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PMID: 3034856 Published · ppublish English Comparative Study Journal Article Research Support, Non-U.S. Gov't

Rhizobium meliloti ntrA (rpoN) gene is required for diverse metabolic functions.

Journal of bacteriology ·Vol. 169 ·No. 6 ·1987-06-00 ·Pages 2424-31

Ronson CW, Nixon BT, Albright LM, Ausubel FM

Abstract

We report the identification and cloning of an ntrA-like (glnF rpoN) gene of Rhizobium meliloti and show that the R. meliloti ntrA product (NtrA) is required for C4-dicarboxylate transport as well as for nitrate assimilation and symbiotic nitrogen fixation. DNA sequence analysis showed that R. meliloti NtrA is 38% homologous with Klebsiella pneumoniae NtrA. Subcloning and complementation analysis suggested that the R. meliloti ntrA promoter lies within 125 base pairs of the initiation codon and may be constitutively expressed.

MeSH Terms
Amino Acid Sequence Base Sequence Biological Transport Chromosome Mapping Cloning, Molecular DNA Transposable Elements DNA-Directed RNA Polymerases/physiology Dicarboxylic Acids/metabolism Gene Expression Regulation Genes, Bacterial Genetic Complementation Test Mutation Nitrogen/metabolism Phenotype Promoter Regions, Genetic Rhizobium/genetics Sigma Factor/genetics Transcription Factors/genetics
Chemicals
DNA Transposable Elements Dicarboxylic Acids Sigma Factor Transcription Factors DNA-Directed RNA Polymerases Nitrogen
Authors & Affiliations
4 authors, click to expand affiliations / ORCID
Ronson C W
Nixon B T
Albright L M
Ausubel F M
References (39)
39 references, click to expand
  1. Nucleotide sequence and transcriptional initiation site of two Pseudomonas aeruginosa pilin genes.
    J Biol Chem. 1986 Nov 25;261(33):15703-8 PMID: 2430961
  2. Sequence and domain relationships of ntrC and nifA from Klebsiella pneumoniae: homologies to other regulatory proteins.
    EMBO J. 1986 Feb;5(2):441-7 PMID: 3011408
  3. Studies on the regulation and function of the Klebsiella pneumoniae ntrA gene.
    Gene. 1985;35(3):297-303 PMID: 3899862
  4. Broad host range DNA cloning system for gram-negative bacteria: construction of a gene bank of Rhizobium meliloti.
    Proc Natl Acad Sci U S A. 1980 Dec;77(12):7347-51 PMID: 7012838
  5. Structural relationships among Rhizobium meliloti symbiotic promoters.
    Cell. 1983 Dec;35(2 Pt 1):479-85 PMID: 6317191
  6. Two-component regulatory systems responsive to environmental stimuli share strongly conserved domains with the nitrogen assimilation regulatory genes ntrB and ntrC.
    Proc Natl Acad Sci U S A. 1986 Oct;83(20):7850-4 PMID: 3020561
  7. glnF-lacZ fusions in Escherichia coli: studies on glnF expression and its chromosomal orientation.
    Mol Gen Genet. 1984;195(1-2):228-33 PMID: 6149448
  8. Construction of a broad host range cosmid cloning vector and its use in the genetic analysis of Rhizobium mutants.
    Gene. 1982 Jun;18(3):289-96 PMID: 6290332
  9. Nucleotide sequence surrounding transcription initiation site of xylABC operon on TOL plasmid of Pseudomonas putida.
    Proc Natl Acad Sci U S A. 1984 Mar;81(6):1688-91 PMID: 6324212
  10. Automation of the computer handling of gel reading data produced by the shotgun method of DNA sequencing.
    Nucleic Acids Res. 1982 Aug 11;10(15):4731-51 PMID: 7133997
  11. The xylABC promoter from the Pseudomonas putida TOL plasmid is activated by nitrogen regulatory genes in Escherichia coli.
    Mol Gen Genet. 1986 Apr;203(1):129-36 PMID: 3520241
  12. The product of a newly identified gene, gInF, is required for synthesis of glutamine synthetase in Salmonella.
    Proc Natl Acad Sci U S A. 1977 Apr;74(4):1662-6 PMID: 16262
  13. Identification and characterization of the Rhizobium meliloti ntrC gene: R. meliloti has separate regulatory pathways for activation of nitrogen fixation genes in free-living and symbiotic cells.
    J Bacteriol. 1987 Apr;169(4):1423-32 PMID: 2881918
  14. A rapid boiling method for the preparation of bacterial plasmids.
    Anal Biochem. 1981 Jun;114(1):193-7 PMID: 6269464
  15. A technique for radiolabeling DNA restriction endonuclease fragments to high specific activity.
    Anal Biochem. 1983 Jul 1;132(1):6-13 PMID: 6312838
