-
Contribution of the mismatch DNA repair system to the generation of stationary-phase-induced mutants of Bacillus subtilis.
J Bacteriol. 2004 Oct;186(19):6485-91
PMID: 15375129
-
Bacterial small RNA regulators.
Crit Rev Biochem Mol Biol. 2005 Mar-Apr;40(2):93-113
PMID: 15814430
-
Role of histone-like protein H-NS in multidrug resistance of Escherichia coli.
J Bacteriol. 2004 Mar;186(5):1423-9
PMID: 14973023
-
When cells get stressed: an integrative view of cellular senescence.
J Clin Invest. 2004 Jan;113(1):8-13
PMID: 14702100
-
Nucleoid restructuring in stationary-state bacteria.
Mol Microbiol. 2004 Jan;51(2):395-405
PMID: 14756781
-
Mutations that activate the silent bgl operon of Escherichia coli confer a growth advantage in stationary phase.
J Bacteriol. 2005 Dec;187(23):7912-7
PMID: 16291664
-
Stimulation of transposition of the Mycobacterium tuberculosis insertion sequence IS6110 by exposure to a microaerobic environment.
Mol Microbiol. 1999 Sep;33(5):982-93
PMID: 10476032
-
The E.coli fis promoter is subject to stringent control and autoregulation.
EMBO J. 1992 Mar;11(3):1075-83
PMID: 1547773
-
Tumorigenesis: the adaptation of mammalian cells to sustained stress environment by epigenetic alterations and succeeding matched mutations.
Carcinogenesis. 2005 Aug;26(8):1323-34
PMID: 15802302
-
Effects of nutrition and growth rate on Lrp levels in Escherichia coli.
J Bacteriol. 1996 Dec;178(23):6930-6
PMID: 8955316
-
The CcrM DNA methyltransferase of Agrobacterium tumefaciens is essential, and its activity is cell cycle regulated.
J Bacteriol. 2001 May;183(10):3065-75
PMID: 11325934
-
IHF is the limiting host factor in transposition of Pseudomonas putida transposon Tn4652 in stationary phase.
Mol Microbiol. 2004 Mar;51(6):1773-85
PMID: 15009901
-
Quantitative control of the stationary phase-specific sigma factor, sigma S, in Escherichia coli: involvement of the nucleoid protein H-NS.
EMBO J. 1995 Feb 1;14(3):594-602
PMID: 7859747
-
The bacterial replication initiator DnaA. DnaA and oriC, the bacterial mode to initiate DNA replication.
FEMS Microbiol Rev. 2002 Nov;26(4):355-74
PMID: 12413665
-
Involvement of sigma(S) in starvation-induced transposition of Pseudomonas putida transposon Tn4652.
J Bacteriol. 2001 Sep;183(18):5445-8
PMID: 11514532
-
Mismatch repair is diminished during stationary-phase mutation.
Mutat Res. 1999 Jul;437(1):51-60
PMID: 10425389
-
Spreading of silent chromatin: inaction at a distance.
Nat Rev Genet. 2006 Oct;7(10):793-803
PMID: 16983375
-
Effect of endogenous carotenoids and defective RpoS sigma factor on spontaneous mutation under starvation conditions in Escherichia coli: evidence for the possible involvement of singlet oxygen.
Mutat Res. 1998 Jul 17;403(1-2):21-8
PMID: 9726002
-
DNA polymerase II as a fidelity factor in chromosomal DNA synthesis in Escherichia coli.
Mol Microbiol. 2005 Oct;58(1):61-70
PMID: 16164549
-
DNA mismatch repair: molecular mechanisms and biological function.
Annu Rev Microbiol. 2003;57:579-608
PMID: 14527292
-
Dynamics of IS-related genetic rearrangements in resting Escherichia coli K-12.
Mol Biol Evol. 1995 Mar;12(2):198-207
PMID: 7700149
-
Chromosomal replication and the cell membrane.
Curr Opin Microbiol. 2005 Apr;8(2):143-8
PMID: 15802244
-
Stress-induced DNA duplex destabilization (SIDD) in the E. coli genome: SIDD sites are closely associated with promoters.
