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PMID: 7003547 Published · ppublish English Journal Article Research Support, U.S. Gov't, Non-P.H.S.

Transfer RNA genes in the cap-oxil region of yeast mitochondrial DNA.

Nucleic acids research ·Vol. 8 ·No. 21 ·1980-11-11 ·Pages 5017-30

Berlani RE, Bonitz SG, Coruzzi G, Nobrega M, Tzagoloff A

Abstract

A cytoplasmic "petite" (rho-) clone of Saccharomyces cerevisiae has been isolated and found through DNA sequencing to contain the genes for cysteine, histidine, leucine, glutamine, lysine, arginine, and glycine tRNAs. This clone, designated DS502, has a tandemly repeated 3.5 kb segment of the wild type genome from 0.7 to 5.6 units. All the tRNA genes are transcribed from the same strand of DNA in the direction cap to oxil. The mitochondrial DNA segment of DS502 fills a sequence gap that existed between the histidine and lysine tRNAs. The new sequence data has made it possible to assign accurate map positions to all the tRNA genes in the cap-oxil span of the yeast mitochondrial genome. A detailed restriction map of the region from 0 to 17 map units along with the locations of 16 tRNA genes have been determined. The secondary structures of the leucine and glutamine tRNAs have been deduced from their gene sequences. The leucine tRNA exhibits 64% sequence homology to an E. coli leucine tRNA.

