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PMID: 19582558 Published · ppublish English Journal Article Research Support, Non-U.S. Gov't

Elucidating anomalous protein diffusion in living cells with fluorescence correlation spectroscopy-facts and pitfalls.

Journal of fluorescence ·Vol. 20 ·No. 1 ·2010-01-00 ·Pages 19-26

Malchus N, Weiss M

Abstract

Anomalous protein diffusion has been frequently observed in intracellular fluids and on membranes of living cells. Indeed, a large variety of specimen, from bacteriae to mammalian cells, and several non-invasive measurement techniques, e.g. fluorescence correlation spectroscopy, have revealed that the mean square displacement (MSD) of proteins in vivo is often characterized by an anomalous power-law increase mean value of tau(t)(2) mean value of ~ t(alpha) with 0.5 < alpha </= 0.8. Here, we review these results with a particular focus on fluorescence correlation spectroscopy, and we report on possible causes of variations of the anomaly degree alpha. Moreover, we highlight generic consequences of anomalous diffusion that are likely to play an important role in the cellular context.

MeSH Terms
Cell Membrane/metabolism Cell Survival Diffusion HeLa Cells Humans Intracellular Fluid/metabolism Proteins/metabolism Spectrometry, Fluorescence/methods
Chemicals
Proteins
Authors & Affiliations
2 authors, click to expand affiliations / ORCID
Malchus Nina
Cellular Biophysics Group, German Cancer Research Center, c/o BIOQUANT, Im Neuenheimer Feld 267, 69120, Heidelberg, Germany.
Weiss Matthias
References (39)
39 references, click to expand
  1. Protein mobility in the cytoplasm of Escherichia coli.
    J Bacteriol. 1999 Jan;181(1):197-203 PMID: 9864330
  2. How can biochemical reactions within cells differ from those in test tubes?
    J Cell Sci. 2006 Jul 15;119(Pt 14):2863-9 PMID: 16825427
  3. Fluorescence correlation spectroscopy with single-molecule sensitivity on cell and model membranes.
    Cytometry. 1999 Jul 1;36(3):176-82 PMID: 10404965
  4. A biological interpretation of transient anomalous subdiffusion. I. Qualitative model.
    Biophys J. 2007 Feb 15;92(4):1178-91 PMID: 17142285
  5. Art and artefacts of fluorescence correlation spectroscopy.
    Curr Pharm Biotechnol. 2004 Apr;5(2):155-61 PMID: 15078149
  6. Single-molecule microscopy on model membranes reveals anomalous diffusion.
    Biophys J. 1997 Aug;73(2):1073-80 PMID: 9251823
  7. The degree of macromolecular crowding in the cytoplasm and nucleoplasm of mammalian cells is conserved.
    FEBS Lett. 2007 Oct 30;581(26):5094-8 PMID: 17923125
  8. Dual-color visualization of trans-Golgi network to plasma membrane traffic along microtubules in living cells.
    J Cell Sci. 1999 Jan;112 ( Pt 1):21-33 PMID: 9841901
  9. Random time-scale invariant diffusion and transport coefficients.
    Phys Rev Lett. 2008 Aug 1;101(5):058101 PMID: 18764430
  10. Anomalous diffusion due to obstacles: a Monte Carlo study.
    Biophys J. 1994 Feb;66(2 Pt 1):394-401 PMID: 8161693
  11. Detection of non-Brownian diffusion in the cell membrane in single molecule tracking.
    Biophys J. 2005 Mar;88(3):2266-77 PMID: 15613635
  12. Probing the nanoscale viscoelasticity of intracellular fluids in living cells.
    Biophys J. 2007 Jul 1;93(1):316-23 PMID: 17416631
  13. Anomalous diffusion of proteins due to molecular crowding.
    Biophys J. 2005 Nov;89(5):2960-71 PMID: 16113107
  14. Fluorescence correlation spectroscopy close to a fluctuating membrane.
    Biophys J. 2003 Mar;84(3):2005-20 PMID: 12609903
  15. Fluorescence correlation spectroscopy in small cytosolic compartments depends critically on the diffusion model used.
    Biophys J. 2000 Dec;79(6):3294-306 PMID: 11106632
