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PMID: 8602150 Published · ppublish English Journal Article Research Support, Non-U.S. Gov't

The multifunctional transcription factors Abf1p, Rap1p and Reb1p are required for full transcriptional activation of the chromosomal PGK gene in Saccharomyces cerevisiae.

Molecular & general genetics : MGG ·Vol. 250 ·No. 3 ·1996-02-25 ·Pages 348-56

Packham EA, Graham IR, Chambers A

Abstract

We have identified two new transcription factor binding sites upstream of the previously defined UAS within the phosphoglycerate kinase (PGK) gene promoter in Saccharomyces cerevisiae. These sites are bound in vitro by the multifunctional factors Cpf1p and Reb1p. We have generated targeted deletions of Rap1p, Abf1p and Reb1p binding sites in the promoter of the chromosomal copy of the PGK gene. Northern blot analysis confirmed that most PGK promoter activity is mediated through the Rap1p binding site. However, significant effects are also mediated through both the Reb1p and Abf1p sites. In contrast, when the promoter is present on a high-copy-number plasmid, both the Abf1p and Reb1p sites play no role in transcriptional activation. The role of Cpf1p was examined using a cpf1 null strain. Cpf1p was found to have little if any, effect on activation of either the chromosomal or plasmid-borne PGK gene.

MeSH Terms
Base Sequence Basic Helix-Loop-Helix Leucine Zipper Transcription Factors Binding Sites Blotting, Northern Cloning, Molecular DNA Primers/chemistry DNA-Binding Proteins/genetics,metabolism,physiology Electrophoresis, Polyacrylamide Gel Fungal Proteins/genetics,metabolism,physiology GTP-Binding Proteins/genetics,metabolism Gene Expression Regulation, Fungal/genetics Molecular Sequence Data Phosphoglycerate Kinase/genetics,metabolism Promoter Regions, Genetic/genetics Saccharomyces cerevisiae/enzymology,genetics Saccharomyces cerevisiae Proteins Sequence Deletion/genetics Transcription Factors/genetics,metabolism Transcription, Genetic/genetics Transcriptional Activation rap GTP-Binding Proteins
Chemicals
ABF1 protein, S cerevisiae Basic Helix-Loop-Helix Leucine Zipper Transcription Factors CBF1 protein, S cerevisiae DNA Primers DNA-Binding Proteins Fungal Proteins REB1 protein, S cerevisiae Saccharomyces cerevisiae Proteins Transcription Factors Phosphoglycerate Kinase GTP-Binding Proteins rap GTP-Binding Proteins
Authors & Affiliations
3 authors, click to expand affiliations / ORCID
Packham E A
Department of Genetics, University of Nottingham, Queen's Medical Centre, Nottingham, UK.
Graham I R
Chambers A
References (56)
56 references, click to expand
  1. Replacement of chromosome segments with altered DNA sequences constructed in vitro.
    Proc Natl Acad Sci U S A. 1979 Oct;76(10):4951-5 PMID: 388424
  2. TUF factor binds to the upstream region of the pyruvate decarboxylase structural gene (PDC1) of Saccharomyces cerevisiae.
    Mol Gen Genet. 1990 Sep;223(3):449-56 PMID: 2270085
  3. Sequences that regulate the divergent GAL1-GAL10 promoter in Saccharomyces cerevisiae.
    Mol Cell Biol. 1984 Aug;4(8):1440-8 PMID: 6092912
  4. An ARS/silencer binding factor also activates two ribosomal protein genes in yeast.
    Nucleic Acids Res. 1989 Jul 11;17(13):4917-23 PMID: 2668873
  5. The yeast protein Gcr1p binds to the PGK UAS and contributes to the activation of transcription of the PGK gene.
    Mol Gen Genet. 1994 Nov 15;245(4):506-11 PMID: 7808400
  6. Isolation and characterization of the yeast 3-phosphoglycerokinase gene (PGK) by an immunological screening technique.
    J Biol Chem. 1980 Dec 25;255(24):12073-80 PMID: 6254992
  7. Efficient synthesis of enzymatically active calf chymosin in Saccharomyces cerevisiae.
    Gene. 1983 Sep;24(1):1-14 PMID: 6313478
  8. Purification and cloning of a DNA binding protein from yeast that binds to both silencer and activator elements.
    Cell. 1987 Dec 4;51(5):721-32 PMID: 3315231
  9. DNA binding of CPF1 is required for optimal centromere function but not for maintaining methionine prototrophy in yeast.
    Nucleic Acids Res. 1991 Jun 11;19(11):2961-9 PMID: 2057354
  10. The ABF1 factor is the transcriptional activator of the L2 ribosomal protein genes in Saccharomyces cerevisiae.
    Mol Cell Biol. 1990 May;10(5):2437-41 PMID: 2183035
  11. A general upstream binding factor for genes of the yeast translational apparatus.
