Home LiteratureArticle Details
PMID: 8052665 Published · ppublish English Journal Article

Contacts of the globular domain of histone H5 and core histones with DNA in a "chromatosome".

Hayes JJ, Pruss D, Wolffe AP

Abstract

The globular domain of histone H5 is found to asymmetrically associate with a nucleosome core including the Xenopus borealis somatic 5S RNA gene. Histones H2A and H2B are required for association of histone H5. Strong crosslinking of the globular domain of histone H5 to the 5S DNA in the nucleosome occurs at a single site to one side of the dyad axis. This site is also in contact with the core histones, and the interactions of the core histones with 5S DNA change as a result of association of the globular domain of histone H5. We discuss evidence for an allosteric change in core histone-5S DNA interactions following the association of the linker histone in the nucleosome.

MeSH Terms
Animals Cross-Linking Reagents DNA, Ribosomal/chemistry Histones/chemistry Models, Structural Molecular Conformation Nucleosomes/chemistry RNA, Ribosomal, 5S/genetics Xenopus
Chemicals
Cross-Linking Reagents DNA, Ribosomal Histones Nucleosomes RNA, Ribosomal, 5S
Authors & Affiliations
3 authors, click to expand affiliations / ORCID
Hayes J J
Laboratory of Molecular Embryology, National Institute of Child Health and Human Development, National Institutes of Health, Bethesda, MD 20892.
Pruss D
Wolffe A P
References (36)
36 references, click to expand
  1. The organization of histones and DNA in chromatin: evidence for an arginine-rich histone kernel.
    Cell. 1976 Jul;8(3):333-47 PMID: 986252
  2. Reconstitution of chromatin core particles.
    Biochemistry. 1977 Nov 29;16(24):5295-303 PMID: 921932
  3. The structure of DNA in a nucleosome.
    Proc Natl Acad Sci U S A. 1990 Oct;87(19):7405-9 PMID: 2170977
  4. Chromatosome positioning on assembled long chromatin. Linker histones affect nucleosome placement on 5 S rDNA.
    J Mol Biol. 1991 Jul 5;220(1):89-100 PMID: 2067021
  5. Histone contributions to the structure of DNA in the nucleosome.
    Proc Natl Acad Sci U S A. 1991 Aug 1;88(15):6829-33 PMID: 1650485
  6. Neutron scattering studies of chromatosomes.
    Biochem Biophys Res Commun. 1991 Sep 16;179(2):810-6 PMID: 1898404
  7. Nucleosome positioning is determined by the (H3-H4)2 tetramer.
    Proc Natl Acad Sci U S A. 1991 Dec 1;88(23):10596-600 PMID: 1961726
  8. [Structure of nucleosomes. Localization of the H2A and H2B histone segments interacting with DNA using DNA-protein crosslinking].
    Mol Biol (Mosk). 1991 Sep-Oct;25(5):1400-11 PMID: 1753964
  9. Chromosomal organization of Xenopus laevis oocyte and somatic 5S rRNA genes in vivo.
    Mol Cell Biol. 1992 Jan;12(1):45-55 PMID: 1729615
  10. Chemical cross-linking of histones.
    Methods Enzymol. 1989;170:549-71 PMID: 2770550
  11. Chromatin superstructure-dependent crosslinking with DNA of the histone H5 residues Thr1, His25 and His62.
    J Mol Biol. 1990 Jan 20;211(2):479-91 PMID: 2106584
  12. Structure of nucleosomes and organization of internucleosomal DNA in chromatin.
    J Mol Biol. 1990 Apr 5;212(3):495-511 PMID: 2325131
  13. DNA and protein determinants of nucleosome positioning on sea urchin 5S rRNA gene sequences in vitro.
    Proc Natl Acad Sci U S A. 1990 Aug;87(15):5724-8 PMID: 2377610
  14. Co-operative binding of the globular domain of histone H5 to DNA.
    J Mol Biol. 1992 Jun 20;225(4):1105-21 PMID: 1613793
  15. Mobile nucleosomes--a general behavior.
    EMBO J. 1992 Aug;11(8):2951-9 PMID: 1639066
  16. Structure of DNA in a nucleosome core at high salt concentration and at high temperature.
