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PMID: 22045923 Published · ppublish English Journal Article Research Support, Non-U.S. Gov't Research Support, U.S. Gov't, Non-P.H.S. Review

Localization and dynamics of nuclear speckles in plants.

Plant physiology ·Vol. 158 ·No. 1 ·2012-01-00 ·Pages 67-77

Reddy AS, Day IS, Göhring J, Barta A

Abstract

暂无摘要

MeSH Terms
Molecular Biology/methods Plants/genetics RNA Splicing RNA, Messenger/metabolism RNA-Binding Proteins/genetics,metabolism Ribonucleoproteins, Small Nuclear/genetics,metabolism
Chemicals
RNA, Messenger RNA-Binding Proteins Ribonucleoproteins, Small Nuclear
Authors & Affiliations
4 authors, click to expand affiliations / ORCID
Reddy Anireddy S N
Department of Biology, Program in Molecular Plant Biology, Program in Cell and Molecular Biology, Colorado State University, Fort Collins, Colorado 80523, USA. reddy@colostate.edu
Day Irene S
Göhring Janett
Barta Andrea
References (82)
82 references, click to expand
  1. Nuclear localization and in vivo dynamics of a plant-specific serine/arginine-rich protein.
    Plant J. 2003 Dec;36(6):883-93 PMID: 14675452
  2. The SR protein family of splicing factors: master regulators of gene expression.
    Biochem J. 2009 Jan 1;417(1):15-27 PMID: 19061484
  3. Functional architecture in the cell nucleus.
    Biochem J. 2001 Jun 1;356(Pt 2):297-310 PMID: 11368755
  4. Function annotation of the rice transcriptome at single-nucleotide resolution by RNA-seq.
    Genome Res. 2010 Sep;20(9):1238-49 PMID: 20627892
  5. Genome-wide suppression of aberrant mRNA-like noncoding RNAs by NMD in Arabidopsis.
    Proc Natl Acad Sci U S A. 2009 Feb 17;106(7):2453-8 PMID: 19181858
  6. Involvement of the nuclear cap-binding protein complex in alternative splicing in Arabidopsis thaliana.
    Nucleic Acids Res. 2010 Jan;38(1):265-78 PMID: 19864257
  7. Transportin-SR is required for proper splicing of resistance genes and plant immunity.
    PLoS Genet. 2011 Jun;7(6):e1002159 PMID: 21738492
  8. Genome-wide mapping of alternative splicing in Arabidopsis thaliana.
    Genome Res. 2010 Jan;20(1):45-58 PMID: 19858364
  9. Analyses of in vivo interaction and mobility of two spliceosomal proteins using FRAP and BiFC.
    PLoS One. 2008 Apr 16;3(4):e1953 PMID: 18414657
  10. Molecular characterization of the spliceosomal proteins U1A and U2B" from higher plants.
    EMBO J. 1995 Sep 15;14(18):4540-50 PMID: 7556097
  11. Identification of mRNA splicing factors as the endothelial receptor for carbohydrate-dependent lung colonization of cancer cells.
    Proc Natl Acad Sci U S A. 2009 Mar 3;106(9):3095-100 PMID: 19218444
  12. Genome-wide analysis of alternative pre-mRNA splicing in Arabidopsis thaliana based on full-length cDNA sequences.
    Nucleic Acids Res. 2004 Sep 27;32(17):5096-103 PMID: 15452276
  13. High mobility of proteins in the mammalian cell nucleus.
    Nature. 2000 Apr 6;404(6778):604-9 PMID: 10766243
  14. Deep surveying of alternative splicing complexity in the human transcriptome by high-throughput sequencing.
    Nat Genet. 2008 Dec;40(12):1413-5 PMID: 18978789
  15. ATP, phosphorylation and transcription regulate the mobility of plant splicing factors.
    J Cell Sci. 2006 Sep 1;119(Pt 17):3527-38 PMID: 16895966
  16. UBP1, a novel hnRNP-like protein that functions at multiple steps of higher plant nuclear pre-mRNA maturation.
    EMBO J. 2000 Apr 3;19(7):1638-49 PMID: 10747031
  17. Molecular beacons: probes that fluoresce upon hybridization.
    Nat Biotechnol. 1996 Mar;14(3):303-8 PMID: 9630890
  18. Role of plant RNA-binding proteins in development, stress response and genome organization.
    Trends Plant Sci. 2009 Apr;14(4):229-36 PMID: 19285908
  19. Insights into nuclear organization in plants as revealed by the dynamic distribution of Arabidopsis SR splicing factors.
