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PMID: 19221834 Published · ppublish English Journal Article Research Support, Non-U.S. Gov't Research Support, U.S. Gov't, Non-P.H.S.

Bacterial succession on the leaf surface: a novel system for studying successional dynamics.

Microbial ecology ·Vol. 58 ·No. 1 ·2009-07-00 ·Pages 189-98

Redford AJ, Fierer N

Abstract

Succession is a widely studied process in plant and animal systems, but succession in microbial communities has received relatively little attention despite the ubiquity of microorganisms in natural habitats. One important microbial habitat is the phyllosphere, or leaf surface, which harbors large, diverse populations of bacteria and offers unique opportunities for the study of succession and temporal community assembly patterns. To explore bacterial community successional patterns, we sampled phyllosphere communities on cottonwood (Populus deltoides) trees multiple times across the growing season, from leaf emergence to leaf fall. Bacterial community composition was highly variable throughout the growing season; leaves sampled as little as a week apart were found to harbor significantly different communities, and the temporal variability on a given tree exceeded the variability in community composition between individual trees sampled on a given day. The bacterial communities clearly clustered into early-, mid-, and late-season clusters, with early- and late-season communities being more similar to each other than to the mid-season communities, and these patterns appeared consistent from year to year. Although we observed clear and predictable changes in bacterial community composition during the course of the growing season, changes in phyllosphere bacterial diversity were less predictable. We examined the species-time relationship, a measure of species turnover rate, and found that the relationship was fundamentally similar to that observed in plant and invertebrate communities, just on a shorter time scale. The temporal dynamics we observed suggest that although phyllosphere bacterial communities have high levels of phylogenetic diversity and rapid turnover rates, these communities follow predictable successional patterns from season to season.

