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PMID: 9628878 Published · ppublish English Journal Article Research Support, Non-U.S. Gov't

In vitro chromatin remodelling by chromatin accessibility complex (CHRAC) at the SV40 origin of DNA replication.

The EMBO journal ·Vol. 17 ·No. 12 ·1998-06-15 ·Pages 3428-38

Alexiadis V, Varga-Weisz PD, Bonte E, Becker PB, Gruss C

Abstract

DNA replication is initiated by binding of initiation factors to the origin of replication. Nucleosomes are known to inhibit the access of the replication machinery to origin sequences. Recently, nucleosome remodelling factors have been identified that increase the accessibility of nucleosomal DNA to transcription regulators. To test whether the initiation of DNA replication from an origin covered by nucleosomes would also benefit from the action of nucleosome remodelling factors, we reconstituted SV40 DNA into chromatin in Drosophila embryo extracts. In the presence of T-antigen and ATP, a chromatin-associated cofactor allowed efficient replication from a nucleosomal origin in vitro. In search of the energy-dependent cofactor responsible we found that purified 'chromatin accessibility complex' (CHRAC) was able to alter the nucleosomal structure at the origin allowing the binding of T-antigen and efficient initiation of replication. These experiments provide evidence for the involvement of a nucleosome remodelling machine in structural changes at the SV40 origin of DNA replication in vitro.

