Home LiteratureArticle Details
PMID: 19074280 Published · ppublish English Journal Article Research Support, N.I.H., Extramural Research Support, Non-U.S. Gov't Research Support, U.S. Gov't, Non-P.H.S.

Computation of mutual fitness by competing bacteria.

Keymer JE, Galajda P, Lambert G, Liao D, Austin RH

Abstract

Competing populations in shared spaces with nonrenewable resources do not necessarily wage a battle for dominance at the cost of extinction of the less-fit strain if there are fitness advantages to the presence of the other strain. We report on the use of nanofabricated habitat landscapes to study the population dynamics of competing wild type and a growth advantage in stationary phase (GASP) mutant strains of Escherichia coli in a sealed and heterogeneous nutrient environment. Although GASP mutants are competitors with wild-type bacteria, we find that the 2 strains cooperate to maximize fitness (long-term total productivity) via spatial segregation: despite their very close genomic kinship, wild-type populations associate with wild-type populations and GASP populations with GASP populations. Thus, wild-type and GASP strains avoid each other locally, yet fitness is enhanced for both strains globally. This computation of fitness enhancement emerges from the local interaction among cells but maximizes global densities. At present we do not understand how fluctuations in both spatial and temporal dimensions lead to the emergent computation and how multilevel aggregates produce this collective adaptation.

MeSH Terms
Adaptation, Physiological Cell Communication Ecosystem Escherichia coli/physiology Population Dynamics Species Specificity
Authors & Affiliations
5 authors, click to expand affiliations / ORCID
Keymer Juan E
Kavli Institute of Nanoscience, Delft University of Technology, 2628 CJ Delft, The Netherlands. j.e.keymervergara@tudelft.nl
Galajda Peter
Lambert Guillaume
Liao David
Austin Robert H
References (21)
21 references, click to expand
  1. Robustness in simple biochemical networks.
    Nature. 1997 Jun 26;387(6636):913-7 PMID: 9202124
  2. Evolution of microbial diversity during prolonged starvation.
    Proc Natl Acad Sci U S A. 1999 Mar 30;96(7):4023-7 PMID: 10097156
  3. Small talk. Cell-to-cell communication in bacteria.
    Cell. 2002 May 17;109(4):421-4 PMID: 12086599
  4. Recent insights into the general stress response regulatory network in Escherichia coli.
    J Mol Microbiol Biotechnol. 2002 May;4(3):341-6 PMID: 11931567
  5. The evolution of emergent computation.
    Proc Natl Acad Sci U S A. 1995 Nov 7;92(23):10742-6 PMID: 11607588
  6. Stomatal patchiness and task-performing networks.
    Ann Bot. 2007 Feb;99(2):219-26 PMID: 17085471
  7. Evidence for complex, collective dynamics and emergent, distributed computation in plants.
    Proc Natl Acad Sci U S A. 2004 Jan 27;101(4):918-22 PMID: 14732685
  8. Heterogeneity of the principal sigma factor in Escherichia coli: the rpoS gene product, sigma 38, is a second principal sigma factor of RNA polymerase in stationary-phase Escherichia coli.
    Proc Natl Acad Sci U S A. 1993 Apr 15;90(8):3511-5 PMID: 8475100
  9. A physicist looks at bacterial chemotaxis.
    Cold Spring Harb Symp Quant Biol. 1988;53 Pt 1:1-9 PMID: 3076074
  10. Evolutionary cheating in Escherichia coli stationary phase cultures.
    Genetics. 2001 Jun;158(2):519-26 PMID: 11404318
  11. Microbial competition: Escherichia coli mutants that take over stationary phase cultures.
    Science. 1993 Mar 19;259(5102):1757-60 PMID: 7681219
  12. Social evolution theory for microorganisms.
    Nat Rev Microbiol. 2006 Aug;4(8):597-607 PMID: 16845430
  13. Curli biogenesis and function.
    Annu Rev Microbiol. 2006;60:131-47 PMID: 16704339
  14. Visualization, modelling and prediction in soil microbiology.
    Nat Rev Microbiol. 2007 Sep;5(9):689-99 PMID: 17676055
  15. The tragedy of the commons. The population problem has no technical solution; it requires a fundamental extension in morality.
    Science. 1968 Dec 13;162(3859):1243-8 PMID: 5699198
  16. DNA methylation: a profile of methods and applications.
    Biotechniques. 2002 Sep;33(3):632, 634, 636-49 PMID: 12238773
  17. Mutations enhancing amino acid catabolism confer a growth advantage in stationary phase.
    J Bacteriol. 1999 Sep;181(18):5800-7 PMID: 10482523
  18. Allelopathy in Spatially Distributed Populations
    J Theor Biol. 1997 Mar 21;185(2):165-71 PMID: 9344720
  19. Functional modulation of Escherichia coli RNA polymerase.
    Annu Rev Microbiol. 2000;54:499-518 PMID: 11018136
  20. Bacterial metapopulations in nanofabricated landscapes.
    Proc Natl Acad Sci U S A. 2006 Nov 14;103(46):17290-5 PMID: 17090676
  21. Bacterial stationary-state mutagenesis and Mammalian tumorigenesis as stress-induced cellular adaptations and the role of epigenetics.
    Curr Genomics. 2006;7(8):481-96 PMID: 18369407
Article Info
Journal
Proceedings of the National Academy of Sciences of the United States of America
Abbr.
Proc Natl Acad Sci U S A
ISSN
1091-6490
Published
2008-12-23
Epub
2008-00-11
Pages
20269-73
Language
English
Region
United States
NLM ID
7505876
PMCID
PMC2600899
Subset
IM
Grants
NHGRI NIH HHS · R01 HG001506 · United States
NHGRI NIH HHS · HG01506 · United States
Analysis Services
Analysis Services

Contact

No. 2 Wenbo Road, Zhangqiu District, Jinan, Shandong

Qilu Normal University · Genelibs Bioinformatics Lab

750 Shunhua Rd, Jinan

2F, Bldg F, University Science Park

Tel: 0531-88819269

WeChat Official Account

Follow our WeChat subscription account for real-time updates and the latest in medical and biological research.


Business Email

E-mail: product@genelibs.com