-
Forced periodic expression of G1 cyclins phase-locks the budding yeast cell cycle.
Proc Natl Acad Sci U S A. 2009 Apr 21;106(16):6632-7
PMID: 19346485
-
Stochasticity in transcriptional regulation: origins, consequences, and mathematical representations.
Biophys J. 2001 Dec;81(6):3116-36
PMID: 11720979
-
The role of predictive modelling in rationally re-engineering biological systems.
Nat Rev Microbiol. 2009 Apr;7(4):297-305
PMID: 19252506
-
Modeling and simulation of genetic regulatory systems: a literature review.
J Comput Biol. 2002;9(1):67-103
PMID: 11911796
-
Differentiation-on-a-chip: a microfluidic platform for long-term cell culture studies.
Lab Chip. 2005 Jan;5(1):14-9
PMID: 15616734
-
Dynamic gene expression profiling using a microfabricated living cell array.
Anal Chem. 2004 Jul 15;76(14):4098-103
PMID: 15253648
-
Metabolic control theory: a structural approach.
J Theor Biol. 1988 Nov 21;135(2):175-201
PMID: 3267767
-
Microfluidic device for single-cell analysis.
Anal Chem. 2003 Jul 15;75(14):3581-6
PMID: 14570213
-
Monitoring dynamics of single-cell gene expression over multiple cell cycles.
Mol Syst Biol. 2005;1:2005.0024
PMID: 16729059
-
Components for integrated poly(dimethylsiloxane) microfluidic systems.
Electrophoresis. 2002 Oct;23(20):3461-73
PMID: 12412113
-
A sensitive, versatile microfluidic assay for bacterial chemotaxis.
Proc Natl Acad Sci U S A. 2003 Apr 29;100(9):5449-54
PMID: 12704234
-
Microfluidic single-cell analysis of intracellular compounds.
J R Soc Interface. 2008 Oct 6;5 Suppl 2:S139-50
PMID: 18682362
-
A microfluidic chemostat for experiments with bacterial and yeast cells.
Nat Methods. 2005 Sep;2(9):685-9
PMID: 16118639
-
Microfluidic perfusion system for automated delivery of temporal gradients to islets of Langerhans.
Anal Chem. 2009 Feb 1;81(3):1162-8
PMID: 19178342
-
Extraction, purification and properties of aequorin, a bioluminescent protein from the luminous hydromedusan, Aequorea.
J Cell Comp Physiol. 1962 Jun;59:223-39
PMID: 13911999
-
Dynamic analysis of MAPK signaling using a high-throughput microfluidic single-cell imaging platform.
Proc Natl Acad Sci U S A. 2009 Mar 10;106(10):3758-63
PMID: 19223588
-
Metabolic gene regulation in a dynamically changing environment.
Nature. 2008 Aug 28;454(7208):1119-22
PMID: 18668041
-
Regulation of cell signaling dynamics by the protein kinase-scaffold Ste5.
Mol Cell. 2008 Jun 6;30(5):649-56
PMID: 18538663
-
A synthetic gene network for tuning protein degradation in Saccharomyces cerevisiae.
Mol Syst Biol. 2007;3:127
PMID: 17667949
-
Microfluidic shear devices for quantitative analysis of cell adhesion.
Anal Chem. 2004 Sep 15;76(18):5257-64
PMID: 15362881
-
Bacterial persistence as a phenotypic switch.
Science. 2004 Sep 10;305(5690):1622-5
PMID: 15308767
-
Microfabrication meets microbiology.
Nat Rev Microbiol. 2007 Mar;5(3):209-18
PMID: 17304250
-
Pumpless, selective docking of yeast cells inside a microfluidic channel induced by receding meniscus.
Lab Chip. 2006 Aug;6(8):988-94
PMID: 16874367
-
Dynamic cell culture: a microfluidic function generator for live cell microscopy.
Lab Chip. 2009 Jan 7;9(1):164-6
PMID: 19209350
-
The logical analysis of continuous, non-linear biochemical control networks.
J Theor Biol. 1973 Apr;39(1):103-29
PMID: 4741704
-
A chemical waveform synthesizer.
Proc Natl Acad Sci U S A. 2005 Jun 7;102(23):8097-102
PMID: 15928088
-
Models of genetic control by repression with time delays and spatial effects.
J Math Biol. 1984;20(1):39-57
PMID: 6491544
-
A guide to choosing fluorescent proteins.
Nat Methods. 2005 Dec;2(12):905-9
PMID: 16299475
-
Integration of biological networks and gene expression data using Cytoscape.
Nat Protoc. 2007;2(10):2366-82
PMID: 17947979
-
A microfabricated fluorescence-activated cell sorter.