Genome Res. 2004 Aug;14(8):1575-84
PMID: 15289476
-
Bacterial evolution through the selective loss of beneficial Genes. Trade-offs in expression involving two loci.
Genetics. 2003 Aug;164(4):1271-7
PMID: 12930738
-
Over-representation of repeats in stress response genes: a strategy to increase versatility under stressful conditions?
Nucleic Acids Res. 2002 May 1;30(9):1886-94
PMID: 11972324
-
Conditional senescence in bacteria: death of the immortals.
Mol Microbiol. 2003 Apr;48(1):17-23
PMID: 12657042
-
Growth phase-dependent variation in protein composition of the Escherichia coli nucleoid.
J Bacteriol. 1999 Oct;181(20):6361-70
PMID: 10515926
-
Environmental tuning of mutation rates.
Environ Microbiol. 2006 Feb;8(2):193-9
PMID: 16423008
-
A bacterial G protein-mediated response to replication arrest.
Mol Cell. 2005 Feb 18;17(4):549-60
PMID: 15721258
-
Adaptive point mutation and adaptive amplification pathways in the Escherichia coli Lac system: stress responses producing genetic change.
J Bacteriol. 2004 Aug;186(15):4838-43
PMID: 15262914
-
Aberrant DNA methylation as a cancer-inducing mechanism.
Annu Rev Pharmacol Toxicol. 2005;45:629-56
PMID: 15822191
-
Epigenetic regulation by histone methylation and histone variants.
Mol Endocrinol. 2005 Mar;19(3):563-73
PMID: 15677708
-
Formation of DNA methylation patterns: nonmethylated GATC sequences in gut and pap operons.
J Bacteriol. 1998 Nov;180(22):5913-20
PMID: 9811649
-
Inhibitory effects of basic or neutral phospholipid on acidic phospholipid-mediated dissociation of adenine nucleotide bound to DnaA protein, the initiator of chromosomal DNA replication.
J Biol Chem. 2003 Aug 1;278(31):28778-86
PMID: 12767975
-
Adaptive mutation and amplification in Escherichia coli: two pathways of genome adaptation under stress.
Res Microbiol. 2004 Jun;155(5):352-9
PMID: 15207867
-
Evolution of mutation rates in bacteria.
Mol Microbiol. 2006 May;60(4):820-7
PMID: 16677295
-
The Escherichia coli histone-like protein HU regulates rpoS translation.
Mol Microbiol. 2001 Feb;39(4):1069-79
PMID: 11251825
-
Effect of dam methylation on Tn5 transposition.
J Mol Biol. 1988 Jan 5;199(1):35-45
PMID: 2451025
-
N6-methyl-adenine: an epigenetic signal for DNA-protein interactions.
Nat Rev Microbiol. 2006 Mar;4(3):183-92
PMID: 16489347
-
A switch from high-fidelity to error-prone DNA double-strand break repair underlies stress-induced mutation.
Mol Cell. 2005 Sep 16;19(6):791-804
PMID: 16168374
-
Genetic evidence that Legionella pneumophila RpoS modulates expression of the transmission phenotype in both the exponential phase and the stationary phase.
Infect Immun. 2004 May;72(5):2468-76
PMID: 15102753
-
Small regulatory RNAs in mammals.
Hum Mol Genet. 2005 Apr 15;14 Spec No 1:R121-32
PMID: 15809264
-
DNA damage-induced cell death by apoptosis.
Trends Mol Med. 2006 Sep;12(9):440-50
PMID: 16899408
-
Instability of short-sequence DNA repeats of pear pathogenic Erwinia strains from Japan and Erwinia amylovora fruit tree and raspberry strains.
Mol Genet Genomics. 2003 Mar;268(6):739-49
PMID: 12655400
-
Structure of the histone-like protein H-NS and its role in regulation and genome superstructure.
Curr Opin Microbiol. 2004 Apr;7(2):109-14
PMID: 15063845
-
A DNA adenine methyltransferase of Escherichia coli that is cell cycle regulated and essential for viability.
