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PMID: 8389977 Published · ppublish English Journal Article Research Support, Non-U.S. Gov't

Growth-related expression of ribosomal protein genes in Saccharomyces cerevisiae.

Molecular & general genetics : MGG ·Vol. 239 ·No. 1-2 ·1993-05-00 ·Pages 196-204

Kraakman LS, Griffioen G, Zerp S, Groeneveld P, Thevelein JM, Mager WH, Planta RJ

Abstract

The rate of ribosomal protein gene (rp-gene) transcription in yeast is accurately adjusted to the cellular requirement for ribosomes under various growth conditions. However, the molecular mechanisms underlying this co-ordinated transcriptional control have not yet been elucidated. Transcriptional activation of rp-genes is mediated through two different multifunctional transacting factors, ABF1 and RAP1. In this report, we demonstrate that changes in cellular rp-mRNA levels during varying growth conditions are not parallelled by changes in the in vitro binding capacity of ABF1 or RAP1 for their cognate sequences. In addition, the nutritional upshift response of rp-genes observed after addition of glucose to a culture growing on a non-fermentative carbon source turns out not to be the result of increased expression of the ABF1 and RAP1 genes or of elevated DNA-binding activity of these factors. Therefore, growth rate-dependent transcription regulation of rp-genes is most probably not mediated by changes in the efficiency of binding of ABF1 and RAP1 to the upstream activation sites of these genes, but rather through other alterations in the efficiency of transcription activation. Furthermore, we tested the possibility that cAMP may play a role in elevating rp-gene expression during a nutritional shift-up. We found that the nutritional upshift response occurs normally in several mutants defective in cAMP metabolism.