    EMBO J. 1985 Dec 16;4(13A):3539-47 PMID: 3912170
  12. Multiple factors bind the upstream activation sites of the yeast enolase genes ENO1 and ENO2: ABFI protein, like repressor activator protein RAP1, binds cis-acting sequences which modulate repression or activation of transcription.
    Mol Cell Biol. 1990 Sep;10(9):4872-85 PMID: 2201905
  13. Separation of transcriptional activation and silencing functions of the RAP1-encoded repressor/activator protein 1: isolation of viable mutants affecting both silencing and telomere length.
    Proc Natl Acad Sci U S A. 1991 Sep 1;88(17):7749-53 PMID: 1881914
  14. Efficient transcription of the glycolytic gene ADH1 and three translational component genes requires the GCR1 product, which can act through TUF/GRF/RAP binding sites.
    Mol Cell Biol. 1990 Feb;10(2):859-62 PMID: 2405258
  15. Identification of two factors which bind to the upstream sequences of a number of nuclear genes coding for mitochondrial proteins and to genetic elements important for cell division in yeast.
    Nucleic Acids Res. 1988 Aug 11;16(15):7287-301 PMID: 3045755
  16. A Reb1p-binding site is required for efficient activation of the yeast RAP1 gene, but multiple binding sites for Rap1p are not essential.
    Mol Microbiol. 1994 Jun;12(6):931-40 PMID: 7934900
  17. Identification of silencer binding proteins from yeast: possible roles in SIR control and DNA replication.
    EMBO J. 1987 Feb;6(2):461-7 PMID: 15981337
  18. GCR1, a transcriptional activator in Saccharomyces cerevisiae, complexes with RAP1 and can function without its DNA binding domain.
    EMBO J. 1993 Jun;12(6):2431-7 PMID: 8508768
  19. Identification of an upstream activating sequence and an upstream repressible sequence of the pyruvate kinase gene of the yeast Saccharomyces cerevisiae.
    Mol Cell Biol. 1989 Feb;9(2):442-51 PMID: 2651900
  20. The GCR1 requirement for yeast glycolytic gene expression is suppressed by dominant mutations in the SGC1 gene, which encodes a novel basic-helix-loop-helix protein.
    Mol Cell Biol. 1995 May;15(5):2646-53 PMID: 7739544
  21. A REB1-binding site is required for GCN4-independent ILV1 basal level transcription and can be functionally replaced by an ABF1-binding site.
    Mol Cell Biol. 1992 Dec;12(12):5516-26 PMID: 1448083
  22. Global regulation of mitochondrial biogenesis in Saccharomyces cerevisiae: ABF1 and CPF1 play opposite roles in regulating expression of the QCR8 gene, which encodes subunit VIII of the mitochondrial ubiquinol-cytochrome c oxidoreductase.
    Mol Cell Biol. 1992 Jun;12(6):2872-83 PMID: 1317009
  23. Purification of a yeast protein that binds to origins of DNA replication and a transcriptional silencer.
    Proc Natl Acad Sci U S A. 1988 Apr;85(7):2120-4 PMID: 3281162
  24. A yeast telomere binding activity binds to two related telomere sequence motifs and is indistinguishable from RAP1.
    Curr Genet. 1989 Oct;16(4):225-39 PMID: 2697465
  25. CPF1, a yeast protein which functions in centromeres and promoters.
    EMBO J. 1990 Dec;9(12):4017-26 PMID: 2249662
  26. Regulation of yeast COX6 by the general transcription factor ABF1 and separate HAP2- and heme-responsive elements.
    Mol Cell Biol. 1992 May;12(5):2302-14 PMID: 1314953
  27. Conservation of high efficiency promoter sequences in Saccharomyces cerevisiae.
    Nucleic Acids Res. 1982 Apr 24;10(8):2625-37 PMID: 6281737
  28. The upstream repression sequence from the yeast enolase gene ENO1 is a complex regulatory element that binds multiple trans-acting factors including REB1.
    J Biol Chem. 1994 Apr 1;269(13):9790-7 PMID: 8144571
  29. Two DNA-binding factors recognize specific sequences at silencers, upstream activating sequences, autonomously replicating sequences, and telomeres in Saccharomyces cerevisiae.
    Mol Cell Biol. 1988 Jan;8(1):210-25 PMID: 3275867
  30. An upstream transcription factor, USF (MLTF), facilitates the formation of preinitiation complexes during in vitro chromatin assembly.
    EMBO J. 1990 Apr;9(4):1299-308 PMID: 2323340
  31. Characterization of the DNA-binding activity of GCR1: in vivo evidence for two GCR1-binding sites in the upstream activating sequence of TPI of Saccharomyces cerevisiae.
    Mol Cell Biol. 1992 Jun;12(6):2690-700 PMID: 1588965
  32. Chromosome Mapping in Saccharomyces: Centromere-Linked Genes.