J Bacteriol. 2004 Sep;186(18):6340
PMID: 15342609
-
Genomic changes arising in long-term stab cultures of Escherichia coli.
J Bacteriol. 2004 Oct;186(19):6437-42
PMID: 15375124
-
SOS-independent induction of dinB transcription by beta-lactam-mediated inhibition of cell wall synthesis in Escherichia coli.
J Bacteriol. 2005 Feb;187(4):1515-8
PMID: 15687217
-
The small RNA regulators of Escherichia coli: roles and mechanisms*.
Annu Rev Microbiol. 2004;58:303-28
PMID: 15487940
-
Prokaryotic toxin-antitoxin stress response loci.
Nat Rev Microbiol. 2005 May;3(5):371-82
PMID: 15864262
-
Microbial genetics. Hypermutation under stress.
Nature. 1997 Jun 5;387(6633):557-8
PMID: 9177337
-
Modulation of DNA conformations through the formation of alternative high-order HU-DNA complexes.
J Mol Biol. 2004 Aug 6;341(2):419-28
PMID: 15276833
-
Prolonged stationary-phase incubation selects for lrp mutations in Escherichia coli K-12.
J Bacteriol. 2000 Aug;182(15):4361-5
PMID: 10894750
-
Roles of DNA adenine methylation in regulating bacterial gene expression and virulence.
Infect Immun. 2001 Dec;69(12):7197-204
PMID: 11705888
-
IHF and HU: flexible architects of bent DNA.
Curr Opin Struct Biol. 2004 Feb;14(1):28-35
PMID: 15102446
-
Mechanisms of genome-wide hypermutation in stationary phase.
Ann N Y Acad Sci. 1999 May 18;870:275-89
PMID: 10415490
-
Cell cycle arrest in Era GTPase mutants: a potential growth rate-regulated checkpoint in Escherichia coli.
Mol Microbiol. 1998 Feb;27(4):739-50
PMID: 9515700
-
ppGpp: a global regulator in Escherichia coli.
Trends Microbiol. 2005 May;13(5):236-42
PMID: 15866041
-
The Lrp family of transcriptional regulators.
Mol Microbiol. 2003 Apr;48(2):287-94
PMID: 12675791
-
Involvement of error-prone DNA polymerase IV in stationary-phase mutagenesis in Pseudomonas putida.
J Bacteriol. 2004 May;186(9):2735-44
PMID: 15090515
-
Error-prone DNA polymerase IV is controlled by the stress-response sigma factor, RpoS, in Escherichia coli.
Mol Microbiol. 2003 Oct;50(2):549-61
PMID: 14617178
-
Low-force DNA condensation and discontinuous high-force decondensation reveal a loop-stabilizing function of the protein Fis.
Phys Rev Lett. 2005 Nov 11;95(20):208101
PMID: 16384101
-
Growth versus maintenance: a trade-off dictated by RNA polymerase availability and sigma factor competition?
Mol Microbiol. 2004 Nov;54(4):855-62
PMID: 15522072
-
Obg, an essential GTP binding protein of Bacillus subtilis, is necessary for stress activation of transcription factor sigma(B).
J Bacteriol. 1999 Aug;181(15):4653-60
PMID: 10419966
-
Involvement of DNA mismatch repair in stationary-phase mutagenesis during prolonged starvation of Pseudomonas putida.
DNA Repair (Amst). 2006 Apr 8;5(4):505-14
PMID: 16414311
-
The architectural role of nucleoid-associated proteins in the organization of bacterial chromatin: a molecular perspective.
J Struct Biol. 2006 Nov;156(2):262-72
PMID: 16879983
-
DNA bridging: a property shared among H-NS-like proteins.
J Bacteriol. 2005 Mar;187(5):1845-8
PMID: 15716456
-
Promoter-creating mutations in Pseudomonas putida: a model system for the study of mutation in starving bacteria.
Proc Natl Acad Sci U S A. 1997 Apr 1;94(7):3134-9
PMID: 9096358
-
The signals and pathways activating cellular senescence.
