Home LiteratureArticle Details
PMID: 10438844 Published · ppublish English Journal Article Research Support, U.S. Gov't, P.H.S.

Sequence requirements for the assembly of simian virus 40 T antigen and the T-antigen origin binding domain on the viral core origin of replication.

Journal of virology ·Vol. 73 ·No. 9 ·1999-09-00 ·Pages 7543-55

Kim HY, Barbaro BA, Joo WS, Prack AE, Sreekumar KR, Bullock PA

Abstract

The regions of the simian virus 40 (SV40) core origin that are required for stable assembly of virally encoded T antigen (T-ag) and the T-ag origin binding domain (T-ag-obd(131-260)) have been determined. Binding of the purified T-ag-obd(131-260) is mediated by interactions with the central region of the core origin, site II. In contrast, T-ag binding and hexamer assembly requires a larger region of the core origin that includes both site II and an additional fragment of DNA that may be positioned on either side of site II. These studies indicate that in the context of T-ag, the origin binding domain can engage the pentanucleotides in site II only if a second region of T-ag interacts with one of the flanking sequences. The requirements for T-ag double-hexamer assembly are complex; the nucleotide cofactor present in the reaction modulates the sequence requirements for oligomerization. Nevertheless, these experiments provide additional evidence that only a subset of the SV40 core origin is required for assembly of T-ag double hexamers.

