Home LiteratureArticle Details
PMID: 20192736 Published · ppublish English Journal Article Research Support, N.I.H., Extramural Research Support, U.S. Gov't, Non-P.H.S. Review

Auxin biosynthesis and its role in plant development.

Annual review of plant biology ·Vol. 61 ·2010-00-00 ·Pages 49-64

Zhao Y

Abstract

Indole-3-acetic acid (IAA), the main auxin in higher plants, has profound effects on plant growth and development. Both plants and some plant pathogens can produce IAA to modulate plant growth. Although the genes and biochemical reactions for auxin biosynthesis in some plant pathogens are well understood, elucidation of the mechanisms by which plants produce auxin has proven to be difficult. So far, no single complete pathway of de novo auxin biosynthesis in plants has been firmly established. However, recent studies have led to the discoveries of several genes in tryptophan-dependent auxin biosynthesis pathways. Recent findings have also determined that local auxin biosynthesis plays essential roles in many developmental processes including gametogenesis, embryogenesis, seedling growth, vascular patterning, and flower development. In this review, I summarize the recent advances in dissecting auxin biosynthetic pathways and how the understanding of auxin biosynthesis provides a crucial angle for analyzing the mechanisms of plant development.

MeSH Terms
Arabidopsis/growth & development Biosynthetic Pathways Indoleacetic Acids/metabolism Plant Development
Chemicals
Indoleacetic Acids indoleacetic acid
Authors & Affiliations
1 authors, click to expand affiliations / ORCID
Zhao Yunde
Section of Cell and Developmental Biology, University of California, San Diego, La Jolla, California 92093-0116, USA. yzhao@ucsd.edu
References (72)
72 references, click to expand
  1. Studies on the role of the Arabidopsis gene MONOPTEROS in vascular development and plant cell axialization.
    Planta. 1996;200(2):229-37 PMID: 8904808
  2. Arabidopsis LEAFY COTYLEDON2 induces maturation traits and auxin activity: Implications for somatic embryogenesis.
    Proc Natl Acad Sci U S A. 2008 Feb 26;105(8):3151-6 PMID: 18287041
  3. Auxin biosynthesis by the YUCCA flavin monooxygenases controls the formation of floral organs and vascular tissues in Arabidopsis.
    Genes Dev. 2006 Jul 1;20(13):1790-9 PMID: 16818609
  4. The gene ENHANCER OF PINOID controls cotyledon development in the Arabidopsis embryo.
    Development. 2005 Sep;132(18):4063-74 PMID: 16107478
  5. The possible action mechanisms of indole-3-acetic acid methyl ester in Arabidopsis.
    Plant Cell Rep. 2008 Mar;27(3):575-84 PMID: 17926040
  6. Auxin: a trigger for change in plant development.
    Cell. 2009 Mar 20;136(6):1005-16 PMID: 19303845
  7. The gene MACCHI-BOU 4/ENHANCER OF PINOID encodes a NPH3-like protein and reveals similarities between organogenesis and phototropism at the molecular level.
    Development. 2007 Nov;134(21):3849-59 PMID: 17913786
  8. The Arabidopsis gene MONOPTEROS encodes a transcription factor mediating embryo axis formation and vascular development.
    EMBO J. 1998 Mar 2;17(5):1405-11 PMID: 9482737
  9. Biochemical analyses of indole-3-acetaldoxime-dependent auxin biosynthesis in Arabidopsis.
    Proc Natl Acad Sci U S A. 2009 Mar 31;106(13):5430-5 PMID: 19279202
  10. Interaction of auxin and ERECTA in elaborating Arabidopsis inflorescence architecture revealed by the activation tagging of a new member of the YUCCA family putative flavin monooxygenases.
    Plant Physiol. 2005 Sep;139(1):192-203 PMID: 16126863
  11. Auxin synthesized by the YUCCA flavin monooxygenases is essential for embryogenesis and leaf formation in Arabidopsis.