    Plant Cell. 2006 Nov;18(11):3218-34 PMID: 17114353
  20. Extensive coupling of alternative splicing of pre-mRNAs of serine/arginine (SR) genes with nonsense-mediated decay.
    New Phytol. 2010 Jan;185(1):83-9 PMID: 19863731
  21. Nuclear domains.
    J Cell Sci. 2001 Aug;114(Pt 16):2891-3 PMID: 11686292
  22. Transport of TMV movement protein particles associated with the targeting of RNA to plasmodesmata.
    Traffic. 2008 Dec;9(12):2073-88 PMID: 19281527
  23. Plant serine/arginine-rich proteins: roles in precursor messenger RNA splicing, plant development, and stress responses.
    Wiley Interdiscip Rev RNA. 2011 Nov-Dec;2(6):875-89 PMID: 21766458
  24. Selective trafficking of KNOTTED1 homeodomain protein and its mRNA through plasmodesmata.
    Science. 1995 Dec 22;270(5244):1980-3 PMID: 8533088
  25. Modulation of abscisic acid signal transduction and biosynthesis by an Sm-like protein in Arabidopsis.
    Dev Cell. 2001 Dec;1(6):771-81 PMID: 11740939
  26. Tissue-specific expression and dynamic organization of SR splicing factors in Arabidopsis.
    Mol Biol Cell. 2004 Jun;15(6):2664-73 PMID: 15034145
  27. Fluorescent proteins and their applications in imaging living cells and tissues.
    Physiol Rev. 2010 Jul;90(3):1103-63 PMID: 20664080
  28. Plant SR proteins and their functions.
    Curr Top Microbiol Immunol. 2008;326:83-102 PMID: 18630748
  29. Visualization of molecular interactions using bimolecular fluorescence complementation analysis: characteristics of protein fragment complementation.
    Chem Soc Rev. 2009 Oct;38(10):2876-86 PMID: 19771334
  30. Two alternatively spliced isoforms of the Arabidopsis SR45 protein have distinct roles during normal plant development.
    Plant Physiol. 2009 Jul;150(3):1450-8 PMID: 19403727
  31. A photoactivatable GFP for selective photolabeling of proteins and cells.
    Science. 2002 Sep 13;297(5588):1873-7 PMID: 12228718
  32. Polypyrimidine tract-binding protein homologues from Arabidopsis underlie regulatory circuits based on alternative splicing and downstream control.
    Plant J. 2010 Oct;64(2):243-55 PMID: 20735772
  33. Functional distribution and dynamics of Arabidopsis SR splicing factors in living plant cells.
    Plant J. 2005 Feb;41(4):567-82 PMID: 15686520
  34. Structure and expression of a plant U1 snRNP 70K gene: alternative splicing of U1 snRNP 70K pre-mRNAs produces two different transcripts.
    Plant Cell. 1996 Aug;8(8):1421-35 PMID: 8776903
  35. RNA processing and its regulation: global insights into biological networks.
    Nat Rev Genet. 2010 Jan;11(1):75-87 PMID: 20019688
  36. Implementing a rational and consistent nomenclature for serine/arginine-rich protein splicing factors (SR proteins) in plants.
    Plant Cell. 2010 Sep;22(9):2926-9 PMID: 20884799
  37. Evolutionary conservation of minor U12-type spliceosome between plants and humans.
    RNA. 2005 Jul;11(7):1095-107 PMID: 15987817
  38. Identification of nuclear dicing bodies containing proteins for microRNA biogenesis in living Arabidopsis plants.
    Curr Biol. 2007 May 1;17(9):818-23 PMID: 17442570
  39. Real-time observation of transcription initiation and elongation on an endogenous yeast gene.
    Science. 2011 Apr 22;332(6028):475-8 PMID: 21512033
  40. Elucidating anomalous protein diffusion in living cells with fluorescence correlation spectroscopy-facts and pitfalls.