MeSH Terms
Base Sequence Blotting, Northern Cyclic AMP/biosynthesis DNA, Fungal DNA-Binding Proteins/genetics Ethanol/metabolism Fungal Proteins/genetics Gene Expression Regulation, Fungal Genes, Fungal Glucose/metabolism Molecular Sequence Data Repressor Proteins/genetics Ribosomal Proteins/genetics Saccharomyces cerevisiae/genetics,growth & development Saccharomyces cerevisiae Proteins Signal Transduction Telomere-Binding Proteins Transcription Factors Transcription, Genetic
Chemicals
ABF1 protein, S cerevisiae DNA, Fungal DNA-Binding Proteins Fungal Proteins Repressor Proteins Ribosomal Proteins Saccharomyces cerevisiae Proteins Telomere-Binding Proteins Transcription Factors RIF1 protein, S cerevisiae Ethanol Cyclic AMP Glucose
Authors & Affiliations
7 authors, click to expand affiliations / ORCID
Kraakman L S
Department of Biochemistry and Molecular Biology, Vrije Universiteit, Amsterdam, The Netherlands.
Griffioen G
Zerp S
Groeneveld P
Thevelein J M
Mager W H
Planta R J
References (51)
51 references, click to expand
  1. An ARS/silencer binding factor also activates two ribosomal protein genes in yeast.
    Nucleic Acids Res. 1989 Jul 11;17(13):4917-23 PMID: 2668873
  2. Analysis of single- and double-stranded nucleic acids on polyacrylamide and agarose gels by using glyoxal and acridine orange.
    Proc Natl Acad Sci U S A. 1977 Nov;74(11):4835-8 PMID: 73185
  3. Purification and cloning of a DNA binding protein from yeast that binds to both silencer and activator elements.
    Cell. 1987 Dec 4;51(5):721-32 PMID: 3315231
  4. A yeast homologue of the bovine lens fibre MIP gene family complements the growth defect of a Saccharomyces cerevisiae mutant on fermentable sugars but not its defect in glucose-induced RAS-mediated cAMP signalling.
    EMBO J. 1991 Aug;10(8):2095-104 PMID: 1648479
  5. The ABF1 factor is the transcriptional activator of the L2 ribosomal protein genes in Saccharomyces cerevisiae.
    Mol Cell Biol. 1990 May;10(5):2437-41 PMID: 2183035
  6. Multifunctional DNA-binding proteins mediate concerted transcription activation of yeast ribosomal protein genes.
    Biochim Biophys Acta. 1990 Aug 27;1050(1-3):351-5 PMID: 2207166
  7. A general upstream binding factor for genes of the yeast translational apparatus.
    EMBO J. 1985 Dec 16;4(13A):3539-47 PMID: 3912170
  8. Independent genes coding for three acidic proteins of the large ribosomal subunit from Saccharomyces cerevisiae.
    J Biol Chem. 1988 Jul 5;263(19):9094-101 PMID: 2837476
  9. A cAMP-binding ectoprotein in the yeast Saccharomyces cerevisiae.
    Biochemistry. 1991 Oct 22;30(42):10181-90 PMID: 1657142
  10. Connections between transcriptional activators, silencers, and telomeres as revealed by functional analysis of a yeast DNA-binding protein.
    Mol Cell Biol. 1988 Dec;8(12):5086-99 PMID: 3072472
  11. Studies on glucose-induced inactivation of gluconeogenetic enzymes in adenylate cyclase and cAMP-dependent protein kinase yeast mutants.
    Eur J Biochem. 1984 Dec 17;145(3):543-8 PMID: 6096142
  12. Glucose-induced activation of plasma membrane H(+)-ATPase in mutants of the yeast Saccharomyces cerevisiae affected in cAMP metabolism, cAMP-dependent protein phosphorylation and the initiation of glycolysis.
    Biochim Biophys Acta. 1992 Jul 22;1136(1):57-67 PMID: 1322708
  13. Role of multifunctional autonomously replicating sequence binding factor 1 in the initiation of DNA replication and transcriptional control in Saccharomyces cerevisiae.
    Mol Cell Biol. 1992 Mar;12(3):1064-77 PMID: 1545789
  14. Efficient transcription of the glycolytic gene ADH1 and three translational component genes requires the GCR1 product, which can act through TUF/GRF/RAP binding sites.
    Mol Cell Biol. 1990 Feb;10(2):859-62 PMID: 2405258
  15. Characterisation of the DNA binding domain of the yeast RAP1 protein.
    Nucleic Acids Res. 1990 May 11;18(9):2617-23 PMID: 2187178
  16. Functional analysis of the promoter of the gene encoding the acidic ribosomal protein L45 in yeast.
    Biochim Biophys Acta. 1991 Oct 8;1090(2):204-10 PMID: 1932111
  17. The mechanism by which glucose increases fructose 2,6-bisphosphate concentration in Saccharomyces cerevisiae. A cyclic-AMP-dependent activation of phosphofructokinase 2.
    Eur J Biochem. 1984 Nov 15;145(1):187-93 PMID: 6092080
  18. Two lipid-anchored cAMP-binding proteins in the yeast Saccharomyces cerevisiae are unrelated to the R subunit of cytoplasmic protein kinase A.
    Eur J Biochem. 1991 Dec 5;202(2):299-308 PMID: 1722148
  19. Fermentable sugars and intracellular acidification as specific activators of the RAS-adenylate cyclase signalling pathway in yeast: the relationship to nutrient-induced cell cycle control.
    Mol Microbiol. 1991 Jun;5(6):1301-7 PMID: 1664904
  20. The C-terminal part of the CDC25 gene product plays a key role in signal transduction in the glucose-induced modulation of cAMP level in Saccharomyces cerevisiae.
    Eur J Biochem. 1990 Nov 13;193(3):675-80 PMID: 2174363
  21. Studies on the mechanism of the glucose-induced cAMP signal in glycolysis and glucose repression mutants of the yeast Saccharomyces cerevisiae.
    Eur J Biochem. 1988 Feb 15;172(1):227-31 PMID: 2831059
