. Substrate specificity of 6-deoxyerythronolide B hydroxylase, a bacterial cytochrome P450 of erythromycin A biosynthesis.
    Biochemistry. 1993 Mar 2;32(8):1905-13 PMID: 8448148
  169. Engineering the glycosylation of natural products in actinomycetes.
    Trends Microbiol. 2007 May;15(5):219-32 PMID: 17412593
  170. Crystal structure of OxyC, a cytochrome P450 implicated in an oxidative C-C coupling reaction during vancomycin biosynthesis.
    J Biol Chem. 2003 Nov 21;278(47):46727-33 PMID: 12888556
  171. Iteratively acting glycosyltransferases involved in the hexasaccharide biosynthesis of landomycin A.
    Chem Biol. 2005 Jul;12(7):725-9 PMID: 16039521
  172. Biosynthesis of the salinosporamide A polyketide synthase substrate chloroethylmalonyl-coenzyme A from S-adenosyl-L-methionine.
    Proc Natl Acad Sci U S A. 2009 Jul 28;106(30):12295-300 PMID: 19590008
  173. Nanomole-scale natural products discovery.
    Curr Opin Drug Discov Devel. 2009 Mar;12(2):197-206 PMID: 19333865
  174. Vancomycin assembly: nature's way.
    Angew Chem Int Ed Engl. 2003 Feb 17;42(7):730-65 PMID: 12596194
  175. Pyocyanin isolated from a marine microbial population: synergistic production between two distinct bacterial species and mode of action.
    Chem Biol. 2006 Dec;13(12):1349-59 PMID: 17185230
  176. Gene clusters for beta-lactam antibiotics and control of their expression: why have clusters evolved, and from where did they originate?
    Int Microbiol. 2006 Mar;9(1):9-19 PMID: 16636985
  177. Tandem action of glycosyltransferases in the maturation of vancomycin and teicoplanin aglycones: novel glycopeptides.
    Biochemistry. 2001 Apr 17;40(15):4745-55 PMID: 11294642
  178. Predictive, structure-based model of amino acid recognition by nonribosomal peptide synthetase adenylation domains.
    Chem Biol. 2000 Mar;7(3):211-24 PMID: 10712928
  179. Total synthesis of eudesmane terpenes by site-selective C-H oxidations.
    Nature. 2009 Jun 11;459(7248):824-8 PMID: 19440196
  180. Characterization of the cereulide NRPS alpha-hydroxy acid specifying modules: activation of alpha-keto acids and chiral reduction on the assembly line.
    J Am Chem Soc. 2006 Aug 23;128(33):10698-9 PMID: 16910662
  181. Chemical biology of tetracycline antibiotics.
    Biochem Cell Biol. 2008 Apr;86(2):124-36 PMID: 18443626
  182. Designed divergent evolution of enzyme function.
    Nature. 2006 Apr 20;440(7087):1078-82 PMID: 16495946
  183. Multienzyme docking in hybrid megasynthetases.
    Nat Chem Biol. 2008 Jan;4(1):75-81 PMID: 18066054
  184. The role of carbohydrates in biologically active natural products.
    Nat Prod Rep. 1997 Apr;14(2):99-110 PMID: 9149408
  185. The enzymology of clavam and carbapenem biosynthesis.
    Chem Commun (Camb). 2005 Sep 14;(34):4251-63 PMID: 16113715
  186. Engineered urdamycin glycosyltransferases are broadened and altered in substrate specificity.
    Chem Biol. 2002 Mar;9(3):287-95 PMID: 11927254
  187. Intramolecular cyclizations of polyketide biosynthesis: mining for a "Diels-Alderase"?
    Org Biomol Chem. 2008 Dec 21;6(24):4483-93 PMID: 19039353
  188. Pentalenolactone biosynthesis: Molecular cloning and assignment of biochemical function to PtlF, a short-chain dehydrogenase from Streptomyces avermitilis, and identification of a new biosynthetic intermediate.