Nat Biotechnol. 1999 Nov;17(11):1109-11
PMID: 10545919
-
Single-molecule DNA amplification and analysis in an integrated microfluidic device.
Anal Chem. 2001 Feb 1;73(3):565-70
PMID: 11217764
-
A three-dimensional flow control concept for single-cell experiments on a microchip. 1. Cell selection, cell retention, cell culture, cell balancing, and cell scanning.
Anal Chem. 2004 Sep 15;76(18):5273-81
PMID: 15362883
-
Quorum sensing in bacteria.
Annu Rev Microbiol. 2001;55:165-99
PMID: 11544353
-
Single-cell protein induction dynamics reveals a period of vulnerability to antibiotics in persister bacteria.
Proc Natl Acad Sci U S A. 2008 Apr 22;105(16):6145-9
PMID: 18427112
-
A three-channel microfluidic device for generating static linear gradients and its application to the quantitative analysis of bacterial chemotaxis.
Lab Chip. 2006 Mar;6(3):381-8
PMID: 16511621
-
Tightly regulated and heritable division control in single bacterial cells.
Biophys J. 2008 Aug;95(4):2063-72
PMID: 18469083
-
Long-term monitoring of bacteria undergoing programmed population control in a microchemostat.
Science. 2005 Jul 1;309(5731):137-40
PMID: 15994559
-
Cell research with physically modified microfluidic channels: a review.
Lab Chip. 2008 Jul;8(7):1015-23
PMID: 18584072
-
Neutrophil chemotaxis in linear and complex gradients of interleukin-8 formed in a microfabricated device.
Nat Biotechnol. 2002 Aug;20(8):826-30
PMID: 12091913
-
Understanding, improving and using green fluorescent proteins.
Trends Biochem Sci. 1995 Nov;20(11):448-55
PMID: 8578587
-
A synthetic oscillatory network of transcriptional regulators.
Nature. 2000 Jan 20;403(6767):335-8
PMID: 10659856
-
Fabrication of microfluidic systems in poly(dimethylsiloxane).
Electrophoresis. 2000 Jan;21(1):27-40
PMID: 10634468
-
A microfluidic device with a linear temperature gradient for parallel and combinatorial measurements.
J Am Chem Soc. 2002 Apr 24;124(16):4432-5
PMID: 11960472
-
Delay-induced degrade-and-fire oscillations in small genetic circuits.
Phys Rev Lett. 2009 Feb 13;102(6):068105
PMID: 19257639
-
A general method for patterning gradients of biomolecules on surfaces using microfluidic networks.
Anal Chem. 2005 Apr 15;77(8):2338-47
PMID: 15828766
-
Circuit simulation of genetic networks.
Science. 1995 Aug 4;269(5224):650-6
PMID: 7624793
-
Integrated nanoliter systems.
Nat Biotechnol. 2003 Oct;21(10):1179-83
PMID: 14520403
-
A microfluidic bioreactor based on hydrogel-entrapped E. coli: cell viability, lysis, and intracellular enzyme reactions.
Anal Chem. 2003 Jan 1;75(1):22-6
PMID: 12530814
-
Microfluidic flow-encoded switching for parallel control of dynamic cellular microenvironments.
Lab Chip. 2008 Jan;8(1):107-16
PMID: 18094768
-
Generation of dynamic temporal and spatial concentration gradients using microfluidic devices.
Lab Chip. 2004 Jun;4(3):164-7
PMID: 15159771
-
A high-throughput microfluidic real-time gene expression living cell array.
Lab Chip. 2007 Jan;7(1):77-85
PMID: 17180208
-
T cell chemotaxis in a simple microfluidic device.
Lab Chip. 2006 Nov;6(11):1462-9
PMID: 17066171
-
Soft lithography in biology and biochemistry.
Annu Rev Biomed Eng. 2001;3:335-73
PMID: 11447067
-
Fluctuations and slow variables in genetic networks.
Biophys J. 2003 Mar;84(3):1606-15
PMID: 12609864
-
Microfluidic devices fabricated in poly(dimethylsiloxane) for biological studies.
Electrophoresis. 2003 Nov;24(21):3563-76
PMID: 14613181
-
Microfluidic system for measuring neutrophil migratory responses to fast switches of chemical gradients.
Lab Chip. 2006 Feb;6(2):191-8
PMID: 16450027
-
Engineered gene circuits.
Nature. 2002 Nov 14;420(6912):224-30
PMID: 12432407
-
A microfluidic device for temporally controlled gene expression and long-term fluorescent imaging in unperturbed dividing yeast cells.
PLoS One. 2008 Jan 23;3(1):e1468
PMID: 18213377
-
Fabrication of topologically complex three-dimensional microfluidic systems in PDMS by rapid prototyping.
Anal Chem. 2000 Jul 15;72(14):3158-64
PMID: 10939381
-
Creating new fluorescent probes for cell biology.