MeSH Terms
Animals Antigens, Polyomavirus Transforming/genetics,metabolism Base Sequence Binding Sites DNA Replication DNA, Viral Molecular Sequence Data Recombinant Fusion Proteins/genetics,metabolism Replication Origin Simian virus 40/genetics,metabolism,physiology Structure-Activity Relationship Virus Replication
Chemicals
Antigens, Polyomavirus Transforming DNA, Viral Recombinant Fusion Proteins
Authors & Affiliations
6 authors, click to expand affiliations / ORCID
Kim H Y
Department of Biochemistry, Tufts University School of Medicine, Boston, Massachusetts, USA.
Barbaro B A
Joo W S
Prack A E
Sreekumar K R
Bullock P A
References (83)
83 references, click to expand
  1. In vitro replication of duplex circular DNA containing the simian virus 40 DNA origin site.
    Proc Natl Acad Sci U S A. 1985 Sep;82(17):5710-4 PMID: 2994044
  2. Binding studies of SV40 T-antigen to SV40 binding site II.
    Nucleic Acids Res. 1985 Sep 25;13(18):6621-34 PMID: 2997717
  3. An immunoaffinity purification procedure for SV40 large T antigen.
    Virology. 1985 Jul 15;144(1):88-100 PMID: 2998049
  4. The binding site on SV40 DNA for a T antigen-related protein.
    Cell. 1978 Jan;13(1):165-79 PMID: 202398
  5. DNA sequencing with chain-terminating inhibitors.
    Proc Natl Acad Sci U S A. 1977 Dec;74(12):5463-7 PMID: 271968
  6. A poly(dT)-stimulated ATPase activity associated with simian virus 40 large T antigen.
    J Biol Chem. 1979 Sep 10;254(17):8113-6 PMID: 224046
  7. recA protein-catalyzed strand assimilation: stimulation by Escherichia coli single-stranded DNA-binding protein.
    Proc Natl Acad Sci U S A. 1980 Feb;77(2):857-61 PMID: 6244589
  8. Cold-sensitive regulatory mutants of simian virus 40.
    J Mol Biol. 1980 Jun 15;140(1):129-42 PMID: 6251230
  9. Construction and analysis of simian virus 40 origins defective in tumor antigen binding and DNA replication.
    Proc Natl Acad Sci U S A. 1980 Nov;77(11):6491-5 PMID: 6256739
  10. Topography of simian virus 40 A protein-DNA complexes: arrangement of pentanucleotide interaction sites at the origin of replication.
    J Virol. 1983 Apr;46(1):143-50 PMID: 6298451
  11. Topography of simian virus 40 A protein-DNA complexes: arrangement of protein bound to the origin of replication.
    J Virol. 1983 Apr;46(1):151-61 PMID: 6298452
  12. Biochemical activities of T-antigen proteins encoded by simian virus 40 A gene deletion mutants.
    Mol Cell Biol. 1983 Feb;3(2):220-8 PMID: 6300658
  13. Binding of simian virus 40 a protein to DNA with deletions at the origin of replication.
    J Virol. 1984 Jan;49(1):9-13 PMID: 6317897
  14. Expression and complex formation of simian virus 40 large T antigen and mouse p53 in insect cells.
    J Virol. 1988 Sep;62(9):3109-19 PMID: 2457111
  15. Localized melting and structural changes in the SV40 origin of replication induced by T-antigen.
    EMBO J. 1988 Oct;7(10):3149-58 PMID: 2846276
  16. Identification of cellular proteins required for simian virus 40 DNA replication.
    J Biol Chem. 1989 Feb 15;264(5):2801-9 PMID: 2536723
  17. ATP-dependent assembly of double hexamers of SV40 T antigen at the viral origin of DNA replication.
    Nature. 1989 Apr 20;338(6217):658-62 PMID: 2539565
  18. Simian virus 40 (SV40) large tumor antigen causes stepwise changes in SV40 origin structure during initiation of DNA replication.
    Proc Natl Acad Sci U S A. 1989 Jun;86(11):3939-43 PMID: 2542957
  19. Initiation of simian virus 40 DNA replication in vitro: pulse-chase experiments identify the first labeled species as topologically unwound.
    Proc Natl Acad Sci U S A. 1989 Jun;86(11):3944-8 PMID: 2542958
  20. T antigen and template requirements for SV40 DNA replication in vitro.
    EMBO J. 1985 Nov;4(11):2933-9 PMID: 2998767
  21. Functional interactions of the simian virus 40 core origin of replication with flanking regulatory sequences.
    J Virol. 1986 Jan;57(1):138-44 PMID: 3001340
  22. Affinity purification of sequence-specific DNA binding proteins.
    Proc Natl Acad Sci U S A. 1986 Aug;83(16):5889-93 PMID: 3461465
  23. DNA helicase activity of SV40 large tumor antigen.
    EMBO J. 1986 Aug;5(8):1939-44 PMID: 3019672
  24. Functional organization of the simian virus 40 origin of DNA replication.
    Mol Cell Biol. 1986 Apr;6(4):1117-28 PMID: 3023870
  25. Domain structure of the simian virus 40 core origin of replication.
    Mol Cell Biol. 1986 May;6(5):1663-70 PMID: 3023900
  26. The adenine-thymine domain of the simian virus 40 core origin directs DNA bending and coordinately regulates DNA replication.
    Mol Cell Biol. 1986 Dec;6(12):4578-84 PMID: 3025662
  27. Simian virus 40 (SV40) DNA replication: SV40 large T antigen unwinds DNA containing the SV40 origin of replication.
    Proc Natl Acad Sci U S A. 1987 Jan;84(1):16-20 PMID: 3025851
  28. The T-antigen-binding domain of the simian virus 40 core origin of replication.
    J Virol. 1987 Jul;61(7):2143-9 PMID: 3035215