    Arch Biochem Biophys. 2007 Mar 15;459(2):233-40 PMID: 17178094
  189. Cloning and characterization of a gene cluster from Streptomyces cyanogenus S136 probably involved in landomycin biosynthesis.
    FEMS Microbiol Lett. 1999 Jan 15;170(2):381-7 PMID: 9933932
  190. Structure and function of the glycopeptide N-methyltransferase MtfA, a tool for the biosynthesis of modified glycopeptide antibiotics.
    Chem Biol. 2009 Apr 24;16(4):401-10 PMID: 19389626
  191. Characterization of a carbonyl-conjugated polyene precursor in 10-membered enediyne biosynthesis.
    J Am Chem Soc. 2008 Jul 2;130(26):8142-3 PMID: 18529057
  192. The biosynthetic potential of myxobacteria and their impact in drug discovery.
    Curr Opin Drug Discov Devel. 2009 Mar;12(2):220-30 PMID: 19333867
  193. Recent advances in the biosynthetic studies of lovastatin.
    Curr Opin Drug Discov Devel. 2001 Mar;4(2):229-36 PMID: 11378962
  194. Working outside the protein-synthesis rules: insights into non-ribosomal peptide synthesis.
    J Pept Sci. 2009 Dec;15(12):799-807 PMID: 19827002
  195. Production of octaketide polyenes by the calicheamicin polyketide synthase CalE8: implications for the biosynthesis of enediyne core structures.
    J Am Chem Soc. 2009 Sep 9;131(35):12564-6 PMID: 19689130
  196. The calicheamicin gene cluster and its iterative type I enediyne PKS.
    Science. 2002 Aug 16;297(5584):1173-6 PMID: 12183629
  197. The 2.7-Angstrom crystal structure of a 194-kDa homodimeric fragment of the 6-deoxyerythronolide B synthase.
    Proc Natl Acad Sci U S A. 2006 Jul 25;103(30):11124-9 PMID: 16844787
  198. Epothilone biosynthesis: assembly of the methylthiazolylcarboxy starter unit on the EpoB subunit.
    Chem Biol. 2001 Sep;8(9):899-912 PMID: 11564558
  199. Comparative analysis and insights into the evolution of gene clusters for glycopeptide antibiotic biosynthesis.
    Mol Genet Genomics. 2005 Aug;274(1):40-50 PMID: 16007453
  200. Taxol biosynthesis: Molecular cloning and characterization of a cytochrome P450 taxoid 7 beta-hydroxylase.
    Chem Biol. 2004 May;11(5):663-72 PMID: 15157877
  201. Evolving biosynthetic tangos negotiate mechanistic landscapes.
    Nat Chem Biol. 2008 Apr;4(4):217-22 PMID: 18347585
  202. A latent oxazoline electrophile for N-O-C bond formation in pseudomonine biosynthesis.
    J Am Chem Soc. 2008 Sep 17;130(37):12282-4 PMID: 18710233
  203. Extending the biosynthetic repertoire in ribosomal peptide assembly.
    Angew Chem Int Ed Engl. 2008;47(49):9386-8 PMID: 18846537
  204. Dirigent-mediated podophyllotoxin biosynthesis in Linum flavum and Podophyllum peltatum.
    Phytochemistry. 2000 Nov;55(6):537-49 PMID: 11130663
  205. Incorporation of nonmethyl branches by isoprenoid-like logic: multiple beta-alkylation events in the biosynthesis of myxovirescin A1.
    Chem Biol. 2007 Jul;14(7):835-46 PMID: 17656320
  206. Glycopeptide antibiotic biosynthesis: enzymatic assembly of the dedicated amino acid monomer (S)-3,5-dihydroxyphenylglycine.