Nat Rev Mol Cell Biol. 2002 Dec;3(12):906-18
PMID: 12461557
-
A genomic integration method to visualize localization of endogenous mRNAs in living yeast.
Nat Methods. 2007 May;4(5):409-12
PMID: 17417645
-
Microfluidics-based systems biology.
Mol Biosyst. 2006 Feb;2(2):97-112
PMID: 16880927
-
Reverse engineering intracellular biochemical networks.
Nat Chem Biol. 2008 Nov;4(11):643-7
PMID: 18936743
-
Time lag in a model of a biochemical reaction sequence with end product inhibition.
J Theor Biol. 1977 Aug 7;67(3):549-56
PMID: 904329
-
The chemistrode: a droplet-based microfluidic device for stimulation and recording with high temporal, spatial, and chemical resolution.
Proc Natl Acad Sci U S A. 2008 Nov 4;105(44):16843-8
PMID: 18974218
-
Transport, manipulation, and reaction of biological cells on-chip using electrokinetic effects.
Anal Chem. 1997 Apr 15;69(8):1564-8
PMID: 9109354
-
Sickle cell vasoocclusion and rescue in a microfluidic device.
Proc Natl Acad Sci U S A. 2007 Dec 18;104(51):20496-500
PMID: 18077341
-
High-efficiency, two-dimensional separations of protein digests on microfluidic devices.
Anal Chem. 2003 Aug 1;75(15):3758-64
PMID: 14572041
-
Metabolic modelling of microbes: the flux-balance approach.
Environ Microbiol. 2002 Mar;4(3):133-40
PMID: 12000313
-
Gene network shaping of inherent noise spectra.
Nature. 2006 Feb 2;439(7076):608-11
PMID: 16452980
-
A variant of yellow fluorescent protein with fast and efficient maturation for cell-biological applications.
Nat Biotechnol. 2002 Jan;20(1):87-90
PMID: 11753368
-
Stochastic protein expression in individual cells at the single molecule level.
Nature. 2006 Mar 16;440(7082):358-62
PMID: 16541077
-
Microchemostat-microbial continuous culture in a polymer-based, instrumented microbioreactor.
Lab Chip. 2006 Jul;6(7):906-13
PMID: 16804595
-
Defined spatial structure stabilizes a synthetic multispecies bacterial community.
Proc Natl Acad Sci U S A. 2008 Nov 25;105(47):18188-93
PMID: 19011107
-
Systems biology: Reverse engineering the cell.
Nature. 2008 Aug 28;454(7208):1059-62
PMID: 18756243
-
Integrated system for rapid PCR-based DNA analysis in microfluidic devices.
Anal Chem. 2000 Jul 1;72(13):2995-3000
PMID: 10905340
-
Splitting or stacking fluorescent proteins to visualize mRNA in living cells.
Nat Methods. 2007 May;4(5):391-2
PMID: 17464293
-
Micro/Nanofluidic device for single-cell-based assay.
Biomed Microdevices. 2005 Mar;7(1):35-40
PMID: 15834518
-
Computation of mutual fitness by competing bacteria.
Proc Natl Acad Sci U S A. 2008 Dec 23;105(51):20269-73
PMID: 19074280
-
New unstable variants of green fluorescent protein for studies of transient gene expression in bacteria.
Appl Environ Microbiol. 1998 Jun;64(6):2240-6
PMID: 9603842
-
Signal processing by the HOG MAP kinase pathway.
Proc Natl Acad Sci U S A. 2008 May 20;105(20):7165-70
PMID: 18480263
-
Frequency-modulated nuclear localization bursts coordinate gene regulation.
Nature. 2008 Sep 25;455(7212):485-90
PMID: 18818649
-
Frequency domain analysis of noise in autoregulated gene circuits.
Proc Natl Acad Sci U S A. 2003 Apr 15;100(8):4551-6
PMID: 12671069
-
Fine temporal control of the medium gas content and acidity and on-chip generation of series of oxygen concentrations for cell cultures.
Lab Chip. 2009 Apr 21;9(8):1073-84
PMID: 19350089
-
Biomechanical ordering of dense cell populations.
Proc Natl Acad Sci U S A. 2008 Oct 7;105(40):15346-51
PMID: 18832176
-
Microfluidics device for single cell gene expression analysis in Saccharomyces cerevisiae.
Yeast. 2006 Oct-Nov;23(14-15):1065-73
PMID: 17083143
-
Human neural stem cell growth and differentiation in a gradient-generating microfluidic device.
Lab Chip. 2005 Apr;5(4):401-6
PMID: 15791337
-
Microfluidic single-cell mRNA isolation and analysis.