Int J Biochem Cell Biol. 2005 May;37(5):961-76
PMID: 15743671
-
Microsatellite instability induced by hydrogen peroxide in Escherichia coli.
Mutat Res. 2000 Feb 14;447(2):187-98
PMID: 10751602
-
IS10 transposition is regulated by DNA adenine methylation.
Cell. 1985 Nov;43(1):117-30
PMID: 3000598
-
Evidence for the adaptive evolution of mutation rates.
Cell. 2000 Jun 9;101(6):581-4
PMID: 10892644
-
Effect of trisodium phosphate adaptation on changes in membrane lipid composition, verotoxin secretion, and acid resistance of Escherichia coli O157:H7 in simulated gastric fluid.
Int J Food Microbiol. 2006 Jan 15;106(1):39-44
PMID: 16213051
-
Genome-wide analysis of the general stress response network in Escherichia coli: sigmaS-dependent genes, promoters, and sigma factor selectivity.
J Bacteriol. 2005 Mar;187(5):1591-603
PMID: 15716429
-
SOS-induced DNA polymerases enhance long-term survival and evolutionary fitness.
Proc Natl Acad Sci U S A. 2002 Jun 25;99(13):8737-41
PMID: 12060704
-
Self-generated diversity produces "insurance effects" in biofilm communities.
Proc Natl Acad Sci U S A. 2004 Nov 23;101(47):16630-5
PMID: 15546998
-
Adaptive, or stationary-phase, mutagenesis, a component of bacterial differentiation in Bacillus subtilis.
J Bacteriol. 2002 Oct;184(20):5641-53
PMID: 12270822
-
Model of the developing tumorigenic phenotype in mammalian cells and the roles of sustained stress and replicative senescence.
J Theor Biol. 2004 Mar 21;227(2):253-64
PMID: 14990389
-
Fis regulates transcriptional induction of RpoS in Salmonella enterica.
J Bacteriol. 2005 Mar;187(5):1568-80
PMID: 15716427
-
Pleiotropic changes resulting from depletion of Era, an essential GTP-binding protein in Escherichia coli.
Mol Microbiol. 1991 Apr;5(4):951-7
PMID: 1906969
-
Bacterial chromatin.
Curr Opin Genet Dev. 2005 Oct;15(5):507-14
PMID: 16099644
-
Mismatch repair protein MutL becomes limiting during stationary-phase mutation.
Genes Dev. 1997 Sep 15;11(18):2426-37
PMID: 9308969
-
Activation of transcription initiation from a stable RNA promoter by a Fis protein-mediated DNA structural transmission mechanism.
Mol Microbiol. 2004 Jul;53(2):665-74
PMID: 15228542
-
Dam methylation: coordinating cellular processes.
Curr Opin Microbiol. 2005 Apr;8(2):154-60
PMID: 15802246
-
Regulatory small RNAs: the key to coordinating global regulatory circuits.
J Bacteriol. 2004 Oct;186(20):6679-80
PMID: 15466017
-
A cell cycle-regulated bacterial DNA methyltransferase is essential for viability.
Proc Natl Acad Sci U S A. 1996 Feb 6;93(3):1210-4
PMID: 8577742
-
Supercoiling-dependent site-specific binding of HU to naked Mu DNA.
J Mol Biol. 1999 Jun 18;289(4):777-84
PMID: 10369760
-
Differential oncogenic Ras signaling and senescence in tumor cells.
Cell Cycle. 2004 Sep;3(9):1201-7
PMID: 15492501
-
Small non-coding RNAs, co-ordinators of adaptation processes in Escherichia coli: the RpoS paradigm.
Mol Microbiol. 2003 May;48(4):855-61
PMID: 12753181
-
The Escherichia coli Fis protein prevents initiation of DNA replication from oriC in vitro.
Nucleic Acids Res. 1996 Sep 15;24(18):3527-32
PMID: 8836178
-
The Escherichia coli GTPase CgtAE cofractionates with the 50S ribosomal subunit and interacts with SpoT, a ppGpp synthetase/hydrolase.
J Bacteriol. 2004 Aug;186(16):5249-57
PMID: 15292126
-
LRP and H-NS--cooperative partners for transcription regulation at Escherichia coli rRNA promoters.