  29. The A+T-rich sequence of the simian virus 40 origin is essential for replication and is involved in bending of the viral DNA.
    J Virol. 1987 Jul;61(7):2322-5 PMID: 3035231
  30. Initiation of simian virus 40 DNA replication in vitro: large-tumor-antigen- and origin-dependent unwinding of the template.
    Proc Natl Acad Sci U S A. 1987 Jun;84(11):3643-7 PMID: 3035543
  31. Consensus topography in the ATP binding site of the simian virus 40 and polyomavirus large tumor antigens.
    Proc Natl Acad Sci U S A. 1987 Jun;84(12):4026-30 PMID: 3035562
  32. Unwinding of duplex DNA from the SV40 origin of replication by T antigen.
    Science. 1987 Nov 13;238(4829):964-7 PMID: 2823389
  33. The AT-rich sequence of the SV40 control region influences the binding of SV40 T antigen to binding sites II and III.
    Virology. 1987 Nov;161(1):81-90 PMID: 2823473
  34. ATP enhances the binding of simian virus 40 large T antigen to the origin of replication.
    J Virol. 1987 Dec;61(12):3649-54 PMID: 2824805
  35. Simian virus 40 large tumor antigen requires three core replication origin domains for DNA unwinding and replication in vitro.
    Proc Natl Acad Sci U S A. 1987 Dec;84(23):8267-71 PMID: 2825183
  36. The unwinding of duplex regions in DNA by the simian virus 40 large tumor antigen-associated DNA helicase activity.
    J Biol Chem. 1988 Jan 5;263(1):383-92 PMID: 2826443
  37. ATP-dependent formation of a specialized nucleoprotein structure by simian virus 40 (SV40) large tumor antigen at the SV40 replication origin.
    Proc Natl Acad Sci U S A. 1987 Dec;84(24):8981-5 PMID: 2827164
  38. ATP stimulates the binding of simian virus 40 (SV40) large tumor antigen to the SV40 origin of replication.
    Proc Natl Acad Sci U S A. 1988 Jan;85(1):64-8 PMID: 2829177
  39. The origin DNA-binding and single-stranded DNA-binding domains of simian virus 40 large T antigen are distinct.
    J Virol. 1998 Dec;72(12):10256-9 PMID: 9811771
  40. Two regions of simian virus 40 T antigen determine cooperativity of double-hexamer assembly on the viral origin of DNA replication and promote hexamer interactions during bidirectional origin DNA unwinding.
    J Virol. 1999 Mar;73(3):2201-11 PMID: 9971803
  41. Crystal structures of complexes of PcrA DNA helicase with a DNA substrate indicate an inchworm mechanism.
    Cell. 1999 Apr 2;97(1):75-84 PMID: 10199404
  42. Large T-antigen mutants define multiple steps in the initiation of simian virus 40 DNA replication.
    J Virol. 1989 Oct;63(10):4181-8 PMID: 2550664
  43. Processive replication is contingent on the exonuclease subunit of DNA polymerase III holoenzyme.
    J Biol Chem. 1990 Jan 15;265(2):1171-8 PMID: 2153103
  44. Three domains in the simian virus 40 core origin orchestrate the binding, melting, and DNA helicase activities of T antigen.
    J Virol. 1990 Feb;64(2):509-18 PMID: 2153220
  45. Binding and unwinding--how T antigen engages the SV40 origin of DNA replication.
    Cell. 1990 Jan 26;60(2):181-4 PMID: 2153460
  46. Four major sequence elements of simian virus 40 large T antigen coordinate its specific and nonspecific DNA binding.
    J Virol. 1990 May;64(5):1973-83 PMID: 2157865
  47. Identification of simian virus 40 T-antigen residues important for specific and nonspecific binding to DNA and for helicase activity.
    J Virol. 1990 Oct;64(10):4858-65 PMID: 2168972
  48. The in vitro replication of DNA containing the SV40 origin.
    J Biol Chem. 1990 Oct 25;265(30):18043-6 PMID: 1976634
  49. The DNA-binding properties of polyomavirus large T antigen are altered by ATP and other nucleotides.
    J Virol. 1991 Feb;65(2):687-99 PMID: 1846192
  50. Cooperative assembly of simian virus 40 T-antigen hexamers on functional halves of the replication origin.
    J Virol. 1991 Jun;65(6):2798-806 PMID: 1851855
  51. Simian virus 40 T-antigen DNA helicase is a hexamer which forms a binary complex during bidirectional unwinding from the viral origin of DNA replication.
    J Virol. 1992 Feb;66(2):804-15 PMID: 1309914
  52. Strand-specific recognition of a synthetic DNA replication fork by the SV40 large tumor antigen.
    Science. 1992 Jun 19;256(5064):1656-61 PMID: 1319087
  53. The simian virus 40 T antigen double hexamer assembles around the DNA at the replication origin.
    J Biol Chem. 1992 Jul 15;267(20):14129-37 PMID: 1321135
  54. Structure and function of simian virus 40 large tumor antigen.
    Annu Rev Biochem. 1992;61:55-85 PMID: 1323237
  55. Inhibition of structural changes in the simian virus 40 core origin of replication by mutation of essential origin sequences.
    J Virol. 1992 Sep;66(9):5248-55 PMID: 1323692
  56. Mechanism of activation of simian virus 40 DNA replication by protein phosphatase 2A.
    Mol Cell Biol. 1992 Nov;12(11):4883-95 PMID: 1328866
  57. Unusual properties of a replication-defective mutant SV40 large T antigen.
    Virology. 1993 Feb;192(2):402-14 PMID: 8380658