MeSH Terms
Animals Chromatin/genetics DNA Replication Drosophila/embryology,genetics Histones/metabolism Nucleosomes/metabolism Replication Origin/genetics Simian virus 40/genetics
Chemicals
Chromatin Histones Nucleosomes
Authors & Affiliations
5 authors, click to expand affiliations / ORCID
Alexiadis V
University of Konstanz, Division of Biology, Konstanz, Germany.
Varga-Weisz P D
Bonte E
Becker P B
Gruss C
References (67)
67 references, click to expand
  1. Accessibility to topoisomerases I and II regulates the replication efficiency of simian virus 40 minichromosomes.
    Mol Cell Biol. 1997 May;17(5):2624-30 PMID: 9111332
  2. The establishment of active promoters in chromatin.
    Bioessays. 1994 Aug;16(8):541-7 PMID: 8086003
  3. ATP-dependent nucleosome reconfiguration and transcriptional activation from preassembled chromatin templates.
    Science. 1994 Dec 23;266(5193):2007-11 PMID: 7801129
  4. Chromatin proteins involved in the initiation of DNA replication.
    Curr Opin Genet Dev. 1997 Apr;7(2):152-7 PMID: 9115430
  5. ACF, an ISWI-containing and ATP-utilizing chromatin assembly and remodeling factor.
    Cell. 1997 Jul 11;90(1):145-55 PMID: 9230310
  6. Chromatin-remodelling factor CHRAC contains the ATPases ISWI and topoisomerase II.
    Nature. 1997 Aug 7;388(6642):598-602 PMID: 9252192
  7. Studies on deoxyribonucleoprotein structure. Redistribution of proteins in mixtures of deoxyribonucleoproteins, DNA and RNA.
    Eur J Biochem. 1971 Sep 24;22(2):235-45 PMID: 5116611
  8. A nucleosome-free region in SV40 minichromosomes.
    Nature. 1980 May 22;285(5762):263-5 PMID: 6246449
  9. Absence of nucleosomes in a fraction of SV40 chromatin between the origin of replication and the region coding for the late leader RNA.
    Cell. 1980 May;20(1):65-73 PMID: 6248237
  10. Replication timing of genes and middle repetitive sequences.
    Science. 1984 May 18;224(4650):686-92 PMID: 6719109
  11. Simian virus 40 DNA replication in vitro.
    Proc Natl Acad Sci U S A. 1984 Nov;81(22):6973-7 PMID: 6095264
  12. An immunoaffinity purification procedure for SV40 large T antigen.
    Virology. 1985 Jul 15;144(1):88-100 PMID: 2998049
  13. Replication and supercoiling of simian virus 40 DNA in cell extracts from human cells.
    Mol Cell Biol. 1985 Aug;5(8):2051-60 PMID: 3018548
  14. DNA helicase activity of SV40 large tumor antigen.
    EMBO J. 1986 Aug;5(8):1939-44 PMID: 3019672
  15. Structure of replicating simian virus 40 minichromosomes. The replication fork, core histone segregation and terminal structures.
    J Mol Biol. 1986 May 5;189(1):189-204 PMID: 3023620
  16. Cellular factors required for multiple stages of SV40 DNA replication in vitro.
    EMBO J. 1988 Apr;7(4):1211-8 PMID: 2841119
  17. Expression of simian virus 40 T antigen in insect cells using a baculovirus expression vector.
    Virology. 1988 Nov;167(1):72-81 PMID: 3055666
  18. Transcriptional activator nuclear factor I stimulates the replication of SV40 minichromosomes in vivo and in vitro.
    Cell. 1989 Nov 3;59(3):541-51 PMID: 2553273
  19. Preferential, cooperative binding of DNA topoisomerase II to scaffold-associated regions.
    EMBO J. 1989 Dec 20;8(13):3997-4006 PMID: 2556260
  20. Initiation of eukaryotic DNA replication in vitro.
    Annu Rev Cell Biol. 1989;5:197-245 PMID: 2557059
  21. Three domains in the simian virus 40 core origin orchestrate the binding, melting, and DNA helicase activities of T antigen.
    J Virol. 1990 Feb;64(2):509-18 PMID: 2153220
  22. Nucleosome positioning can affect the function of a cis-acting DNA element in vivo.
    Nature. 1990 Jan 25;343(6256):387-9 PMID: 2405281
  23. On the biological role of histone acetylation.
    Biochem J. 1990 Jan 1;265(1):23-38 PMID: 2405837
  24. Replication factors required for SV40 DNA replication in vitro. I. DNA structure-specific recognition of a primer-template junction by eukaryotic DNA polymerases and their accessory proteins.
    J Biol Chem. 1991 Jan 25;266(3):1950-60 PMID: 1671045
  25. The initiation of chromosomal DNA replication in eukaryotes.
    Trends Genet. 1990 Dec;6(12):427-32 PMID: 2087786
  26. A position effect on the time of replication origin activation in yeast.
    Cell. 1992 Jan 24;68(2):333-9 PMID: 1733502
  27. Getting started: regulating the initiation of DNA replication in yeast.
    Annu Rev Microbiol. 1997;51:125-49 PMID: 9343346
  28. Initiation of DNA replication in eukaryotic cells.
    Annu Rev Cell Dev Biol. 1997;13:293-332 PMID: 9442876
  29. Stimulation of replication efficiency of a chromatin template by chromosomal protein HMG-17.
    J Biol Chem. 1998 Apr 17;273(16):9409-14 PMID: 9545265
  30. Role of nucleosome remodeling factor NURF in transcriptional activation of chromatin.
    Mol Cell. 1997 Dec;1(1):141-50 PMID: 9659911
  31. In vivo topoisomerase II cleavage of the Drosophila histone and satellite III repeats: DNA sequence and structural characteristics.
    EMBO J. 1992 Feb;11(2):705-16 PMID: 1311255
  32. Cell-free system for assembly of transcriptionally repressed chromatin from Drosophila embryos.