Mol Microbiol. 2005 Nov;58(3):864-76
PMID: 16238633
-
Adaptive mutagenesis: a process that generates almost exclusively beneficial mutations.
Genetica. 1998;102-103(1-6):109-25
PMID: 9720275
-
The bacterial regulatory protein H-NS--a versatile modulator of nucleic acid structures.
Biol Chem. 2002 Jun;383(6):945-60
PMID: 12222684
-
Environmental stress and lesion-bypass DNA polymerases.
Annu Rev Microbiol. 2006;60:231-53
PMID: 16719715
-
Escherichia coli HU protein suppresses DNA-gyrase-mediated illegitimate recombination and SOS induction.
Genes Cells. 1998 Aug;3(8):511-20
PMID: 9797453
-
Regulation of gene expression by histone-like proteins in bacteria.
Curr Opin Genet Dev. 2003 Apr;13(2):179-84
PMID: 12672495
-
Dps protects cells against multiple stresses during stationary phase.
J Bacteriol. 2004 Jul;186(13):4192-8
PMID: 15205421
-
H-NS: a modulator of environmentally regulated gene expression.
Mol Microbiol. 1997 Apr;24(1):7-17
PMID: 9140961
-
The intricate workings of a bacterial epigenetic switch.
Adv Exp Med Biol. 2004;547:83-9
PMID: 15230094
-
Escherichia coli mazEF-mediated cell death is triggered by various stressful conditions.
J Bacteriol. 2004 Jun;186(11):3663-9
PMID: 15150257
-
Induction of microsatellite instability by oxidative DNA damage.
Proc Natl Acad Sci U S A. 1998 Oct 13;95(21):12468-73
PMID: 9770509
-
Translesion synthesis DNA polymerases and control of genome stability.
Front Biosci. 2006 Sep 01;11:2496-517
PMID: 16720328
-
Cyclic changes in the affinity of protein-DNA interactions drive the progression and regulate the outcome of the Tn10 transposition reaction.
Nucleic Acids Res. 2005 Apr 06;33(6):1982-92
PMID: 15814815
-
UV light induces IS10 transposition in Escherichia coli.
Genetics. 1998 Jul;149(3):1173-81
PMID: 9649512
-
Error-prone repair DNA polymerases in prokaryotes and eukaryotes.
Annu Rev Biochem. 2002;71:17-50
PMID: 12045089
-
Escherichia coli prereplication complex assembly is regulated by dynamic interplay among Fis, IHF and DnaA.
Mol Microbiol. 2004 Mar;51(5):1347-59
PMID: 14982629
-
General stress response regulator RpoS in adaptive mutation and amplification in Escherichia coli.
Genetics. 2004 Feb;166(2):669-80
PMID: 15020458
-
Large-scale monitoring of pleiotropic regulation of gene expression by the prokaryotic nucleoid-associated protein, H-NS.
Mol Microbiol. 2001 Apr;40(1):20-36
PMID: 11298273
-
High deleterious genomic mutation rate in stationary phase of Escherichia coli.
Science. 2003 Nov 28;302(5650):1558-60
PMID: 14645846
-
Obg/CtgA, a signaling protein that controls replication, translation, and morphological development?
Dev Cell. 2005 Mar;8(3):300-1
PMID: 15737924
-
Adaptation to famine: a family of stationary-phase genes revealed by microarray analysis.
Proc Natl Acad Sci U S A. 2002 Oct 15;99(21):13471-6
PMID: 12374860
-
Error-prone polymerase, DNA polymerase IV, is responsible for transient hypermutation during adaptive mutation in Escherichia coli.
J Bacteriol. 2003 Jun;185(11):3469-72
PMID: 12754247
-
Regulatory roles for small RNAs in bacteria.
Curr Opin Microbiol. 2003 Apr;6(2):120-4
PMID: 12732300
-
H-NS regulates DNA repair in Shigella.
J Bacteriol. 1998 Oct;180(19):5260-2
PMID: 9748466
-
Hydrogen peroxide-induced microsatellite instability in the Escherichia coli K-12 endogenous tonB gene.
