Abstract
The leaf surfaces of Tamarix, a salt-secreting desert tree, harbor a diverse community of microbial epiphytes. This ecosystem presents a unique combination of ecological characteristics and imposes a set of extreme stress conditions. The composition of the microbial community along ecological gradients was studied from analyses of microbial richness and diversity in the phyllosphere of three Tamarix species in the Mediterranean and Dead Sea regions in Israel and in two locations in the United States. Over 200,000 sequences of the 16S V6 and 18S V9 hypervariable regions revealed a diverse community, with 788 bacterial and 64 eukaryotic genera but only one archaeal genus. Both geographic location and tree species were determinants of microbial community structures, with the former being more dominant. Tree leaves of all three species in the Mediterranean region were dominated by Halomonas and Halobacteria, whereas trees from the Dead Sea area were dominated by Actinomycetales and Bacillales. Our findings demonstrate that microbial phyllosphere communities on different Tamarix species are highly similar in the same locale, whereas trees of the same species that grow in different climatic regions host distinct microbial communities.
MeSH Terms
Archaea/classification,genetics,isolation & purification
Bacteria/classification,genetics,isolation & purification
Biodiversity
Fungi/classification,genetics,isolation & purification
Israel
Mediterranean Region
Phylogeography
Plant Leaves/microbiology
Tamaricaceae/microbiology
United States
Authors & Affiliations
5 authors, click to expand affiliations / ORCID
Finkel Omri M
Institute of Life Sciences, the Hebrew University of Jerusalem, Jerusalem, Israel.
Burch Adrien Y
Lindow Steven E
Post Anton F
Belkin Shimshon
References (28)
28 references, click to expand
-
Exploring microbial diversity and taxonomy using SSU rRNA hypervariable tag sequencing.
PLoS Genet. 2008 Nov;4(11):e1000255
PMID: 19023400
-
Role of leaf surface sugars in colonization of plants by bacterial epiphytes.
Appl Environ Microbiol. 2000 Jan;66(1):369-74
PMID: 10618250
-
Bacterial diversity in tree canopies of the Atlantic forest.
Science. 2006 Jun 30;312(5782):1917
PMID: 16809531
-
Composition of the phyllospheric microbial populations on vegetable plants with different glucosinolate and carotenoid compositions.
Microb Ecol. 2008 Aug;56(2):364-72
PMID: 18183453
-
Microbial biogeography: putting microorganisms on the map.
Nat Rev Microbiol. 2006 Feb;4(2):102-12
PMID: 16415926
-
Fungi, leaves, and the theory of island biogeography.
Microb Ecol. 1987 Nov;14(3):277-90
PMID: 24202721
-
Accuracy and quality of massively parallel DNA pyrosequencing.
Genome Biol. 2007;8(7):R143
PMID: 17659080
-
Changes in the phyllosphere community of the resurrection fern, Polypodium polypodioides, associated with rainfall and wetting.
FEMS Microbiol Ecol. 2006 Nov;58(2):236-46
PMID: 17064265
-
Effect of sampling scale on the assessment of epiphytic bacterial populations.
Microb Ecol. 1995 May;29(3):283-97
PMID: 24185347
-
Experimental factors affecting PCR-based estimates of microbial species richness and evenness.
ISME J. 2010 May;4(5):642-7
PMID: 20090784
-
Comparative community genomics in the Dead Sea: an increasingly extreme environment.
ISME J. 2010 Mar;4(3):399-407
PMID: 20033072
-
Microbial phyllosphere populations are more complex than previously realized.
Proc Natl Acad Sci U S A. 2001 Mar 27;98(7):3889-94
PMID: 11274410
-
Introducing mothur: open-source, platform-independent, community-supported software for describing and comparing microbial communities.
Appl Environ Microbiol. 2009 Dec;75(23):7537-41
PMID: 19801464
-
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria.
Proc Natl Acad Sci U S A. 2009 Sep 22;106(38):16428-33
PMID: 19805315
-
Ironing out the wrinkles in the rare biosphere through improved OTU clustering.
Environ Microbiol. 2010 Jul;12(7):1889-98
PMID: 20236171
-
Drop-size soda lakes: transient microbial habitats on a salt-secreting desert tree.
Genetics. 2008 Mar;178(3):1615-22
PMID: 18245835
-
Site and plant species are important determinants of the Methylobacterium community composition in the plant phyllosphere.
ISME J. 2010 Jun;4(6):719-28
PMID: 20164863
-
The pervasive effects of an antibiotic on the human gut microbiota, as revealed by deep 16S rRNA sequencing.
PLoS Biol. 2008 Nov 18;6(11):e280
PMID: 19018661
-
A detailed phenotypic characterisation of the type strains of Halomonas species.
Syst Appl Microbiol. 2002 Oct;25(3):360-75
PMID: 12421074
-
Microbiology of the phyllosphere.
Appl Environ Microbiol. 2003 Apr;69(4):1875-83
PMID: 12676659
-
Microbial diversity in the deep sea and the underexplored "rare biosphere".
Proc Natl Acad Sci U S A. 2006 Aug 8;103(32):12115-20
PMID: 16880384
-
The ecology of the phyllosphere: geographic and phylogenetic variability in the distribution of bacteria on tree leaves.
Environ Microbiol. 2010 Nov;12(11):2885-93
PMID: 20545741
-
A method for studying protistan diversity using massively parallel sequencing of V9 hypervariable regions of small-subunit ribosomal RNA genes.
PLoS One. 2009 Jul 27;4(7):e6372
PMID: 19633714
-
Phyllosphere microbiology with special reference to diversity and plant genotype.
J Appl Microbiol. 2008 Dec;105(6):1744-55
PMID: 19120625
-
The role of ecological theory in microbial ecology.
Nat Rev Microbiol. 2007 May;5(5):384-92
PMID: 17435792
-
Spatial scaling of microbial biodiversity.
Trends Ecol Evol. 2006 Sep;21(9):501-7
PMID: 16815589
-
Bacterial succession on the leaf surface: a novel system for studying successional dynamics.
Microb Ecol. 2009 Jul;58(1):189-98
PMID: 19221834
-
The Ecology and Biogeography of Microorganisms on Plant Surfaces.
Annu Rev Phytopathol. 2000 Sep;38:145-180
PMID: 11701840