    Mol Cell Biol. 1992 May;12(5):2241-9 PMID: 1569951
  33. Protein-DNA interactions at a yeast replication origin.
    Nature. 1992 May 14;357(6374):169-72 PMID: 1579168
  34. Preincubation of T antigen with DNA overcomes repression of SV40 DNA replication by nucleosome assembly.
    J Biol Chem. 1992 May 25;267(15):10910-3 PMID: 1587867
  35. Structure and function of simian virus 40 large tumor antigen.
    Annu Rev Biochem. 1992;61:55-85 PMID: 1323237
  36. The acidic transcriptional activation domains of VP16 and p53 bind the cellular replication protein A and stimulate in vitro BPV-1 DNA replication.
    Cell. 1993 Jun 18;73(6):1207-21 PMID: 8390328
  37. The transactivator proteins VP16 and GAL4 bind replication factor A.
    Cell. 1993 Jun 18;73(6):1223-32 PMID: 8513504
  38. Preferential and asymmetric interaction of linker histones with 5S DNA in the nucleosome.
    Proc Natl Acad Sci U S A. 1993 Jul 15;90(14):6415-9 PMID: 8341648
  39. Eukaryotic DNA replication: anatomy of an origin.
    Annu Rev Biochem. 1993;62:29-63 PMID: 8352592
  40. Disruption of the nucleosomes at the replication fork.
    EMBO J. 1993 Dec;12(12):4533-45 PMID: 8223463
  41. Transcriptional repression by nucleosomes but not H1 in reconstituted preblastoderm Drosophila chromatin.
    EMBO J. 1994 Jan 15;13(2):373-9 PMID: 8313882
  42. ATP-dependent nucleosome disruption at a heat-shock promoter mediated by binding of GAGA transcription factor.
    Nature. 1994 Feb 10;367(6463):525-32 PMID: 8107823
  43. Identification and characterization of Drosophila relatives of the yeast transcriptional activator SNF2/SWI2.
    Mol Cell Biol. 1994 Apr;14(4):2225-34 PMID: 7908117
  44. Architectural variations of inducible eukaryotic promoters: preset and remodeling chromatin structures.
    Bioessays. 1994 Mar;16(3):165-70 PMID: 8166669
  45. Simian virus 40 origin- and T-antigen-dependent DNA replication with Drosophila factors in vitro.
    Mol Cell Biol. 1994 Aug;14(8):5114-22 PMID: 8035793
  46. Multiple functions of dynamic histone acetylation.
    J Cell Biochem. 1994 May;55(1):98-105 PMID: 8083305
  47. Re-replication of SV40 minichromosomes is inhibited at the stage of chain elongation.
    Nucleic Acids Res. 1994 Dec 11;22(24):5265-70 PMID: 7816615
  48. Chromatin assembly extracts from Drosophila embryos.
    Methods Cell Biol. 1994;44:207-23 PMID: 7707953
  49. Influence of histone H1 on the in vitro replication of DNA and chromatin.
    Nucleic Acids Res. 1995 Mar 11;23(5):773-8 PMID: 7708492
  50. Chromatin remodeling by GAGA factor and heat shock factor at the hypersensitive Drosophila hsp26 promoter in vitro.
    EMBO J. 1995 Apr 18;14(8):1727-36 PMID: 7737124
  51. The SWI-SNF complex: a chromatin remodeling machine?
    Trends Biochem Sci. 1995 Apr;20(4):143-6 PMID: 7770913
  52. Energy-dependent chromatin accessibility and nucleosome mobility in a cell-free system.
    EMBO J. 1995 May 15;14(10):2209-16 PMID: 7774579
  53. Unwinding of chromatin by the SV40 large T antigen DNA helicase.
    EMBO J. 1995 Jul 3;14(13):3215-25 PMID: 7621834
  54. Eukaryotic DNA replication.
    Curr Opin Cell Biol. 1995 Jun;7(3):414-20 PMID: 7662373
  55. Histone acetylation in chromatin and chromosomes.
    Semin Cell Biol. 1995 Aug;6(4):229-36 PMID: 8562915
  56. Mechanism of protein access to specific DNA sequences in chromatin: a dynamic equilibrium model for gene regulation.
    J Mol Biol. 1995 Nov 24;254(2):130-49 PMID: 7490738
  57. Purification and properties of an ATP-dependent nucleosome remodeling factor.
    Cell. 1995 Dec 15;83(6):1011-20 PMID: 8521501
  58. ISWI, a member of the SWI2/SNF2 ATPase family, encodes the 140 kDa subunit of the nucleosome remodeling factor.
    Cell. 1995 Dec 15;83(6):1021-6 PMID: 8521502
  59. Repression and activation by multiprotein complexes that alter chromatin structure.
    Genes Dev. 1996 Apr 15;10(8):905-20 PMID: 8608939
  60. Role of amino-terminal histone domains in chromatin replication.
    Mol Cell Biol. 1996 Jun;16(6):2888-97 PMID: 8649399
  61. Multiple SWItches to turn on chromatin?
    Curr Opin Genet Dev. 1996 Apr;6(2):171-5 PMID: 8722173
  62. Chromatin unfolds.
    Cell. 1996 Jul 12;86(1):13-9 PMID: 8689680
  63. Purification and biochemical heterogeneity of the mammalian SWI-SNF complex.
    EMBO J. 1996 Oct 1;15(19):5370-82 PMID: 8895581
  64. Remodeling chromatin structures for transcription: what happens to the histones?
    Bioessays. 1996 Nov;18(11):875-84 PMID: 8939065
  65. Role for cyclin A-dependent kinase in DNA replication in human S phase cell extracts.
    J Biol Chem. 1996 Dec 6;271(49):31627-37 PMID: 8940182
  66. RSC, an essential, abundant chromatin-remodeling complex.
    Cell. 1996 Dec 27;87(7):1249-60 PMID: 8980231
  67. Influence of core histone acetylation on SV40 minichromosome replication in vitro.
    Chromosoma. 1997 Apr;105(6):324-31 PMID: 9087374
Article Info
Journal
The EMBO journal
Abbr.
EMBO J
ISSN
0261-4189
Published
1998-06-15
Pages
3428-38
Language
English
Region
England
NLM ID
8208664
PMCID
PMC1170679
Subset
IM
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