  16. Partitioning of lipid-modified monomeric GFPs into membrane microdomains of live cells.
    Science. 2002 May 3;296(5569):913-6 PMID: 11988576
  17. Density of newly synthesized plasma membrane proteins in intracellular membranes. I. Stereological studies.
    J Cell Biol. 1984 Jun;98(6):2133-41 PMID: 6563037
  18. Anomalous diffusion of major histocompatibility complex class I molecules on HeLa cells determined by single particle tracking.
    Biophys J. 1999 Jun;76(6):3331-44 PMID: 10354459
  19. Physical nature of bacterial cytoplasm.
    Phys Rev Lett. 2006 Mar 10;96(9):098102 PMID: 16606319
  20. Nonergodicity mimics inhomogeneity in single particle tracking.
    Phys Rev Lett. 2008 Jun 27;100(25):250602 PMID: 18643647
  21. Anomalous diffusion probes microstructure dynamics of entangled F-actin networks.
    Phys Rev Lett. 2004 Apr 30;92(17):178101 PMID: 15169197
  22. Spatiotemporal dynamics of the COPI vesicle machinery.
    EMBO Rep. 2003 Oct;4(10):1000-4 PMID: 14502225
  23. Crowding effects on diffusion in solutions and cells.
    Annu Rev Biophys. 2008;37:247-63 PMID: 18573081
  24. Cell biology: join the crowd.
    Nature. 2003 Sep 4;425(6953):27-8 PMID: 12955122
  25. Density of newly synthesized plasma membrane proteins in intracellular membranes II. Biochemical studies.
    J Cell Biol. 1984 Jun;98(6):2142-7 PMID: 6563038
  26. Probing individual molecules with confocal fluorescence microscopy.
    Science. 1994 Nov 11;266(5187):1018-21 PMID: 7973650
  27. Monte carlo simulations of enzyme reactions in two dimensions: fractal kinetics and spatial segregation.
    Biophys J. 2002 Oct;83(4):1891-901 PMID: 12324410
  28. Long-range nonanomalous diffusion of quantum dot-labeled aquaporin-1 water channels in the cell plasma membrane.
    Biophys J. 2008 Jan 15;94(2):702-13 PMID: 17890385
  29. Focal volume optics and experimental artifacts in confocal fluorescence correlation spectroscopy.
    Biophys J. 2002 Oct;83(4):2300-17 PMID: 12324447
  30. Anomalous protein diffusion in living cells as seen by fluorescence correlation spectroscopy.
    Biophys J. 2003 Jun;84(6):4043-52 PMID: 12770908
  31. Fluorescence correlation spectroscopy: the case of subdiffusion.
    Biophys J. 2009 Mar 18;96(6):2055-63 PMID: 19289033
  32. Fluorescence correlation spectroscopy. II. An experimental realization.
    Biopolymers. 1974 Jan;13(1):29-61 PMID: 4818131
  33. Anomalous diffusion in living yeast cells.
    Phys Rev Lett. 2004 Aug 13;93(7):078102 PMID: 15324280
  34. Stabilizing Turing patterns with subdiffusion in systems with low particle numbers.
    Phys Rev E Stat Nonlin Soft Matter Phys. 2003 Sep;68(3 Pt 2):036213 PMID: 14524874
  35. Active protein transport through plastid tubules: velocity quantified by fluorescence correlation spectroscopy.
    J Cell Sci. 2000 Nov;113 ( Pt 22):3921-30 PMID: 11058079
  36. Anomalous subdiffusion is a measure for cytoplasmic crowding in living cells.
    Biophys J. 2004 Nov;87(5):3518-24 PMID: 15339818
  37. Sampling the cell with anomalous diffusion - the discovery of slowness.
    Biophys J. 2008 Jan 1;94(1):90-4 PMID: 17827216
  38. Anomalous diffusion of fluorescent probes inside living cell nuclei investigated by spatially-resolved fluorescence correlation spectroscopy.
    J Mol Biol. 2000 May 12;298(4):677-89 PMID: 10788329
  39. Anomalous subdiffusion in fluorescence photobleaching recovery: a Monte Carlo study.
    Biophys J. 2001 Oct;81(4):2226-40 PMID: 11566793
Article Info
Journal
Journal of fluorescence
Abbr.
J Fluoresc
ISSN
1573-4994
Published
2010-01-00
Epub
2009-00-07
Pages
19-26
Language
English
Region
Netherlands
NLM ID
9201341
Subset
IM
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