    Genetics. 1960 Aug;45(8):1085-110 PMID: 17247984
  33. Characterization of TPI gene expression in isogeneic wild-type and gcr1-deletion mutant strains of Saccharomyces cerevisiae.
    Nucleic Acids Res. 1990 Dec 11;18(23):7099-107 PMID: 2263469
  34. ARS binding factor 1 binds adjacent to RAP1 at the UASs of the yeast glycolytic genes PGK and PYK1.
    Nucleic Acids Res. 1990 Sep 25;18(18):5393-9 PMID: 2120676
  35. A system to study transcription by yeast RNA polymerase I within the chromosomal context: functional analysis of the ribosomal DNA enhancer and the RBP1/REB1 binding sites.
    EMBO J. 1992 Dec;11(12 ):4665-74 PMID: 1425596
  36. Characterization of the transcriptional potency of sub-elements of the UAS of the yeast PGK gene in a PGK mini-promoter.
    Nucleic Acids Res. 1989 Nov 25;17(22):9205-18 PMID: 2685757
  37. RAP1 protein interacts with yeast telomeres in vivo: overproduction alters telomere structure and decreases chromosome stability.
    Cell. 1990 Nov 16;63(4):739-50 PMID: 2225074
  38. A model for transcription termination by RNA polymerase I.
    Cell. 1994 Nov 4;79(3):527-34 PMID: 7954818
  39. A yeast ribosomal DNA-binding protein that binds to the rDNA enhancer and also close to the site of Pol I transcription initiation is not important for enhancer functioning.
    Curr Genet. 1989 Dec;16(5-6):351-9 PMID: 2692853
  40. The gene encoding ARS-binding factor I is essential for the viability of yeast.
    Genes Dev. 1989 Dec;3(12A):1926-39 PMID: 2620828
  41. Chromatin structure modulation in Saccharomyces cerevisiae by centromere and promoter factor 1.
    Mol Cell Biol. 1994 Aug;14(8):5229-41 PMID: 8035802
  42. Isolation and DNA-binding characteristics of a protein involved in transcription activation of two divergently transcribed, essential yeast genes.
    EMBO J. 1989 Oct;8(10):3029-37 PMID: 2684633
  43. Analysis of upstream activation sites of yeast ribosomal protein genes.
    Nucleic Acids Res. 1987 Aug 11;15(15):6037-48 PMID: 3627978
  44. The UAS of the yeast PGK gene is composed of multiple functional elements.
    Nucleic Acids Res. 1988 Sep 12;16(17):8245-60 PMID: 3047680
  45. A yeast protein that influences the chromatin structure of UASG and functions as a powerful auxiliary gene activator.
    Genes Dev. 1990 Apr;4(4):503-14 PMID: 2361590
  46. REB1, a yeast DNA-binding protein with many targets, is essential for growth and bears some resemblance to the oncogene myb.
    Mol Cell Biol. 1990 Oct;10(10):5226-34 PMID: 2204808
  47. Efficient expression of the Saccharomyces cerevisiae PGK gene depends on an upstream activation sequence but does not require TATA sequences.
    Mol Cell Biol. 1986 Dec;6(12):4335-43 PMID: 3540610
  48. A multi-component upstream activation sequence of the Saccharomyces cerevisiae glyceraldehyde-3-phosphate dehydrogenase gene promoter.
    Mol Gen Genet. 1991 Dec;231(1):22-32 PMID: 1753943
  49. A positive selection for mutants lacking orotidine-5'-phosphate decarboxylase activity in yeast: 5-fluoro-orotic acid resistance.
    Mol Gen Genet. 1984;197(2):345-6 PMID: 6394957
  50. Transcriptional control of the Saccharomyces cerevisiae PGK gene by RAP1.
    Mol Cell Biol. 1989 Dec;9(12):5516-24 PMID: 2685568
  51. Involvement of the silencer and UAS binding protein RAP1 in regulation of telomere length.
    Science. 1990 Oct 26;250(4980):549-53 PMID: 2237406
  52. Concerted action of the transcriptional activators REB1, RAP1, and GCR1 in the high-level expression of the glycolytic gene TPI.
    Mol Cell Biol. 1993 Jan;13(1):543-50 PMID: 8417350
  53. The gcr (glycolysis regulation) mutation of Saccharomyces cerevisiae.
    J Biol Chem. 1981 Dec 25;256(24):13074-8 PMID: 7031056
  54. Role of the Saccharomyces cerevisiae general regulatory factor CP1 in methionine biosynthetic gene transcription.
    Mol Cell Biol. 1995 Apr;15(4):1879-88 PMID: 7891681
  55. Similarity between the transcriptional silencer binding proteins ABF1 and RAP1.
    Science. 1989 Nov 24;246(4933):1034-8 PMID: 2511628
  56. A bipartite DNA-binding domain in yeast Reb1p.
    Mol Cell Biol. 1993 Feb;13(2):1173-82 PMID: 8423784
Article Info
Journal
Molecular & general genetics : MGG
Abbr.
Mol Gen Genet
ISSN
0026-8925
Published
1996-02-25
Pages
348-56
Language
English
Region
Germany
NLM ID
0125036
Subset
IM
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