    Plant Cell. 2007 Aug;19(8):2430-9 PMID: 17704214
  12. Genetic and chemical analyses of the action mechanisms of sirtinol in Arabidopsis.
    Proc Natl Acad Sci U S A. 2005 Feb 22;102(8):3129-34 PMID: 15710899
  13. SPOROCYTELESS modulates YUCCA expression to regulate the development of lateral organs in Arabidopsis.
    New Phytol. 2008;179(3):751-764 PMID: 18557819
  14. Regulation of auxin response by the protein kinase PINOID.
    Cell. 2000 Feb 18;100(4):469-78 PMID: 10693763
  15. Functional redundancy of PIN proteins is accompanied by auxin-dependent cross-regulation of PIN expression.
    Development. 2005 Oct;132(20):4521-31 PMID: 16192309
  16. Local auxin biosynthesis modulates gradient-directed planar polarity in Arabidopsis.
    Nat Cell Biol. 2009 Jun;11(6):731-8 PMID: 19448626
  17. Auxin inhibits endocytosis and promotes its own efflux from cells.
    Nature. 2005 Jun 30;435(7046):1251-6 PMID: 15988527
  18. Arabidopsis ASA1 is important for jasmonate-mediated regulation of auxin biosynthesis and transport during lateral root formation.
    Plant Cell. 2009 May;21(5):1495-511 PMID: 19435934
  19. Arabidopsis mutants resistant to the auxin effects of indole-3-acetonitrile are defective in the nitrilase encoded by the NIT1 gene.
    Plant Cell. 1997 Oct;9(10):1781-90 PMID: 9368415
  20. AUXIN BIOSYNTHESIS.
    Annu Rev Plant Physiol Plant Mol Biol. 1997 Jun;48:51-66 PMID: 15012256
  21. Tryptophan-dependent indole-3-acetic acid biosynthesis by 'IAA-synthase' proceeds via indole-3-acetamide.
    Phytochemistry. 2009 Mar;70(4):523-31 PMID: 19268331
  22. Auxin transport is sufficient to generate a maximum and gradient guiding root growth.
    Nature. 2007 Oct 25;449(7165):1008-13 PMID: 17960234
  23. Auxin-dependent patterning and gamete specification in the Arabidopsis female gametophyte.
    Science. 2009 Jun 26;324(5935):1684-9 PMID: 19498110
  24. Recent advances and emerging trends in plant hormone signalling.
    Nature. 2009 Jun 25;459(7250):1071-8 PMID: 19553990
  25. NPY1, a BTB-NPH3-like protein, plays a critical role in auxin-regulated organogenesis in Arabidopsis.
    Proc Natl Acad Sci U S A. 2007 Nov 20;104(47):18825-9 PMID: 18000043
  26. The TRANSPORT INHIBITOR RESPONSE2 gene is required for auxin synthesis and diverse aspects of plant development.
    Plant Physiol. 2009 Sep;151(1):168-79 PMID: 19625638
  27. Constitutively wilted 1, a member of the rice YUCCA gene family, is required for maintaining water homeostasis and an appropriate root to shoot ratio.
    Plant Mol Biol. 2007 Sep;65(1-2):125-36 PMID: 17619151
  28. The Arabidopsis BODENLOS gene encodes an auxin response protein inhibiting MONOPTEROS-mediated embryo patterning.
    Genes Dev. 2002 Jul 1;16(13):1610-5 PMID: 12101120
  29. yucca6, a dominant mutation in Arabidopsis, affects auxin accumulation and auxin-related phenotypes.
    Plant Physiol. 2007 Nov;145(3):722-35 PMID: 17885085
  30. Purification and characterization of indolepyruvate decarboxylase. A novel enzyme for indole-3-acetic acid biosynthesis in Enterobacter cloacae.
    J Biol Chem. 1992 Aug 5;267(22):15823-8 PMID: 1639814
  31. Indole-3-Acetic Acid Biosynthesis in the Mutant Maize orange pericarp, a Tryptophan Auxotroph.
    Science. 1991 Nov 15;254(5034):998-1000 PMID: 17731524
  32. A rice tryptophan deficient dwarf mutant, tdd1, contains a reduced level of indole acetic acid and develops abnormal flowers and organless embryos.
    Plant J. 2009 Oct;60(2):227-41 PMID: 19682283
  33. Arabidopsis thaliana auxotrophs reveal a tryptophan-independent biosynthetic pathway for indole-3-acetic acid.