    Proc Natl Acad Sci U S A. 2001 Dec 18;98(26):14901-6 PMID: 11752437
  207. The Pseudomonas phytotoxin coronatine mimics octadecanoid signalling molecules of higher plants.
    FEBS Lett. 1994 May 23;345(1):9-13 PMID: 8194607
  208. Natural-product sugar biosynthesis and enzymatic glycodiversification.
    Angew Chem Int Ed Engl. 2008;47(51):9814-59 PMID: 19058170
  209. Overproduction and characterization of the erythromycin C-12 hydroxylase, EryK.
    Biochemistry. 1995 Feb 14;34(6):1858-66 PMID: 7849045
  210. Characterization of the surfactin synthetase C-terminal thioesterase domain as a cyclic depsipeptide synthase.
    Biochemistry. 2002 Nov 12;41(45):13350-9 PMID: 12416979
  211. Biosynthesis of L-p-hydroxyphenylglycine, a non-proteinogenic amino acid constituent of peptide antibiotics.
    Chem Biol. 2000 Dec;7(12):931-42 PMID: 11137816
  212. Glycosyltransferases: structures, functions, and mechanisms.
    Annu Rev Biochem. 2008;77:521-55 PMID: 18518825
  213. A phosphopantetheinylating polyketide synthase producing a linear polyene to initiate enediyne antitumor antibiotic biosynthesis.
    Proc Natl Acad Sci U S A. 2008 Feb 5;105(5):1460-5 PMID: 18223152
  214. Architectural self-construction in nature and chemical synthesis.
    Bioorg Med Chem. 2003 Jul 31;11(15):3225-8 PMID: 12837531
  215. Drug discovery and natural products: end of an era or an endless frontier?
    Science. 2009 Jul 10;325(5937):161-5 PMID: 19589993
  216. The FK520 gene cluster of Streptomyces hygroscopicus var. ascomyceticus (ATCC 14891) contains genes for biosynthesis of unusual polyketide extender units.
    Gene. 2000 Jun 13;251(1):81-90 PMID: 10863099
  217. Complete genome sequence of the model actinomycete Streptomyces coelicolor A3(2).
    Nature. 2002 May 9;417(6885):141-7 PMID: 12000953
  218. Evolution of sensory complexity recorded in a myxobacterial genome.
    Proc Natl Acad Sci U S A. 2006 Oct 10;103(41):15200-5 PMID: 17015832
  219. Synthesis at the molecular frontier.
    Nature. 2009 Jul 9;460(7252):197-201 PMID: 19587760
  220. Pentalenolactone biosynthesis. Molecular cloning and assignment of biochemical function to PtlH, a non-heme iron dioxygenase of Streptomyces avermitilis.
    J Am Chem Soc. 2006 May 24;128(20):6566-7 PMID: 16704250
  221. An aflatoxin biosynthesis cluster gene encodes a novel oxidase required for conversion of versicolorin a to sterigmatocystin.
    Appl Environ Microbiol. 2005 Dec;71(12):8963-5 PMID: 16332900
  222. Cloning of modular type I polyketide synthase genes from salinomycin producing strain of Streptomyces albus.
    Bioorg Med Chem. 2003 Aug 5;11(16):3401-5 PMID: 12878134
  223. Taxol biosynthesis: taxane 13 alpha-hydroxylase is a cytochrome P450-dependent monooxygenase.
    Proc Natl Acad Sci U S A. 2001 Nov 20;98(24):13595-600 PMID: 11707604
  224. Insights into polyether biosynthesis from analysis of the nigericin biosynthetic gene cluster in Streptomyces sp. DSM4137.
    Chem Biol. 2007 Jun;14(6):703-14 PMID: 17584617
  225. Enzymatic total synthesis of enterocin polyketides.
    Nat Chem Biol. 2007 Sep;3(9):557-8 PMID: 17704772
  226. Biosynthesis of complex polyketides in a metabolically engineered strain of E. coli.
    Science. 2001 Mar 2;291(5509):1790-2 PMID: 11230695
  227. Differential analysis of 2D NMR spectra: new natural products from a pilot-scale fungal extract library.
    Angew Chem Int Ed Engl. 2007;46(6):901-4 PMID: 17183517
  228. Cloning, sequencing, and biochemical characterization of the nostocyclopeptide biosynthetic gene cluster: molecular basis for imine macrocyclization.