  58. DNA polymerase alpha stimulates the ATP-dependent binding of simian virus tumor T antigen to the SV40 origin of replication.
    J Biol Chem. 1993 May 25;268(15):11018-27 PMID: 8388381
  59. Cooperative assembly of the bovine papilloma virus E1 and E2 proteins on the replication origin requires an intact E2 binding site.
    J Biol Chem. 1993 Jul 25;268(21):15795-803 PMID: 8393453
  60. Phosphorylation and active ATP hydrolysis are not required for SV40 T antigen hexamer formation.
    J Biol Chem. 1993 Nov 25;268(33):24647-54 PMID: 8227024
  61. The DNA-binding domain of simian virus 40 tumor antigen has multiple functions.
    J Virol. 1993 Dec;67(12):7608-11 PMID: 8230479
  62. DNA replication origins in animal cells: a question of context?
    Science. 1994 Feb 4;263(5147):639-40 PMID: 8303270
  63. Strand and face: the topography of interactions between the SV40 origin of replication and T-antigen during the initiation of replication.
    EMBO J. 1994 Feb 15;13(4):982-92 PMID: 8112311
  64. Chaperone power in a virus?
    Trends Biochem Sci. 1994 Jul;19(7):277-8 PMID: 7914037
  65. Sequences flanking the pentanucleotide T-antigen binding sites in the polyomavirus core origin help determine selectivity of DNA replication.
    J Virol. 1995 Dec;69(12):7570-8 PMID: 7494263
  66. Mechanisms of simian virus 40 T-antigen activation by phosphorylation of threonine 124.
    J Virol. 1996 Jun;70(6):3887-93 PMID: 8648725
  67. Crystal structure of a DExx box DNA helicase.
    Nature. 1996 Nov 28;384(6607):379-83 PMID: 8934527
  68. Solution structure of the origin DNA-binding domain of SV40 T-antigen.
    Nat Struct Biol. 1996 Dec;3(12):1034-9 PMID: 8946857
  69. Initiation of SV40 DNA replication in vitro: analysis of the role played by sequences flanking the core origin on initial synthesis events.
    Virology. 1997 Jan 20;227(2):460-73 PMID: 9018145
  70. Purification of the simian virus 40 (SV40) T antigen DNA-binding domain and characterization of its interactions with the SV40 origin.
    J Virol. 1997 May;71(5):3972-85 PMID: 9094674
  71. Six molecules of SV40 large T antigen assemble in a propeller-shaped particle around a channel.
    J Mol Biol. 1997 Apr 25;268(1):15-20 PMID: 9149137
  72. DnaJ/hsp40 chaperone domain of SV40 large T antigen promotes efficient viral DNA replication.
    Genes Dev. 1997 May 1;11(9):1098-110 PMID: 9159391
  73. The amino-terminal transforming region of simian virus 40 large T and small t antigens functions as a J domain.
    Mol Cell Biol. 1997 Aug;17(8):4761-73 PMID: 9234732
  74. Major domain swiveling revealed by the crystal structures of complexes of E. coli Rep helicase bound to single-stranded DNA and ADP.
    Cell. 1997 Aug 22;90(4):635-47 PMID: 9288744
  75. Dimerization of simian virus 40 T-antigen hexamers activates T-antigen DNA helicase activity.
    J Virol. 1997 Nov;71(11):8766-73 PMID: 9343236
  76. The initiation of simian virus 40 DNA replication in vitro.
    Crit Rev Biochem Mol Biol. 1997;32(6):503-68 PMID: 9444478
  77. Assembly of T-antigen double hexamers on the simian virus 40 core origin requires only a subset of the available binding sites.
    Mol Cell Biol. 1998 May;18(5):2677-87 PMID: 9566887
  78. The DNA replication fork in eukaryotic cells.
    Annu Rev Biochem. 1998;67:721-51 PMID: 9759502
  79. Stoichiometry and mechanism of assembly of SV40 T antigen complexes with the viral origin of DNA replication and DNA polymerase alpha-primase.
    Biochemistry. 1998 Nov 3;37(44):15345-52 PMID: 9799495
  80. The nucleotide binding site detected by affinity labeling in the large T proteins of polyoma and SV40 viruses is distinct from their ATPase catalytic site.
    J Biol Chem. 1984 Dec 25;259(24):15196-203 PMID: 6096361
  81. Mutational analysis of simian virus 40 large T antigen DNA binding sites.
    EMBO J. 1984 Dec 20;3(13):3247-55 PMID: 6098470
  82. Purification of simian virus 40 large T antigen by immunoaffinity chromatography.
    J Virol. 1985 Mar;53(3):1001-4 PMID: 2983081
  83. Seventeen base pairs of region I encode a novel tripartite binding signal for SV40 T antigen.
    Cell. 1985 Sep;42(2):539-48 PMID: 2992803
Article Info
Journal
Journal of virology
Abbr.
J Virol
ISSN
0022-538X
Published
1999-09-00
Pages
7543-55
Language
English
Region
United States
NLM ID
0113724
PMCID
PMC104281
Subset
IM
Grants
NIGMS NIH HHS · R01 GM053618 · United States
NIGMS NIH HHS · R01 GM055397 · United States
NIGMS NIH HHS · 5R01GM53618 · United States
NIGMS NIH HHS · 9R01GM55397 · United States
Analysis Services
Analysis Services

Contact

No. 2 Wenbo Road, Zhangqiu District, Jinan, Shandong

Qilu Normal University · Genelibs Bioinformatics Lab

750 Shunhua Rd, Jinan

2F, Bldg F, University Science Park

Tel: 0531-88819269

WeChat Official Account

Follow our WeChat subscription account for real-time updates and the latest in medical and biological research.


Business Email

E-mail: product@genelibs.com