    J Fluoresc. 2010 Jan;20(1):19-26 PMID: 19582558
  41. Nuclear speckles.
    Cold Spring Harb Perspect Biol. 2011 Feb 01;3(2): PMID: 20926517
  42. Reversible photoswitchable DRONPA-s monitors nucleocytoplasmic transport of an RNA-binding protein in transgenic plants.
    Traffic. 2011 Jun;12(6):693-702 PMID: 21453442
  43. Dual roles of the nuclear cap-binding complex and SERRATE in pre-mRNA splicing and microRNA processing in Arabidopsis thaliana.
    Proc Natl Acad Sci U S A. 2008 Jun 24;105(25):8795-800 PMID: 18550839
  44. The spliceosome: design principles of a dynamic RNP machine.
    Cell. 2009 Feb 20;136(4):701-18 PMID: 19239890
  45. The organization of spliceosomal components in the nuclei of higher plants.
    J Cell Sci. 1995 Feb;108 ( Pt 2):509-18 PMID: 7768997
  46. Dynamic nucleocytoplasmic shuttling of an Arabidopsis SR splicing factor: role of the RNA-binding domains.
    Plant Physiol. 2010 May;153(1):273-84 PMID: 20237019
  47. Reciprocal regulation of glycine-rich RNA-binding proteins via an interlocked feedback loop coupling alternative splicing to nonsense-mediated decay in Arabidopsis.
    Nucleic Acids Res. 2008 Dec;36(22):6977-87 PMID: 18987006
  48. Regulation of plant innate immunity by three proteins in a complex conserved across the plant and animal kingdoms.
    Genes Dev. 2007 Jun 15;21(12):1484-93 PMID: 17575050
  49. Shuttling SR proteins: more than splicing factors.
    FEBS J. 2011 Sep;278(18):3246-55 PMID: 21794093
  50. Alternative splicing of pre-mRNAs of Arabidopsis serine/arginine-rich proteins: regulation by hormones and stresses.
    Plant J. 2007 Mar;49(6):1091-107 PMID: 17319848
  51. Biogenesis of nuclear bodies.
    Cold Spring Harb Perspect Biol. 2010 Dec;2(12):a000711 PMID: 21068152
  52. Plant-specific SR-related protein atSR45a interacts with spliceosomal proteins in plant nucleus.
    Plant Mol Biol. 2009 Jun;70(3):241-52 PMID: 19238562
  53. AtCyp59 is a multidomain cyclophilin from Arabidopsis thaliana that interacts with SR proteins and the C-terminal domain of the RNA polymerase II.
    RNA. 2006 Apr;12(4):631-43 PMID: 16497658
  54. Use of fluorescent protein tags to study nuclear organization of the spliceosomal machinery in transiently transformed living plant cells.
