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PMID: 18245835 Published · ppublish English Journal Article Research Support, Non-U.S. Gov't

Drop-size soda lakes: transient microbial habitats on a salt-secreting desert tree.

Genetics ·Vol. 178 ·No. 3 ·2008-03-00 ·Pages 1615-22

Qvit-Raz N, Jurkevitch E, Belkin S

Abstract

We describe a hitherto unrecognized bacterial community, inhabiting the leaf surfaces of the salt-excreting desert tree Tamarix. High temperatures, strong radiation, and very low humidity dictate a daytime existence in complete desiccation, but damp nights allow the microbial population to proliferate in a sugar-rich, alkaline, and hypersaline solution, before drying up again after sunrise. The exclusively bacterial population contains many undescribed species and genera, but nevertheless appears to be characterized by relatively limited species diversity. Sequences of 16S rRNA genes from either isolates or total community DNA place the identified members of the community in five bacterial groups (Actinobacteria, Bacteroidetes, Firmicutes, alpha-, and gamma-Proteobacteria); in each of these, they concentrate in a very narrow branch that in most cases harbors organisms isolated from unrelated halophilic environments.

MeSH Terms
Bacteria/genetics,isolation & purification,ultrastructure Desert Climate Ecosystem Genetic Variation Molecular Sequence Data Phylogeny Plant Leaves/microbiology Plant Stems/ultrastructure Sequence Analysis, DNA Sodium Chloride/metabolism Tamaricaceae/microbiology
Chemicals
Sodium Chloride
Authors & Affiliations
3 authors, click to expand affiliations / ORCID
Qvit-Raz Noga
Department of Plant Pathology and Microbiology, The Hebrew University of Jerusalem, Jerusalem 91904, Israel.
Jurkevitch Edouard
Belkin Shimshon
References (34)
34 references, click to expand
  1. High bacterial diversity in permanently cold marine sediments.
    Appl Environ Microbiol. 1999 Sep;65(9):3982-9 PMID: 10473405
  2. The secret life of foliar bacterial pathogens on leaves.
    Annu Rev Phytopathol. 1995;33:145-72 PMID: 18294082
  3. New approaches to analyzing microbial biodiversity data.
    Curr Opin Microbiol. 2003 Jun;6(3):282-7 PMID: 12831905
  4. Estimating prokaryotic diversity and its limits.
    Proc Natl Acad Sci U S A. 2002 Aug 6;99(16):10494-9 PMID: 12097644
  5. Microbial ecology and evolution: a ribosomal RNA approach.
    Annu Rev Microbiol. 1986;40:337-65 PMID: 2430518
  6. Halomonas maura is a physiologically versatile bacterium of both ecological and biotechnological interest.
    Antonie Van Leeuwenhoek. 2006 Apr-May;89(3-4):395-403 PMID: 16622791
  7. Status of the microbial census.
    Microbiol Mol Biol Rev. 2004 Dec;68(4):686-91 PMID: 15590780
  8. The Ecology and Biogeography of Microorganisms on Plant Surfaces.
    Annu Rev Phytopathol. 2000 Sep;38:145-180 PMID: 11701840
  9. Microbial phyllosphere populations are more complex than previously realized.
    Proc Natl Acad Sci U S A. 2001 Mar 27;98(7):3889-94 PMID: 11274410
  10. The uncultured microbial majority.
    Annu Rev Microbiol. 2003;57:369-94 PMID: 14527284
  11. Phylogenetic group-specific oligodeoxynucleotide probes for identification of single microbial cells.
    J Bacteriol. 1988 Feb;170(2):720-6 PMID: 2448289
  12. Catabolic versatility of aromatic compound-degrading halophilic bacteria.
    FEMS Microbiol Ecol. 2005 Sep 1;54(1):97-109 PMID: 16329976
  13. Bacterial diversity in the rhizosphere of Proteaceae species.
    Environ Microbiol. 2005 Nov;7(11):1755-68 PMID: 16232290
  14. Distribution of prokaryotic genetic diversity in athalassohaline lakes of the Atacama Desert, Northern Chile.
    FEMS Microbiol Ecol. 2004 Apr 1;48(1):57-69 PMID: 19712431
  15. Introducing DOTUR, a computer program for defining operational taxonomic units and estimating species richness.
    Appl Environ Microbiol. 2005 Mar;71(3):1501-6 PMID: 15746353
  16. Counting the uncountable: statistical approaches to estimating microbial diversity.
    Appl Environ Microbiol. 2001 Oct;67(10):4399-406 PMID: 11571135
