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Anomalous subdiffusion is a measure for cytoplasmic crowding in living cells.

Biophysical journal ·Vol. 87 ·No. 5 ·2004-11-00 ·Pages 3518-24

Weiss M, Elsner M, Kartberg F, Nilsson T

Abstract

Macromolecular crowding dramatically affects cellular processes such as protein folding and assembly, regulation of metabolic pathways, and condensation of DNA. Despite increased attention, we still lack a definition for how crowded a heterogeneous environment is at the molecular scale and how this manifests in basic physical phenomena like diffusion. Here, we show by means of fluorescence correlation spectroscopy and computer simulations that crowding manifests itself through the emergence of anomalous subdiffusion of cytoplasmic macromolecules. In other words, the mean square displacement of a protein will grow less than linear in time and the degree of this anomality depends on the size and conformation of the traced particle and on the total protein concentration of the solution. We therefore propose that the anomality of the diffusion can be used as a quantifiable measure for the crowdedness of the cytoplasm at the molecular scale.

MeSH Terms
Computer Simulation Cytoplasm/chemistry,metabolism Dextrans/chemistry,metabolism Diffusion HeLa Cells Humans Macromolecular Substances Models, Biological Models, Chemical Particle Size
Chemicals
Dextrans Macromolecular Substances
Authors & Affiliations
4 authors, click to expand affiliations / ORCID
Weiss Matthias
MEMPHYS-Center for Biomembrane Physics, Physics Department, University of Southern Denmark, Campusvej 55, Odense M, Denmark.
Elsner Markus
Kartberg Fredrik
Nilsson Tommy
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Article Info
Journal
Biophysical journal
Abbr.
Biophys J
ISSN
0006-3495
Published
2004-11-00
Epub
2004-00-31
Pages
3518-24
Language
English
Region
United States
NLM ID
0370626
PMCID
PMC1304817
Subset
IM
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