Anal Chem. 2006 May 1;78(9):3084-9
PMID: 16642997
-
Single-cell enzyme concentrations, kinetics, and inhibition analysis using high-density hydrodynamic cell isolation arrays.
Anal Chem. 2006 Jul 15;78(14):4925-30
PMID: 16841912
-
Stochastic gene expression in a single cell.
Science. 2002 Aug 16;297(5584):1183-6
PMID: 12183631
-
Universal microfluidic gradient generator.
Anal Chem. 2006 May 15;78(10):3472-7
PMID: 16689552
-
A fast, robust and tunable synthetic gene oscillator.
Nature. 2008 Nov 27;456(7221):516-9
PMID: 18971928
-
Construction of a genetic toggle switch in Escherichia coli.
Nature. 2000 Jan 20;403(6767):339-42
PMID: 10659857
-
NanoLiterBioReactor: long-term mammalian cell culture at nanofabricated scale.
Biomed Microdevices. 2004 Dec;6(4):325-39
PMID: 15548879
-
A systems approach to measuring the binding energy landscapes of transcription factors.
Science. 2007 Jan 12;315(5809):233-7
PMID: 17218526
-
Transient dynamics of genetic regulatory networks.
Biophys J. 2007 May 15;92(10):3501-12
PMID: 17350994
-
Delay-induced stochastic oscillations in gene regulation.
Proc Natl Acad Sci U S A. 2005 Oct 11;102(41):14593-8
PMID: 16199522
-
Dynamics of Drosophila embryonic patterning network perturbed in space and time using microfluidics.
Nature. 2005 Apr 28;434(7037):1134-8
PMID: 15858575
-
Self-organization in high-density bacterial colonies: efficient crowd control.
PLoS Biol. 2007 Oct 30;5(11):e302
PMID: 18044986
-
Real-time kinetics of gene activity in individual bacteria.
Cell. 2005 Dec 16;123(6):1025-36
PMID: 16360033
-
Life-on-a-chip.
Nat Rev Microbiol. 2003 Nov;1(2):158-64
PMID: 15035045
-
Dropspots: a picoliter array in a microfluidic device.
Lab Chip. 2009 Jan 7;9(1):44-9
PMID: 19209334
-
Origins of extrinsic variability in eukaryotic gene expression.
Nature. 2006 Feb 16;439(7078):861-4
PMID: 16372021
-
RNA visualization in live bacterial cells using fluorescent protein complementation.
Nat Methods. 2007 May;4(5):421-7
PMID: 17401371
-
MAPK-mediated bimodal gene expression and adaptive gradient sensing in yeast.
Nature. 2007 Mar 1;446(7131):46-51
PMID: 17310144
-
Using movies to analyse gene circuit dynamics in single cells.
Nat Rev Microbiol. 2009 May;7(5):383-92
PMID: 19369953
-
Comparison of classical and autogenous systems of regulation in inducible operons.
Nature. 1974 Dec 13;252(5484):546-9
PMID: 4431516
-
Ensemble modeling of metabolic networks.
Biophys J. 2008 Dec 15;95(12):5606-17
PMID: 18820235
-
The frequency dependence of osmo-adaptation in Saccharomyces cerevisiae.
Science. 2008 Jan 25;319(5862):482-4
PMID: 18218902
-
An integrated microfabricated cell sorter.
Anal Chem. 2002 Jun 1;74(11):2451-7
PMID: 12069222
-
Arrays of horizontally-oriented mini-reservoirs generate steady microfluidic flows for continuous perfusion cell culture and gradient generation.
Analyst. 2004 Nov;129(11):1026-31
PMID: 15508030
-
Microfluidics technology for systems biology research.
Methods Mol Biol. 2009;500:203-19
PMID: 19399428
-
Amino acid sequences common to rapidly degraded proteins: the PEST hypothesis.
Science. 1986 Oct 17;234(4774):364-8
PMID: 2876518
-
Intrinsic and extrinsic contributions to stochasticity in gene expression.
Proc Natl Acad Sci U S A. 2002 Oct 1;99(20):12795-800
PMID: 12237400
-
Microfluidic large-scale integration.
Science. 2002 Oct 18;298(5593):580-4
PMID: 12351675
-
Microfluidic devices for the high-throughput chemical analysis of cells.
Anal Chem. 2003 Nov 1;75(21):5646-55
PMID: 14588001
-
Designer gene networks: Towards fundamental cellular control.
Chaos. 2001 Mar;11(1):207-220
PMID: 12779454
-
Using three-dimensional microfluidic networks for solving computationally hard problems.
Proc Natl Acad Sci U S A. 2001 Mar 13;98(6):2961-6
PMID: 11248014
-
Bacterial metapopulations in nanofabricated landscapes.
Proc Natl Acad Sci U S A. 2006 Nov 14;103(46):17290-5
PMID: 17090676