    Mol Biol Cell. 2004 Jul;15(7):3233-43 PMID: 15133128
  55. Alternative splicing modulation by a LAMMER kinase impinges on developmental and transcriptome expression.
    Plant Cell. 2003 Apr;15(4):926-38 PMID: 12671088
  56. Co-localisation studies of Arabidopsis SR splicing factors reveal different types of speckles in plant cell nuclei.
    Exp Cell Res. 2008 Oct 15;314(17):3175-86 PMID: 18674533
  57. Regulation of alternative splicing of pre-mRNAs by stresses.
    Curr Top Microbiol Immunol. 2008;326:257-75 PMID: 18630757
  58. Cell-to-cell trafficking of RNA and RNA silencing through plasmodesmata.
    Protoplasma. 2011 Jan;248(1):101-16 PMID: 21042816
  59. Visualization of RNA-protein interactions in living cells: FMRP and IMP1 interact on mRNAs.
    EMBO J. 2004 Aug 18;23(16):3346-55 PMID: 15282548
  60. UBA1 and UBA2, two proteins that interact with UBP1, a multifunctional effector of pre-mRNA maturation in plants.
    Mol Cell Biol. 2002 Jun;22(12):4346-57 PMID: 12024044
  61. Genome-wide analysis of alternative splicing in Chlamydomonas reinhardtii.
    BMC Genomics. 2010 Feb 17;11:114 PMID: 20163725
  62. The ASRG database: identification and survey of Arabidopsis thaliana genes involved in pre-mRNA splicing.
    Genome Biol. 2004;5(12):R102 PMID: 15575968
  63. Alternative splicing of pre-messenger RNAs in plants in the genomic era.
    Annu Rev Plant Biol. 2007;58:267-94 PMID: 17222076
  64. Characterization of 43 non-protein-coding mRNA genes in Arabidopsis, including the MIR162a-derived transcripts.
    Plant Physiol. 2006 Apr;140(4):1192-204 PMID: 16500993
  65. RAC GTPases in tobacco and Arabidopsis mediate auxin-induced formation of proteolytically active nuclear protein bodies that contain AUX/IAA proteins.
    Plant Cell. 2005 Aug;17(8):2369-83 PMID: 15994909
  66. Fluorescence proteins, live-cell imaging, and mechanobiology: seeing is believing.
    Annu Rev Biomed Eng. 2008;10:1-38 PMID: 18647110
  67. A cyclin-dependent protein kinase, CDKC2, colocalizes with and modulates the distribution of spliceosomal components in Arabidopsis.
    Plant J. 2008 Apr;54(2):220-35 PMID: 18208522
  68. Phytochrome nuclear body: an emerging model to study interphase nuclear dynamics and signaling.
    Curr Opin Plant Biol. 2008 Oct;11(5):503-8 PMID: 18691930
  69. Son is essential for nuclear speckle organization and cell cycle progression.
    Mol Biol Cell. 2010 Feb 15;21(4):650-63 PMID: 20053686
  70. Compartmentalization of the splicing machinery in plant cell nuclei.
    Trends Plant Sci. 2004 Dec;9(12):565-8 PMID: 15564119
  71. The spliceosomal proteome: at the heart of the largest cellular ribonucleoprotein machine.
    Proteomics. 2010 Nov;10(22):4128-41 PMID: 21080498
  72. Interactions of Arabidopsis RS domain containing cyclophilins with SR proteins and U1 and U11 small nuclear ribonucleoprotein-specific proteins suggest their involvement in pre-mRNA Splicing.
    J Biol Chem. 2004 Aug 6;279(32):33890-8 PMID: 15166240
  73. Spatiotemporal organization of pre-mRNA splicing proteins in plants.
    Curr Top Microbiol Immunol. 2008;326:103-18 PMID: 18630749
  74. Techniques for following the movement of single RNAs in living cells.
    Wiley Interdiscip Rev RNA. 2011 Jul-Aug;2(4):601-9 PMID: 21957047
  75. Spliceosomal proteins in plants.
    Curr Top Microbiol Immunol. 2008;326:1-15 PMID: 18630744
  76. Correction: High throughput approaches reveal splicing of primary microRNA transcripts and tissue specific expression of mature microRNAs in Vitis vinifera.
    BMC Genomics. 2010 Feb 12;11:109 PMID: 20152027
  77. Visualization of lipid droplet composition by direct organelle mass spectrometry.
    J Biol Chem. 2011 Feb 4;286(5):3298-306 PMID: 21118810
  78. Gene structures and processing of Arabidopsis thaliana HYL1-dependent pri-miRNAs.
    Nucleic Acids Res. 2009 May;37(9):3083-93 PMID: 19304749
  79. Molecular characterization and phylogeny of U2AF35 homologs in plants.
    Plant Physiol. 2006 Feb;140(2):624-36 PMID: 16407443
  80. Single mRNA tracking in live cells.
    Methods Enzymol. 2010;472:387-406 PMID: 20580973
  81. Advances in imaging RNA in plants.
    Trends Plant Sci. 2010 Apr;15(4):196-203 PMID: 20153241
  82. The plant U1 small nuclear ribonucleoprotein particle 70K protein interacts with two novel serine/arginine-rich proteins.
    Plant Cell. 1998 Oct;10(10):1637-48 PMID: 9761791
Article Info
Journal
Plant physiology
Abbr.
Plant Physiol
ISSN
1532-2548
Published
2012-01-00
Epub
2011-00-01
Pages
67-77
Language
English
Region
United States
NLM ID
0401224
PMCID
PMC3252098
Subset
IM
Grants
Austrian Science Fund FWF · I 254 · Austria
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