  22. Kluyveromyces contains a functional ABF1-homologue.
    Nucleic Acids Res. 1992 May 11;20(9):2211-5 PMID: 1594441
  23. Sequence, expression and mutational analysis of BAF1, a transcriptional activator and ARS1-binding protein of the yeast Saccharomyces cerevisiae.
    EMBO J. 1989 Dec 20;8(13):4265-72 PMID: 2686983
  24. Two DNA-binding factors recognize specific sequences at silencers, upstream activating sequences, autonomously replicating sequences, and telomeres in Saccharomyces cerevisiae.
    Mol Cell Biol. 1988 Jan;8(1):210-25 PMID: 3275867
  25. The multifunctional protein OBF1 is phosphorylated at serine and threonine residues in Saccharomyces cerevisiae.
    Proc Natl Acad Sci U S A. 1991 May 15;88(10):4089-93 PMID: 2034654
  26. RAS genes in Saccharomyces cerevisiae: signal transduction in search of a pathway.
    Trends Genet. 1991 Jan;7(1):28-33 PMID: 1848378
  27. Constitutive transcription of yeast ribosomal protein gene TCM1 is promoted by uncommon cis- and trans-acting elements.
    Mol Cell Biol. 1988 Oct;8(10):4328-41 PMID: 3054514
  28. Dissection of a carboxy-terminal region of the yeast regulatory protein RAP1 with effects on both transcriptional activation and silencing.
    Mol Cell Biol. 1992 Mar;12(3):1209-17 PMID: 1545802
  29. Purification and characterization of proteins that bind to yeast ARSs.
    J Biol Chem. 1988 Nov 25;263(33):17270-7 PMID: 3053706
  30. Further evidence that the rna2 mutation of Saccharomyces cerevisiae affects mRNA processing.
    Mol Cell Biol. 1982 Oct;2(10):1205-11 PMID: 6757717
  31. ARS binding factor 1 binds adjacent to RAP1 at the UASs of the yeast glycolytic genes PGK and PYK1.
    Nucleic Acids Res. 1990 Sep 25;18(18):5393-9 PMID: 2120676
  32. Tripartite upstream promoter element essential for expression of Saccharomyces cerevisiae ribosomal protein genes.
    Mol Cell Biol. 1986 Feb;6(2):674-87 PMID: 3023862
  33. A yeast silencer contains sequences that can promote autonomous plasmid replication and transcriptional activation.
    Cell. 1987 Dec 4;51(5):709-19 PMID: 3315230
  34. Yeast cdc35 mutants are defective in adenylate cyclase and are allelic with cyr1 mutants while CAS1, a new gene, is involved in the regulation of adenylate cyclase.
    EMBO J. 1985 Oct;4(10):2635-41 PMID: 2996883
  35. The gene encoding ARS-binding factor I is essential for the viability of yeast.
    Genes Dev. 1989 Dec;3(12A):1926-39 PMID: 2620828
  36. Identification of a telomere-binding activity from yeast.
    Proc Natl Acad Sci U S A. 1986 Jun;83(11):3713-7 PMID: 3520552
  37. Conserved sequences upstream of yeast ribosomal protein genes.
    Curr Genet. 1985;9(4):273-7 PMID: 3916723
  38. Analysis of upstream activation sites of yeast ribosomal protein genes.
    Nucleic Acids Res. 1987 Aug 11;15(15):6037-48 PMID: 3627978
  39. Coordinate expression of ribosomal protein genes in yeast as a function of cellular growth rate.
    Mol Cell Biochem. 1991 May 29-Jun 12;104(1-2):181-7 PMID: 1921998
  40. A rapid and sensitive method for the quantitation of microgram quantities of protein utilizing the principle of protein-dye binding.
    Anal Biochem. 1976 May 7;72:248-54 PMID: 942051
  41. Structural comparison of yeast ribosomal protein genes.
    Nucleic Acids Res. 1984 Sep 11;12(17):6685-700 PMID: 6091033
  42. Transcriptional control of the Saccharomyces cerevisiae PGK gene by RAP1.
    Mol Cell Biol. 1989 Dec;9(12):5516-24 PMID: 2685568
  43. Phosphorylation influences the binding of the yeast RAP1 protein to the upstream activating sequence of the PGK gene.
    Nucleic Acids Res. 1990 Dec 25;18(24):7331-7 PMID: 2175432
  44. Yeast ribosomal protein S33 is encoded by an unsplit gene.
    Nucleic Acids Res. 1983 Nov 25;11(22):7759-68 PMID: 6196722
  45. RAP-1 factor is necessary for DNA loop formation in vitro at the silent mating type locus HML.
    Cell. 1989 Jun 2;57(5):725-37 PMID: 2655930
  46. Conserved sequence elements upstream of the gene encoding yeast ribosomal protein L25 are involved in transcription activation.
    EMBO J. 1986 May;5(5):1037-40 PMID: 3013611
  47. Structure of a split yeast gene: complete nucleotide sequence of the actin gene in Saccharomyces cerevisiae.
    Proc Natl Acad Sci U S A. 1980 May;77(5):2546-50 PMID: 6994099
  48. Requirement of one functional RAS gene and inability of an oncogenic ras variant to mediate the glucose-induced cyclic AMP signal in the yeast Saccharomyces cerevisiae.
    Mol Cell Biol. 1988 Aug;8(8):3051-7 PMID: 2850478
  49. Involvement of the CDC25 gene product in the signal transmission pathway of the glucose-induced RAS-mediated cAMP signal in the yeast Saccharomyces cerevisiae.
    J Gen Microbiol. 1991 Feb;137(2):341-9 PMID: 1849965
  50. Similarity between the transcriptional silencer binding proteins ABF1 and RAP1.
    Science. 1989 Nov 24;246(4933):1034-8 PMID: 2511628
  51. Multifunctional DNA-binding proteins in yeast.
    Gene Expr. 1992;2(3):193-201 PMID: 1450661
Article Info
Journal
Molecular & general genetics : MGG
Abbr.
Mol Gen Genet
ISSN
0026-8925
Published
1993-05-00
Pages
196-204
Language
English
Region
Germany
NLM ID
0125036
Subset
IM
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