Biochem Biophys Res Commun. 2003 Jun 27;306(2):570-6
PMID: 12804603
-
Insertion sequences.
Microbiol Mol Biol Rev. 1998 Sep;62(3):725-74
PMID: 9729608
-
Adaptive mutations, mutator DNA polymerases and genetic change strategies of pathogens.
Curr Opin Microbiol. 2001 Oct;4(5):586-94
PMID: 11587937
-
Control of rRNA expression by small molecules is dynamic and nonredundant.
Mol Cell. 2003 Jul;12(1):125-34
PMID: 12887898
-
Amplification-mutagenesis--how growth under selection contributes to the origin of genetic diversity and explains the phenomenon of adaptive mutation.
Res Microbiol. 2004 Jun;155(5):342-51
PMID: 15207866
-
Evolutionary significance of stress-induced mutagenesis in bacteria.
Trends Microbiol. 2004 Jun;12(6):264-70
PMID: 15165604
-
When pol I goes into high gear: processive DNA synthesis by pol I in the cell.
Cell Cycle. 2004 Feb;3(2):116-8
PMID: 14712068
-
Induction and inhibition of ciprofloxacin resistance-conferring mutations in hypermutator bacteria.
Antimicrob Agents Chemother. 2006 Jan;50(1):220-5
PMID: 16377689
-
Programmed death in bacteria.
Microbiol Mol Biol Rev. 2000 Sep;64(3):503-14
PMID: 10974124
-
Long-term survival during stationary phase: evolution and the GASP phenotype.
Nat Rev Microbiol. 2006 Feb;4(2):113-20
PMID: 16415927
-
A quantitative UV laser footprinting analysis of the interaction of IHF with specific binding sites: re-evaluation of the effective concentration of IHF in the cell.
J Mol Biol. 1998 Dec 11;284(4):949-61
PMID: 9837718
-
Stress-induced mutagenesis in bacteria.
Science. 2003 May 30;300(5624):1404-9
PMID: 12775833
-
An Escherichia coli chromosomal "addiction module" regulated by guanosine [corrected] 3',5'-bispyrophosphate: a model for programmed bacterial cell death.
Proc Natl Acad Sci U S A. 1996 Jun 11;93(12):6059-63
PMID: 8650219
-
Growth-rate-dependent transcription initiation from the dam P2 promoter.
Gene. 1995 May 19;157(1-2):213-5
PMID: 7607492
-
Genome-wide hypermutation in a subpopulation of stationary-phase cells underlies recombination-dependent adaptive mutation.
EMBO J. 1997 Jun 2;16(11):3303-11
PMID: 9214645
-
The so-called Listeria innocua ferritin is a Dps protein. Iron incorporation, detoxification, and DNA protection properties.
Biochemistry. 2005 Apr 19;44(15):5572-8
PMID: 15823015
-
A new look at adaptive mutations in bacteria.
Acta Biochim Pol. 2000;47(2):451-7
PMID: 11051210
-
Controlling competence in Bacillus subtilis: shared use of regulators.
Microbiology (Reading). 2003 Jan;149(Pt 1):9-17
PMID: 12576575
-
Roles of YqjH and YqjW, homologs of the Escherichia coli UmuC/DinB or Y superfamily of DNA polymerases, in stationary-phase mutagenesis and UV-induced mutagenesis of Bacillus subtilis.
J Bacteriol. 2003 Apr;185(7):2153-60
PMID: 12644484
-
Epigenetic gene silencing in cancer initiation and progression.
Cancer Lett. 2003 Feb 20;190(2):125-33
PMID: 12565166
-
Persisters: a distinct physiological state of E. coli.
BMC Microbiol. 2006 Jun 12;6:53
PMID: 16768798
-
Competence for transformation: a matter of taste.
Curr Opin Microbiol. 1999 Dec;2(6):588-92
PMID: 10607621
-
p53 and p21 regulate error-prone DNA repair to yield a lower mutation load.
Mol Cell. 2006 May 5;22(3):407-13
PMID: 16678112