MeSH Terms
Bacteria/classification,genetics,growth & development Biodiversity DNA, Bacterial/genetics Phylogeny Plant Leaves/microbiology Populus/microbiology RNA, Ribosomal, 16S/genetics Seasons Sequence Alignment Sequence Analysis, DNA
Chemicals
DNA, Bacterial RNA, Ribosomal, 16S
Authors & Affiliations
2 authors, click to expand affiliations / ORCID
Redford Amanda J
Department of Ecology and Evolutionary Biology, University of Colorado, Boulder, CO 80309, USA. redford@colorado.edu
Fierer Noah
References (38)
38 references, click to expand
  1. Microbial community analysis in incompletely or destructively sampled systems.
    Microb Ecol. 1992 Nov;24(3):227-42 PMID: 24193204
  2. Bacterial diversity in tree canopies of the Atlantic forest.
    Science. 2006 Jun 30;312(5782):1917 PMID: 16809531
  3. Distribution of epiphytic bacteria on olive leaves and the influence of leaf age and sampling time.
    Microb Ecol. 1991 Dec;21(1):35-48 PMID: 24194200
  4. Greengenes, a chimera-checked 16S rRNA gene database and workbench compatible with ARB.
    Appl Environ Microbiol. 2006 Jul;72(7):5069-72 PMID: 16820507
  5. The species concept for prokaryotes.
    FEMS Microbiol Rev. 2001 Jan;25(1):39-67 PMID: 11152940
  6. A taxa-area relationship for bacteria.
    Nature. 2004 Dec 9;432(7018):750-3 PMID: 15592412
  7. Introducing TreeClimber, a test to compare microbial community structures.
    Appl Environ Microbiol. 2006 Apr;72(4):2379-84 PMID: 16597933
  8. UniFrac: a new phylogenetic method for comparing microbial communities.
    Appl Environ Microbiol. 2005 Dec;71(12):8228-35 PMID: 16332807
  9. Microbial succession during ripening of Naples-type salami, a southern Italian fermented sausage.
    Meat Sci. 2000 Dec;56(4):321-9 PMID: 22062161
  10. NAST: a multiple sequence alignment server for comparative analysis of 16S rRNA genes.
    Nucleic Acids Res. 2006 Jul 1;34(Web Server issue):W394-9 PMID: 16845035
  11. Bacterial community succession in natural river biofilm assemblages.
    Microb Ecol. 2005 Nov;50(4):589-601 PMID: 16341639
  12. Temporal scaling of bacterial taxa is influenced by both stochastic and deterministic ecological factors.
    Environ Microbiol. 2008 Jun;10(6):1411-8 PMID: 18205822
  13. FastGroupII: a web-based bioinformatics platform for analyses of large 16S rDNA libraries.
    BMC Bioinformatics. 2006 Feb 07;7:57 PMID: 16464253
  14. Phylogenetic approaches for describing and comparing the diversity of microbial communities.
    Appl Environ Microbiol. 2002 Aug;68(8):3673-82 PMID: 12147459
  15. Identification of early microbial colonizers in human dental biofilm.
    J Appl Microbiol. 2004;97(6):1311-8 PMID: 15546422
  16. Development of the human infant intestinal microbiota.
    PLoS Biol. 2007 Jul;5(7):e177 PMID: 17594176
  17. Estimating terrestrial biodiversity through extrapolation.
    Philos Trans R Soc Lond B Biol Sci. 1994 Jul 29;345(1311):101-18 PMID: 7972351
  18. Succession of microbial communities during hot composting as detected by PCR-single-strand-conformation polymorphism-based genetic profiles of small-subunit rRNA genes.
    Appl Environ Microbiol. 2000 Mar;66(3):930-6 PMID: 10698754
  19. The Diversity of Archaea and Bacteria in Association with the Roots of Zea mays L.
    Microb Ecol. 2001 Apr;41(3):252-263 PMID: 11391463
  20. Microbiology of the phyllosphere.
    Appl Environ Microbiol. 2003 Apr;69(4):1875-83 PMID: 12676659
  21. PCR-DGGE fingerprints of microbial succession during a manufacture of traditional water buffalo mozzarella cheese.
    J Appl Microbiol. 2004;96(2):263-70 PMID: 14723687
  22. Long-term succession of structure and diversity of a biofilm formed in a model drinking water distribution system.
    Appl Environ Microbiol. 2003 Nov;69(11):6899-907 PMID: 14602654
  23. Molecular monitoring of succession of bacterial communities in human neonates.
    Appl Environ Microbiol. 2002 Jan;68(1):219-26 PMID: 11772630
  24. A molecular view of microbial diversity and the biosphere.
    Science. 1997 May 2;276(5313):734-40 PMID: 9115194
  25. Diversity in tropical rain forests and coral reefs.
    Science. 1978 Mar 24;199(4335):1302-10 PMID: 17840770
  26. The strategy of ecosystem development.
    Science. 1969 Apr 18;164(3877):262-70 PMID: 5776636
  27. Microbial degradation of paintings
    Appl Environ Microbiol. 1999 Mar;65(3):879-85 PMID: 10049836
  28. Microbial succession of Debaryomyces hansenii strains during the production of Danish surfaced-ripened cheeses.
    J Dairy Sci. 2002 Mar;85(3):478-86 PMID: 11949849
  29. Assessment of soil microbial community structure by use of taxon-specific quantitative PCR assays.
    Appl Environ Microbiol. 2005 Jul;71(7):4117-20 PMID: 16000830
  30. RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models.
    Bioinformatics. 2006 Nov 1;22(21):2688-90 PMID: 16928733
  31. Ultraviolet radiation alters maize phyllosphere bacterial diversity.
    Microb Ecol. 2003 May;45(4):353-61 PMID: 12704563
  32. The Ecology and Biogeography of Microorganisms on Plant Surfaces.
    Annu Rev Phytopathol. 2000 Sep;38:145-180 PMID: 11701840
  33. Microbial succession associated with organic matter decomposition during thermophilic composting of organic waste.
    Waste Manag Res. 2005 Feb;23(1):48-56 PMID: 15751395
  34. Microbial phyllosphere populations are more complex than previously realized.
    Proc Natl Acad Sci U S A. 2001 Mar 27;98(7):3889-94 PMID: 11274410
  35. Microbial community succession in an unvegetated, recently deglaciated soil.
    Microb Ecol. 2007 Jan;53(1):110-22 PMID: 17186150
  36. Microbial population dynamics on leaves.
    Annu Rev Phytopathol. 1997;35:327-47 PMID: 15012527
  37. Phylogenetic identification and in situ detection of individual microbial cells without cultivation.
    Microbiol Rev. 1995 Mar;59(1):143-69 PMID: 7535888
  38. NULL MODELS FOR THE NUMBER OF EVOLUTIONARY STEPS IN A CHARACTER ON A PHYLOGENETIC TREE.
    Evolution. 1991 Aug;45(5):1184-1197 PMID: 28564173
Article Info
Journal
Microbial ecology
Abbr.
Microb Ecol
ISSN
1432-184X
Published
2009-07-00
Epub
2009-00-17
Pages
189-98
Language
English
Region
United States
NLM ID
7500663
Subset
IM
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