    Biochemistry. 1993 Mar 2;32(8):1895-8 PMID: 8383529
  17. Crystal structure of globular domain of histone H5 and its implications for nucleosome binding.
    Nature. 1993 Mar 18;362(6417):219-23 PMID: 8384699
  18. Co-crystal structure of the HNF-3/fork head DNA-recognition motif resembles histone H5.
    Nature. 1993 Jul 29;364(6436):412-20 PMID: 8332212
  19. Histone-DNA contacts in a nucleosome core containing a Xenopus 5S rRNA gene.
    Biochemistry. 1993 Jul 13;32(27):6810-4 PMID: 8334114
  20. Preferential and asymmetric interaction of linker histones with 5S DNA in the nucleosome.
    Proc Natl Acad Sci U S A. 1993 Jul 15;90(14):6415-9 PMID: 8341648
  21. Asymmetry of chromatin subunits probed with histone H1 in an H1-DNA complex.
    Biochemistry. 1978 May 16;17(10):1880-3 PMID: 656367
  22. Structure of the chromatosome, a chromatin particle containing 160 base pairs of DNA and all the histones.
    Biochemistry. 1978 Dec 12;17(25):5524-31 PMID: 728412
  23. A new procedure for purifying histone pairs H2A + H2B and H3 + H4 from chromatin using hydroxylapatite.
    Nucleic Acids Res. 1979 Feb;6(2):689-96 PMID: 424310
  24. Reassociation of histone H1 with nucleosomes.
    J Biol Chem. 1979 Nov 25;254(22):11751-60 PMID: 500671
  25. Points of contact between histone H1 and the histone octamer.
    Proc Natl Acad Sci U S A. 1980 Jan;77(1):127-31 PMID: 6928607
  26. Characterization of two xenopus somatic 5S DNAs and one minor oocyte-specific 5S DNA.
    Cell. 1980 May;20(1):131-41 PMID: 6248230
  27. Primary organization of nucleosomes containing all five histones and DNA 175 and 165 base-pairs long.
    J Mol Biol. 1980 May 25;139(3):519-36 PMID: 7441743
  28. The structure of histone H1 and its location in chromatin.
    Nature. 1980 Dec 25;288(5792):675-9 PMID: 7453800
  29. One-domain interaction of histone H4 with nucleosomal core DNA is restricted to a narrow DNA segment.
    FEBS Lett. 1986 Jan 1;194(1):69-72 PMID: 3940891
  30. Histone hyperacetylation: its effects on nucleosome conformation and stability.
    Biochemistry. 1986 Mar 25;25(6):1421-8 PMID: 3964683
  31. Salt-dependent co-operative interaction of histone H1 with linear DNA.
    J Mol Biol. 1986 Feb 20;187(4):569-80 PMID: 3712436
  32. A highly basic histone H4 domain bound to the sharply bent region of nucleosomal DNA.
    Nature. 1988 Jan 28;331(6154):365-7 PMID: 3340182
  33. Transcription fraction TFIIIC can regulate differential Xenopus 5S RNA gene transcription in vitro.
    EMBO J. 1988 Apr;7(4):1071-9 PMID: 3402432
  34. Footprinting of linker histones H5 and H1 on the nucleosome.
    EMBO J. 1988 Dec 1;7(12):3685-91 PMID: 3208745
  35. Use of selectively trypsinized nucleosome core particles to analyze the role of the histone "tails" in the stabilization of the nucleosome.
    J Mol Biol. 1989 Apr 5;206(3):451-63 PMID: 2716057
  36. Mapping DNA-protein interactions by cross-linking.
    Methods Enzymol. 1989;170:386-408 PMID: 2770546
Article Info
Journal
Proceedings of the National Academy of Sciences of the United States of America
Abbr.
Proc Natl Acad Sci U S A
ISSN
0027-8424
Published
1994-08-02
Pages
7817-21
Language
English
Region
United States
NLM ID
7505876
PMCID
PMC44493
Subset
IM
Analysis Services
Analysis Services

Contact

No. 2 Wenbo Road, Zhangqiu District, Jinan, Shandong

Qilu Normal University · Genelibs Bioinformatics Lab

750 Shunhua Rd, Jinan

2F, Bldg F, University Science Park

Tel: 0531-88819269

WeChat Official Account

Follow our WeChat subscription account for real-time updates and the latest in medical and biological research.


Business Email

E-mail: product@genelibs.com