    Gene. 2004 Jan 21;325:35-42 PMID: 14697508
  229. Engineering of complex polyketide biosynthesis--insights from sequencing of the monensin biosynthetic gene cluster.
    J Ind Microbiol Biotechnol. 2001 Dec;27(6):360-7 PMID: 11774001
  230. Flavoenzymes: diverse catalysts with recurrent features.
    Trends Biochem Sci. 2000 Mar;25(3):126-32 PMID: 10694883
  231. Combining sugar biosynthesis genes for the generation of L- and D-amicetose and formation of two novel antitumor tetracenomycins.
    Chem Commun (Camb). 2005 Mar 28;(12):1604-6 PMID: 15770274
  232. 2-Deoxystreptamine: central scaffold of aminoglycoside antibiotics.
    Chem Rev. 2005 Mar;105(3):775-91 PMID: 15755076
  233. Strategies for discovering drugs from previously unexplored natural products.
    Drug Discov Today. 2000 Jul;5(7):294-300 PMID: 10856912
  234. Antibiotics for emerging pathogens.
    Science. 2009 Aug 28;325(5944):1089-93 PMID: 19713519
  235. Metamorphic enzyme assembly in polyketide diversification.
    Nature. 2009 Jun 4;459(7247):731-5 PMID: 19494914
  236. The neocarzinostatin biosynthetic gene cluster from Streptomyces carzinostaticus ATCC 15944 involving two iterative type I polyketide synthases.
    Chem Biol. 2005 Mar;12(3):293-302 PMID: 15797213
  237. Enzymatic assembly of epothilones: the EpoC subunit and reconstitution of the EpoA-ACP/B/C polyketide and nonribosomal peptide interfaces.
    Biochemistry. 2002 Apr 30;41(17):5685-94 PMID: 11969430
  238. Structure of a cephalosporin synthase.
    Nature. 1998 Aug 20;394(6695):805-9 PMID: 9723623
  239. Equisetin biosynthesis in Fusarium heterosporum.
    Chem Commun (Camb). 2005 Jan 14;(2):186-8 PMID: 15724180
  240. Ribosomally synthesized thiopeptide antibiotics targeting elongation factor Tu.
    J Am Chem Soc. 2009 Apr 29;131(16):5946-55 PMID: 19338336
  241. Crystal structures of epothilone D-bound, epothilone B-bound, and substrate-free forms of cytochrome P450epoK.
    J Biol Chem. 2003 Nov 7;278(45):44886-93 PMID: 12933799
  242. Genetic analysis of the balhimycin (vancomycin-type) oxygenase genes.
    J Biotechnol. 2006 Aug 5;124(4):640-53 PMID: 16730832
  243. New reactions in clavulanic acid biosynthesis.
    Curr Opin Chem Biol. 2002 Oct;6(5):583-9 PMID: 12413541
  244. Rhizobium symbiosis: nod factors in perspective.
    Plant Cell. 1996 Oct;8(10):1885-98 PMID: 8914326
  245. Opportunities in metabolic engineering to facilitate scalable alkaloid production.
    Nat Chem Biol. 2009 May;5(5):292-300 PMID: 19377455
  246. A polyketide synthase-peptide synthetase gene cluster from an uncultured bacterial symbiont of Paederus beetles.
    Proc Natl Acad Sci U S A. 2002 Oct 29;99(22):14002-7 PMID: 12381784
  247. Genomic islands link secondary metabolism to functional adaptation in marine Actinobacteria.
    ISME J. 2009 Oct;3(10):1193-203 PMID: 19474814
  248. Elucidation of the kijanimicin gene cluster: insights into the biosynthesis of spirotetronate antibiotics and nitrosugars.
    J Am Chem Soc. 2007 Nov 28;129(47):14670-83 PMID: 17985890
  249. Intermodular communication in modular polyketide synthases: structural and mutational analysis of linker mediated protein-protein recognition.