MeSH Terms
Base Sequence Chromosome Mapping DNA, Fungal/genetics DNA, Mitochondrial/genetics Genes Mutation Nucleic Acid Conformation RNA, Fungal/genetics RNA, Transfer/genetics Saccharomyces cerevisiae/genetics
Chemicals
DNA, Fungal DNA, Mitochondrial RNA, Fungal RNA, Transfer
Authors & Affiliations
5 authors, click to expand affiliations / ORCID
Berlani R E
Bonitz S G
Coruzzi G
Nobrega M
Tzagoloff A
References (36)
36 references, click to expand
  1. Molecular weight estimation and separation of ribonucleic acid by electrophoresis in agarose-acrylamide composite gels.
    Biochemistry. 1968 Feb;7(2):668-74 PMID: 4868544
  2. The nucleotide sequence of two leucine tRNA species from Escherichia coli K12.
    Biochem Biophys Res Commun. 1971 Jun 4;43(5):1192-7 PMID: 4936129
  3. The corrected nucleotide sequence of yeast leucine transfer ribonucleic acid.
    Biochem Biophys Res Commun. 1973 Apr 16;51(4):951-5 PMID: 4574158
  4. Transfer RNA genes in mitochondrial DNA of grande (wild-type) yeast.
    J Mol Biol. 1974 Oct 5;88(4):735-47 PMID: 4372363
  5. Physical and genetic organization of petite and grande yeast mitochondrial DNA. IV. In vivo transcription products of mitochondrial DNA and localization of 23 S ribosomal RNA in petite mutants of saccharomyces cerevisiae.
    J Mol Biol. 1974 Sep 5;88(1):185-203 PMID: 4613841
  6. Structural analysis of nonradioactive RNA by postlabeling: the primary structure of baker's yeast tRNA Leu/CUA.
    Biochem Biophys Res Commun. 1975 Mar 3;63(1):157-63 PMID: 164854
  7. Assembly of the mitochondrial membrane system. Cytoplasmic mutants of Saccharomyces cerevisiae with lesions in enzymes of the respiratory chain and in the mitochondrial ATPase.
    J Biol Chem. 1975 Oct 25;250(20):8236-42 PMID: 171256
  8. Phage lambda receptor chromosomes for DNA fragments made with restriction endonuclease III of Haemophilus influenzae and restriction endonuclease I of Escherichia coli.
    J Mol Biol. 1975 Nov 5;98(3):551-64 PMID: 1104875
  9. Localization in yeast mitochondrial DNA of mutations expressed in a deficiency of cytochrome oxidase and/or coenzyme QH2-cytochrome c reductase.
    Eur J Biochem. 1976 Jan 2;61(1):27-41 PMID: 173553
  10. The organization of genes in yeast mitochondrial DNA II. The physical map of EcoRI and HindII + III fragments.
    Mol Gen Genet. 1975 Dec 30;143(1):53-64 PMID: 765743
  11. Assembly of the mitochondrial membrane system XVI. Modified form of the ATPase proteolipid in oligomycin-resistant mutants of Saccharomyces cerevisiae.
    FEBS Lett. 1976 Jun 15;65(3):391-5 PMID: 133820
  12. The mitochondrial genome of wild-type yeast cells. VI. Genome organization.
    J Mol Biol. 1977 Feb 15;110(1):53-74 PMID: 845947
  13. A new method for sequencing DNA.
    Proc Natl Acad Sci U S A. 1977 Feb;74(2):560-4 PMID: 265521
  14. Three-dimensional tertiary structure of yeast phenylalanine transfer RNA.
    Science. 1974 Aug 2;185(4149):435-40 PMID: 4601792
  15. Nucleotide sequence of bacteriophage phi X174 DNA.
    Nature. 1977 Feb 24;265(5596):687-95 PMID: 870828
  16. Fine structure physical mapping of 4S RNA genes on mitochondrial DNA of Saccharomyces cerevisiae.
    Mol Gen Genet. 1977 Sep 9;154(3):255-62 PMID: 337105
  17. Study of yeast mitochondrial tRNAs by two-dimensional polyacrylamide gel electrophoresis: characterization of isoaccepting species and search for imported cytoplasmic tRNAs.
    Nucleic Acids Res. 1977 Oct;4(10):3497-510 PMID: 337238
  18. The mapping of mutations in tRNA and cytochrome oxidase genes located in the cap-par segment of the mitochondrial genome of S. cerevisiae.
    Mol Gen Genet. 1977 Dec 14;158(1):35-45 PMID: 203841
  19. Mitochondrial transfer RNAs in yeast: identification of isoaccepting transfer RNAs.
    Biochemistry. 1978 May 2;17(9):1628-34 PMID: 350272
  20. Mapping of mitochondrial 4 S RNA genes in Xenopus laevis by electron microscopy.
    J Mol Biol. 1978 May 25;121(3):299-310 PMID: 671539
  21. Sequence homologies of (guanosine + cytidine)-rich regions of mitochondrial DNA of Saccharomyces cerevisiae.
    J Biol Chem. 1979 Jan 10;254(1):42-3 PMID: 363718
  22. Primary structure of yeast mitochondrial DNA-coded phenylalanine-tRNA.
    Nucleic Acids Res. 1978 Dec;5(12):4579-92 PMID: 370774
  23. Site specific endonuclease from Fusobacterium nucleatum.
    Nucleic Acids Res. 1979 Jan;6(1):1-15 PMID: 424284
  24. Assembly of the mitochondrial membrane system: two separate genes coding for threonyl-tRNA in the mitochondrial DNA of Saccharomyces cerevisiae.
    Mol Gen Genet. 1979 Jan 31;169(2):183-8 PMID: 375006
  25. Physical mapping of the yeast mitochondrial genome: derivation of the fine structure and gene map of strain D273-10B and comparison with a strain (MH41-7B) differing in genome size.
    Mol Gen Genet. 1979 Feb 16;170(1):25-48 PMID: 375015
  26. The genetic map of transfer RNA genes of yeast mitochondria: correction and extension.
    Mol Gen Genet. 1979 Mar 5;170(3):261-75 PMID: 379543
  27. Assembly of the mitochondrial membrane system. DNA sequence of subunit 2 of yeast cytochrome oxidase.
    J Biol Chem. 1979 Sep 25;254(18):9324-30 PMID: 225327
  28. Nucleotide sequence of the mitochondrial structural genes for cysteine-tRNA and histidine-tRNA of yeast.
    Nucleic Acids Res. 1979 Jul 25;6(10):3255-66 PMID: 384365
  29. The nucleotide sequence of yeast mitochondrial histidine-tRNA.
    FEBS Lett. 1979 Nov 1;107(1):182-6 PMID: 115719
  30. Sequence analysis of two yeast mitochondrial DNA fragments containing the genes for tRNA Ser UCR and tRNA Phe UUY.
    J Biol Chem. 1979 Nov 25;254(22):11735-40 PMID: 387778
  31. Two isoaccepting seryl tRNAs coded by separate mitochondrial genes in yeast.
    Mol Gen Genet. 1979 Aug;175(1):1-4 PMID: 390301
  32. Five TGA "stop" codons occur within the translated sequence of the yeast mitochondrial gene for cytochrome c oxidase subunit II.
    Proc Natl Acad Sci U S A. 1979 Dec;76(12):6534-8 PMID: 230513
  33. The tRNAAGYSer and tRNACGYArg genes from a gene cluster in yeast mitochondrial DNA.
    Cell. 1980 Feb;19(2):339-43 PMID: 6244104
  34. Assembly of the mitochondrial membrane system: isolation of mitochondrial transfer ribonucleic acid mutants and characterization of transfer ribonucleic acid genes of Saccharomyces cerevisiae.
    J Bacteriol. 1980 Mar;141(3):1086-97 PMID: 6245059
  35. [Primary structure of yeast mitochondrial tryptophan-tRNA capable of translating the termination U-G-A codon].
    C R Seances Acad Sci D. 1980 Mar 17;290(11):695-8 PMID: 6769601
  36. Sequence of the intron and flanking exons of the mitochondrial 21S rRNA gene of yeast strains having different alleles at the omega and rib-1 loci.
    Cell. 1980 May;20(1):185-97 PMID: 6156002
Article Info
Journal
Nucleic acids research
Abbr.
Nucleic Acids Res
ISSN
0305-1048
Published
1980-11-11
Pages
5017-30
Language
English
Region
England
NLM ID
0411011
PMCID
PMC324276
Subset
IM
Databases
GENBANK
K00538, K00539, L00011, L00012, V00693
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