  16. "Nonrandom" DNA sequence analysis in bacteriophage M13 by the dideoxy chain-termination method.
    Proc Natl Acad Sci U S A. 1982 Jul;79(14):4298-302 PMID: 6956859
  17. The pUC plasmids, an M13mp7-derived system for insertion mutagenesis and sequencing with synthetic universal primers.
    Gene. 1982 Oct;19(3):259-68 PMID: 6295879
  18. Role of glnB and glnD gene products in regulation of the glnALG operon of Escherichia coli.
    J Bacteriol. 1985 Nov;164(2):816-22 PMID: 2865248
  19. Nitrogen fixation specific regulatory genes of Klebsiella pneumoniae and Rhizobium meliloti share homology with the general nitrogen regulatory gene ntrC of K. pneumoniae.
    Nucleic Acids Res. 1985 Jun 25;13(12):4539-55 PMID: 2989799
  20. Covalent modification of the glnG product, NRI, by the glnL product, NRII, regulates the transcription of the glnALG operon in Escherichia coli.
    Proc Natl Acad Sci U S A. 1986 Aug;83(16):5909-13 PMID: 2874557
  21. A comprehensive set of sequence analysis programs for the VAX.
    Nucleic Acids Res. 1984 Jan 11;12(1 Pt 1):387-95 PMID: 6546423
  22. Identification of the promoter of the Pseudomonas gene coding for carboxypeptidase G2.
    J Mol Appl Genet. 1985;3(1):26-35 PMID: 3839252
  23. Genetic control of nitrogen assimilation in bacteria.
    Annu Rev Genet. 1982;16:135-68 PMID: 6130743
  24. The nucleotide sequence of the nitrogen-regulation gene ntrA of Klebsiella pneumoniae and comparison with conserved features in bacterial RNA polymerase sigma factors.
    Nucleic Acids Res. 1985 Nov 11;13(21):7607-20 PMID: 2999700
  25. Regulation of nitrogen fixation genes.
    Annu Rev Genet. 1986;20:567-91 PMID: 3545064
  26. Omega mutagenesis in gram-negative bacteria: a selectable interposon which is strongly polar in a wide range of bacterial species.
    Gene. 1985;36(1-2):143-50 PMID: 2998930
  27. Molecular cloning and genetic organization of C4-dicarboxylate transport genes from Rhizobium leguminosarum.
    J Bacteriol. 1984 Dec;160(3):903-9 PMID: 6094513
  28. Extension of the host range of Escherichia coli vectors by incorporation of RSF1010 replication and mobilization functions.
    J Bacteriol. 1985 Jul;163(1):324-30 PMID: 3891734
  29. A Rhizobium meliloti symbiotic regulatory gene.
    Cell. 1984 Apr;36(4):1035-43 PMID: 6423287
  30. DNA sequence of Rhizobium trifolii nodulation genes reveals a reiterated and potentially regulatory sequence preceding nodABC and nodFE.
    Nucleic Acids Res. 1986 Apr 11;14(7):2891-903 PMID: 3008100
  31. The products of glnL and glnG are bifunctional regulatory proteins.
    Mol Gen Genet. 1982;188(2):325-33 PMID: 6130464
  32. In vitro insertional mutagenesis with a selectable DNA fragment.
    Gene. 1984 Sep;29(3):303-13 PMID: 6237955
  33. Improved M13 phage cloning vectors and host strains: nucleotide sequences of the M13mp18 and pUC19 vectors.
    Gene. 1985;33(1):103-19 PMID: 2985470
  34. Klebsiella pneumoniae nifA product activates the Rhizobium meliloti nitrogenase promoter.
    Nature. 1983 Feb 24;301(5902):728-32 PMID: 6338395
  35. Establishing homologies in protein sequences.
    Methods Enzymol. 1983;91:524-45 PMID: 6855599
  36. Physical and genetic characterization of symbiotic and auxotrophic mutants of Rhizobium meliloti induced by transposon Tn5 mutagenesis.
    J Bacteriol. 1982 Jan;149(1):114-22 PMID: 6274841
  37. Transcription of glnA by purified Escherichia coli components: core RNA polymerase and the products of glnF, glnG, and glnL.
    Proc Natl Acad Sci U S A. 1985 Dec;82(24):8453-7 PMID: 2867543
  38. Products of nitrogen regulatory genes ntrA and ntrC of enteric bacteria activate glnA transcription in vitro: evidence that the ntrA product is a sigma factor.
    Proc Natl Acad Sci U S A. 1985 Nov;82(22):7525-9 PMID: 2999766
  39. C(4)-dicarboxylate transport mutants of Rhizobium trifolii form ineffective nodules on Trifolium repens.
    Proc Natl Acad Sci U S A. 1981 Jul;78(7):4284-8 PMID: 16593058
Article Info
Journal
Journal of bacteriology
Abbr.
J Bacteriol
ISSN
0021-9193
Published
1987-06-00
Pages
2424-31
Language
English
Region
United States
NLM ID
2985120R
PMCID
PMC212082
Subset
IM
Databases
GENBANK
M16513
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