    J Am Chem Soc. 2003 Apr 9;125(14):4097-102 PMID: 12670230
  250. The structural basis for docking in modular polyketide biosynthesis.
    Chembiochem. 2006 Mar;7(3):485-94 PMID: 16470766
  251. Modular Peptide Synthetases Involved in Nonribosomal Peptide Synthesis.
    Chem Rev. 1997 Nov 10;97(7):2651-2674 PMID: 11851476
  252. Biosynthesis of rubradirin as an ansamycin antibiotic from Streptomyces achromogenes var. rubradiris NRRL3061.
    Arch Microbiol. 2008 May;189(5):463-73 PMID: 18080113
  253. Three monophyletic superfamilies account for the majority of the known glycosyltransferases.
    Protein Sci. 2003 Jul;12(7):1418-31 PMID: 12824488
  254. Salinosporamide A: a highly cytotoxic proteasome inhibitor from a novel microbial source, a marine bacterium of the new genus salinospora.
    Angew Chem Int Ed Engl. 2003 Jan 20;42(3):355-7 PMID: 12548698
  255. Enzymatic tools for engineering natural product glycosylation.
    Curr Opin Chem Biol. 2006 Jun;10(3):263-71 PMID: 16675288
  256. Cloning and heterologous expression of the epothilone gene cluster.
    Science. 2000 Jan 28;287(5453):640-2 PMID: 10649995
  257. Dysregulation of the TSC-mTOR pathway in human disease.
    Nat Genet. 2005 Jan;37(1):19-24 PMID: 15624019
  258. Lyngbyatoxin biosynthesis: sequence of biosynthetic gene cluster and identification of a novel aromatic prenyltransferase.
    J Am Chem Soc. 2004 Sep 22;126(37):11432-3 PMID: 15366877
  259. Harnessing the potential of communication-mediating domains for the biocombinatorial synthesis of nonribosomal peptides.
    Proc Natl Acad Sci U S A. 2006 Jan 10;103(2):275-80 PMID: 16407157
  260. Enzymatic catalysis of the Diels-Alder reaction in the biosynthesis of natural products.
    Nat Prod Rep. 2004 Jun;21(3):321-52 PMID: 15162222
  261. Biosynthesis of polyketide synthase extender units.
    Nat Prod Rep. 2009 Jan;26(1):90-114 PMID: 19374124
  262. Crystal structures of ligand complexes of P450eryF exhibiting homotropic cooperativity.
    Proc Natl Acad Sci U S A. 2000 Mar 28;97(7):3050-5 PMID: 10716705
  263. Total biosynthesis of antitumor nonribosomal peptides in Escherichia coli.
    Nat Chem Biol. 2006 Aug;2(8):423-8 PMID: 16799553
  264. The biosynthesis of spinosyn in Saccharopolyspora spinosa: synthesis of the cross-bridging precursor and identification of the function of SpnJ.
    J Am Chem Soc. 2007 Nov 28;129(47):14582-4 PMID: 17985910
  265. Analysis of the prodiginine biosynthesis gene cluster of Streptomyces coelicolor A3(2): new mechanisms for chain initiation and termination in modular multienzymes.
    Chem Biol. 2001 Aug;8(8):817-29 PMID: 11514230
  266. Biosynthesis of the enediyne antitumor antibiotic C-1027.
    Science. 2002 Aug 16;297(5584):1170-3 PMID: 12183628
  267. Mechanistic studies on norcoclaurine synthase of benzylisoquinoline alkaloid biosynthesis: an enzymatic Pictet-Spengler reaction.
    Biochemistry. 2007 Sep 4;46(35):10153-61 PMID: 17696451
  268. Dioxygen activation at mononuclear nonheme iron active sites: enzymes, models, and intermediates.
    Chem Rev. 2004 Feb;104(2):939-86 PMID: 14871146
  269. Biosynthesis of aminocyclitol-aminoglycoside antibiotics and related compounds.
    Nat Prod Rep. 2007 Apr;24(2):358-92 PMID: 17390001
  270. A predictably selective aliphatic C-H oxidation reaction for complex molecule synthesis.
    Science. 2007 Nov 2;318(5851):783-7 PMID: 17975062
  271. A widely distributed bacterial pathway for siderophore biosynthesis independent of nonribosomal peptide synthetases.