    Proc Natl Acad Sci U S A. 1993 Nov 1;90(21):10355-9 PMID: 8234297
  34. Molecular genetics of auxin signaling.
    Annu Rev Plant Biol. 2002;53:377-98 PMID: 12221981
  35. How canalization can make loops: a new model of reticulated leaf vascular pattern formation.
    J Theor Biol. 2006 Nov 21;243(2):235-44 PMID: 16887150
  36. Involvement of L-tryptophan aminotransferase in indole-3-acetic acid biosynthesis in Enterobacter cloacae.
    Biochim Biophys Acta. 1994 Dec 14;1209(2):241-7 PMID: 7811697
  37. Arabidopsis NPH3: A NPH1 photoreceptor-interacting protein essential for phototropism.
    Science. 1999 Oct 29;286(5441):961-4 PMID: 10542152
  38. The NGATHA distal organ development genes are essential for style specification in Arabidopsis.
    Plant Cell. 2009 May;21(5):1373-93 PMID: 19435933
  39. The TR-DNA region carrying the auxin synthesis genes of the Agrobacterium rhizogenes agropine-type plasmid pRiA4: nucleotide sequence analysis and introduction into tobacco plants.
    Mol Plant Microbe Interact. 1991 Mar-Apr;4(2):155-62 PMID: 1932811
  40. An auxin gradient and maximum in the Arabidopsis root apex shown by high-resolution cell-specific analysis of IAA distribution and synthesis.
    Plant Cell. 2009 Jun;21(6):1659-68 PMID: 19491238
  41. The NGATHA genes direct style development in the Arabidopsis gynoecium.
    Plant Cell. 2009 May;21(5):1394-409 PMID: 19435937
  42. TAA1-mediated auxin biosynthesis is essential for hormone crosstalk and plant development.
    Cell. 2008 Apr 4;133(1):177-91 PMID: 18394997
  43. Transgenic Tobacco Plants Coexpressing the Agrobacterium tumefaciens iaaM and iaaH Genes Display Altered Growth and Indoleacetic Acid Metabolism.
    Plant Physiol. 1992 Jul;99(3):1062-9 PMID: 16668972
  44. sparse inflorescence1 encodes a monocot-specific YUCCA-like gene required for vegetative and reproductive development in maize.
    Proc Natl Acad Sci U S A. 2008 Sep 30;105(39):15196-201 PMID: 18799737
  45. Arabidopsis mutants in the C-S lyase of glucosinolate biosynthesis establish a critical role for indole-3-acetaldoxime in auxin homeostasis.
    Plant J. 2004 Mar;37(5):770-7 PMID: 14871316
  46. Activation tagging using the En-I maize transposon system in Arabidopsis.
    Plant Physiol. 2002 Aug;129(4):1544-56 PMID: 12177467
  47. FLOOZY of petunia is a flavin mono-oxygenase-like protein required for the specification of leaf and flower architecture.
    Genes Dev. 2002 Mar 15;16(6):753-63 PMID: 11914280
  48. Plant development is regulated by a family of auxin receptor F box proteins.
    Dev Cell. 2005 Jul;9(1):109-19 PMID: 15992545
  49. The SUR2 gene of Arabidopsis thaliana encodes the cytochrome P450 CYP83B1, a modulator of auxin homeostasis.
    Proc Natl Acad Sci U S A. 2000 Dec 19;97(26):14819-24 PMID: 11114200
  50. Superroot, a recessive mutation in Arabidopsis, confers auxin overproduction.
    Plant Cell. 1995 Sep;7(9):1405-19 PMID: 8589625
  51. Inactive methyl indole-3-acetic acid ester can be hydrolyzed and activated by several esterases belonging to the AtMES esterase family of Arabidopsis.
    Plant Physiol. 2008 Jul;147(3):1034-45 PMID: 18467465
  52. Trp-dependent auxin biosynthesis in Arabidopsis: involvement of cytochrome P450s CYP79B2 and CYP79B3.
    Genes Dev. 2002 Dec 1;16(23):3100-12 PMID: 12464638
  53. Efflux-dependent auxin gradients establish the apical-basal axis of Arabidopsis.
    Nature. 2003 Nov 13;426(6963):147-53 PMID: 14614497
  54. A constant production hypothesis guides leaf venation patterning.
    Proc Natl Acad Sci U S A. 2006 Jun 13;103(24):9363-8 PMID: 16754846