  17. Compatible and counteracting solutes: protecting cells from the Dead Sea to the deep sea.
    Sci Prog. 2004;87(Pt 1):1-24 PMID: 15651637
  18. Bacteria in the leaf ecosystem with emphasis on Pseudomonas syringae-a pathogen, ice nucleus, and epiphyte.
    Microbiol Mol Biol Rev. 2000 Sep;64(3):624-53 PMID: 10974129
  19. Bacterial diversity in tree canopies of the Atlantic forest.
    Science. 2006 Jun 30;312(5782):1917 PMID: 16809531
  20. Estimating the population size for capture-recapture data with unequal catchability.
    Biometrics. 1987 Dec;43(4):783-91 PMID: 3427163
  21. ARB: a software environment for sequence data.
    Nucleic Acids Res. 2004 Feb 25;32(4):1363-71 PMID: 14985472
  22. Phloem-sap feeding by animals: problems and solutions.
    J Exp Bot. 2006;57(4):747-54 PMID: 16449374
  23. Design and evaluation of useful bacterium-specific PCR primers that amplify genes coding for bacterial 16S rRNA.
    Appl Environ Microbiol. 1998 Feb;64(2):795-9 PMID: 9464425
  24. DGGE/TGGE a method for identifying genes from natural ecosystems.
    Curr Opin Microbiol. 1999 Jun;2(3):317-22 PMID: 10383868
  25. Bacterial diversity in three different Antarctic Cold Desert mineral soils.
    Microb Ecol. 2006 May;51(4):413-21 PMID: 16596438
  26. Adaptation to extreme environments: macromolecular dynamics in complex systems.
    Biochim Biophys Acta. 2005 Aug 5;1724(3):404-10 PMID: 15951115
  27. Depth distribution of microbial diversity in Mono Lake, a meromictic soda lake in California.
    Appl Environ Microbiol. 2003 Feb;69(2):1030-42 PMID: 12571026
  28. Analysis of actinomycete communities by specific amplification of genes encoding 16S rRNA and gel-electrophoretic separation in denaturing gradients.
    Appl Environ Microbiol. 1997 Aug;63(8):3233-41 PMID: 9251210
  29. Variation in microbial community composition and culturability in the rhizosphere of Leucanthemopsis alpina (L.) Heywood and adjacent bare soil along an alpine chronosequence.
    Microb Ecol. 2006 Nov;52(4):679-92 PMID: 16909346
  30. A detailed phenotypic characterisation of the type strains of Halomonas species.
    Syst Appl Microbiol. 2002 Oct;25(3):360-75 PMID: 12421074
  31. Microbiology of the phyllosphere.
    Appl Environ Microbiol. 2003 Apr;69(4):1875-83 PMID: 12676659
  32. Microbial diversity in the deep sea and the underexplored "rare biosphere".
    Proc Natl Acad Sci U S A. 2006 Aug 8;103(32):12115-20 PMID: 16880384
  33. Profiling of complex microbial populations by denaturing gradient gel electrophoresis analysis of polymerase chain reaction-amplified genes coding for 16S rRNA.
    Appl Environ Microbiol. 1993 Mar;59(3):695-700 PMID: 7683183
  34. Bacterial diversity in aquatic and other environments: what 16S rDNA libraries can tell us.
    FEMS Microbiol Ecol. 2004 Feb 1;47(2):161-77 PMID: 19712332
Article Info
Journal
Genetics
Abbr.
Genetics
ISSN
0016-6731
Published
2008-03-00
Epub
2008-00-03
Pages
1615-22
Language
English
Region
United States
NLM ID
0374636
PMCID
PMC2278082
Subset
IM
Databases
GENBANK
EU175877, EU175878, EU175879, EU175880, EU175881, EU175882, EU175883, EU175884, EU175885, EU175886, EU175887, EU175888, EU175889, EU175890, EU175891, EU175892, EU175893, EU175894, EU175895, EU175896, EU175897, EU175898, EU175899, EU175900, EU175901, EU175902, EU175903, EU175904, EU175905, EU175906, EU175907, EU175908, EU175909, EU175910, EU175911, EU175912, EU175913, EU175914, EU175915, EU175916, EU175917, EU175918, EU175919, EU175920, EU175921, EU175922, EU175923, EU175924, EU175925, EU175926, EU175927, EU175928, EU175929, EU175930, EU175931, EU175932, EU175933, EU175934, EU175935, EU175936, EU175937, EU175938, EU175939, EU175940, EU175941, EU175942, EU175943, EU175944, EU175945, EU175946, EU175947, EU175948, EU175949, EU175950, EU175951, EU175952, EU175953, EU175954, EU175955, EU175956, EU175957, EU175958, EU175959, EU175960, EU175961, EU175962, EU175963, EU175964, EU175965, EU175966, EU175967
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