    Chembiochem. 2005 Apr;6(4):601-11 PMID: 15719346
  272. Characterization of the maduropeptin biosynthetic gene cluster from Actinomadura madurae ATCC 39144 supporting a unifying paradigm for enediyne biosynthesis.
    J Am Chem Soc. 2007 Oct 31;129(43):13082-94 PMID: 17918933
  273. Selective interaction between nonribosomal peptide synthetases is facilitated by short communication-mediating domains.
    Proc Natl Acad Sci U S A. 2004 Nov 2;101(44):15585-90 PMID: 15498872
  274. Characterization of the biosynthetic gene cluster for the oligosaccharide antibiotic, Evernimicin, in Micromonospora carbonacea var. africana ATCC39149.
    J Ind Microbiol Biotechnol. 2001 Dec;27(6):386-92 PMID: 11774004
  275. Complete genome sequence of the myxobacterium Sorangium cellulosum.
    Nat Biotechnol. 2007 Nov;25(11):1281-9 PMID: 17965706
  276. Tailoring of glycopeptide scaffolds by the acyltransferases from the teicoplanin and A-40,926 biosynthetic operons.
    Chem Biol. 2005 Jan;12(1):131-40 PMID: 15664522
  277. 'Sweetening' natural products via glycorandomization.
    Curr Opin Biotechnol. 2005 Dec;16(6):622-30 PMID: 16226456
  278. Bacterial protection of beetle-fungus mutualism.
    Science. 2008 Oct 3;322(5898):63 PMID: 18832638
  279. Regulation of secondary metabolism in filamentous fungi.
    Annu Rev Phytopathol. 2005;43:437-58 PMID: 16078891
  280. The biosynthetic gene cluster for the polyketide immunosuppressant rapamycin.
    Proc Natl Acad Sci U S A. 1995 Aug 15;92(17):7839-43 PMID: 7644502
  281. Rationally designed glycosylated premithramycins: hybrid aromatic polyketides using genes from three different biosynthetic pathways.
    J Am Chem Soc. 2002 May 29;124(21):6056-62 PMID: 12022840
  282. Cascade reactions during coronafacic acid biosynthesis: elongation, cyclization, and functionalization during Cfa7-catalyzed condensation.
    J Am Chem Soc. 2009 Feb 18;131(6):2113-5 PMID: 19199623
  283. Highly sensitive target-based whole-cell antibacterial discovery strategy by antisense RNA silencing.
    Curr Opin Drug Discov Devel. 2007 Mar;10(2):160-6 PMID: 17436551
  284. Production of the antimalarial drug precursor artemisinic acid in engineered yeast.
    Nature. 2006 Apr 13;440(7086):940-3 PMID: 16612385
  285. Biosynthesis of chloro-beta-hydroxytyrosine, a nonproteinogenic amino acid of the peptidic backbone of glycopeptide antibiotics.
    J Bacteriol. 2004 Sep;186(18):6093-100 PMID: 15342578
  286. Identification of a Baeyer-Villiger monooxygenase sequence motif.
    FEBS Lett. 2002 May 8;518(1-3):43-7 PMID: 11997015
  287. Evidence for the role of the monB genes in polyether ring formation during monensin biosynthesis.
    Chem Biol. 2006 Apr;13(4):453-60 PMID: 16632258
  288. Polyisoprenoids: structure, biosynthesis and function.
    Prog Lipid Res. 2005 Jul;44(4):235-58 PMID: 16019076
  289. Structure and biosynthesis of heat-stable antifungal factor (HSAF), a broad-spectrum antimycotic with a novel mode of action.