  55. STY1 regulates auxin homeostasis and affects apical-basal patterning of the Arabidopsis gynoecium.
    Plant J. 2006 Jul;47(1):112-23 PMID: 16740145
  56. Arabidopsis cytochrome P450s that catalyze the first step of tryptophan-dependent indole-3-acetic acid biosynthesis.
    Proc Natl Acad Sci U S A. 2000 Feb 29;97(5):2379-84 PMID: 10681464
  57. Rapid synthesis of auxin via a new tryptophan-dependent pathway is required for shade avoidance in plants.
    Cell. 2008 Apr 4;133(1):164-76 PMID: 18394996
  58. Transgene-mediated auxin overproduction in Arabidopsis: hypocotyl elongation phenotype and interactions with the hy6-1 hypocotyl elongation and axr1 auxin-resistant mutants.
    Plant Mol Biol. 1995 Mar;27(6):1071-83 PMID: 7766890
  59. A role for flavin monooxygenase-like enzymes in auxin biosynthesis.
    Science. 2001 Jan 12;291(5502):306-9 PMID: 11209081
  60. Auxin: regulation, action, and interaction.
    Ann Bot. 2005 Apr;95(5):707-35 PMID: 15749753
  61. Sur2 mutations of Arabidopsis thaliana define a new locus involved in the control of auxin homeostasis.
    Plant J. 1998 Jun;14(5):603-11 PMID: 9675903
  62. Regulation of polar auxin transport by AtPIN1 in Arabidopsis vascular tissue.
    Science. 1998 Dec 18;282(5397):2226-30 PMID: 9856939
  63. A Link between ethylene and auxin uncovered by the characterization of two root-specific ethylene-insensitive mutants in Arabidopsis.
    Plant Cell. 2005 Aug;17(8):2230-42 PMID: 15980261
  64. Auxin biosynthesis by the YUCCA genes in rice.
    Plant Physiol. 2007 Mar;143(3):1362-71 PMID: 17220367
  65. Integration of transport-based models for phyllotaxis and midvein formation.
    Genes Dev. 2009 Feb 1;23(3):373-84 PMID: 19204121
  66. Flavin-containing monooxygenases: catalytic mechanism and substrate specificities.
    Drug Metab Rev. 1988;19(1):1-32 PMID: 3293953
  67. Molecular cloning and sequence analysis of an Azospirillum brasilense indole-3-pyruvate decarboxylase gene.
    Mol Gen Genet. 1994 May 25;243(4):463-72 PMID: 8202090
  68. Cloning characterization of iaaM, a virulence determinant of Pseudomonas savastanoi.
    J Bacteriol. 1982 Jan;149(1):40-6 PMID: 6274847
  69. Higher activity of an aldehyde oxidase in the auxin-overproducing superroot1 mutant of Arabidopsis thaliana.
    Plant Physiol. 1998 Feb;116(2):687-93 PMID: 9489015
  70. Auxin receptors and plant development: a new signaling paradigm.
    Annu Rev Cell Dev Biol. 2008;24:55-80 PMID: 18631113
  71. NPY genes and AGC kinases define two key steps in auxin-mediated organogenesis in Arabidopsis.
    Proc Natl Acad Sci U S A. 2008 Dec 30;105(52):21017-22 PMID: 19075219
  72. The NPH4 locus encodes the auxin response factor ARF7, a conditional regulator of differential growth in aerial Arabidopsis tissue.
    Plant Cell. 2000 May;12(5):757-70 PMID: 10810148
Article Info
Journal
Annual review of plant biology
Abbr.
Annu Rev Plant Biol
ISSN
1545-2123
Published
2010-00-00
Pages
49-64
Language
English
Region
United States
NLM ID
101140127
PMCID
PMC3070418
Subset
IM
Grants
NIGMS NIH HHS · R01 GM068631 · United States
NIGMS NIH HHS · R01 GM068631-06A1 · United States
NIGMS NIH HHS · R01 GM068631-07 · United States
NIGMS NIH HHS · R01GM068631 · United States
Analysis Services
Analysis Services

Contact

No. 2 Wenbo Road, Zhangqiu District, Jinan, Shandong

Qilu Normal University · Genelibs Bioinformatics Lab

750 Shunhua Rd, Jinan

2F, Bldg F, University Science Park

Tel: 0531-88819269

WeChat Official Account

Follow our WeChat subscription account for real-time updates and the latest in medical and biological research.


Business Email

E-mail: product@genelibs.com