    Antimicrob Agents Chemother. 2007 Jan;51(1):64-72 PMID: 17074795
  290. Total synthesis of thiostrepton. Retrosynthetic analysis and construction of key building blocks.
    J Am Chem Soc. 2005 Aug 10;127(31):11159-75 PMID: 16076224
  291. Metabolites from symbiotic bacteria.
    Nat Prod Rep. 2009 Mar;26(3):338-62 PMID: 19240945
  292. Oxidase domains in epothilone and bleomycin biosynthesis: thiazoline to thiazole oxidation during chain elongation.
    Biochemistry. 2003 Aug 19;42(32):9722-30 PMID: 12911314
  293. Cryptic chlorination by a non-haem iron enzyme during cyclopropyl amino acid biosynthesis.
    Nature. 2005 Aug 25;436(7054):1191-4 PMID: 16121186
  294. Bacterially speaking.
    Cell. 2006 Apr 21;125(2):237-46 PMID: 16630813
  295. Formation of novel secondary metabolites by bacterial multimodular assembly lines: deviations from textbook biosynthetic logic.
    Curr Opin Chem Biol. 2005 Oct;9(5):447-58 PMID: 16107321
  296. Metabolomics reviewed: a new "omics" platform technology for systems biology and implications for natural products research.
    J Nat Prod. 2005 Dec;68(12):1813-20 PMID: 16378385
  297. EncM, a versatile enterocin biosynthetic enzyme involved in Favorskii oxidative rearrangement, aldol condensation, and heterocycle-forming reactions.
    Proc Natl Acad Sci U S A. 2004 Nov 2;101(44):15609-14 PMID: 15505225
  298. Biosynthesis of the sesquiterpene antibiotic albaflavenone in Streptomyces coelicolor A3(2).
    J Biol Chem. 2008 Mar 28;283(13):8183-9 PMID: 18234666
  299. Features and applications of bacterial glycosyltransferases: current state and prospects.
    Appl Microbiol Biotechnol. 2008 Oct;80(6):945-52 PMID: 18777021
  300. The Connectivity Map: using gene-expression signatures to connect small molecules, genes, and disease.
    Science. 2006 Sep 29;313(5795):1929-35 PMID: 17008526
  301. Nonenzymatic oxidative steps accompanying action of the cytochrome P450 enzymes StaP and RebP in the biosynthesis of staurosporine and rebeccamycin.
    J Am Chem Soc. 2007 Sep 12;129(36):11016-7 PMID: 17705392
  302. Taxol: biosynthesis, molecular genetics, and biotechnological applications.
    Appl Microbiol Biotechnol. 2001 Oct;57(1-2):13-9 PMID: 11693909
Article Info
Journal
Journal of the American Chemical Society
Abbr.
J Am Chem Soc
ISSN
1520-5126
Published
2010-03-03
Pages
2469-93
Language
English
Region
United States
NLM ID
7503056
PMCID
PMC2828520
Subset
IM
Grants
NIGMS NIH HHS · F32 GM020011 · United States
NIGMS NIH HHS · R01 GM049338 · United States
NIGMS NIH HHS · GM49338 · United States
NIAID NIH HHS · U54 AI057159 · United States
NIAID NIH HHS · U54 AI057159-03 · United States
NIGMS NIH HHS · R01 GM049338-17 · United States
NIAID NIH HHS · AI42738 · United States
NIAID NIH HHS · R01 AI042738 · United States
NIAID NIH HHS · AI057159 · United States
NIGMS NIH HHS · R01 GM020011-39 · United States
NIGMS NIH HHS · GM20011 · United States
NIGMS NIH HHS · R01 GM049338-16 · United States
NIAID NIH HHS · R01 AI042738-12 · United States
NIGMS NIH HHS · R01 GM020011 · United States
Analysis Services
Analysis Services

Contact

No. 2 Wenbo Road, Zhangqiu District, Jinan, Shandong

Qilu Normal University · Genelibs Bioinformatics Lab

750 Shunhua Rd, Jinan

2F, Bldg F, University Science Park

Tel: 0531-88819269

WeChat Official Account

Follow our WeChat subscription account for real-time updates and the latest in medical and biological research.


Business Email

E-mail: product@genelibs.com