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PMID: 1651416 Published · ppublish English Journal Article Research Support, U.S. Gov't, P.H.S.

Specific mutation of a regulatory site within the ATP-binding region of simian virus 40 large T antigen.

Journal of virology ·Vol. 65 ·No. 9 ·1991-09-00 ·Pages 4973-84

Weiner BM, Bradley MK

Abstract

In an attempt to distinguish simian virus 40 (SV40) large T antigen (T) binding to ATP from hydrolysis, specific mutations were made in the ATP-binding site of T according to our model for the site (M. K. Bradley, T. F. Smith, R. H. Lathrop, D. M. Livingston, and T. A. Webster, Proc. Natl. Acad. Sci. USA 84:4026-4030, 1987). Two acidic residues predicted to make contact with the magnesium phosphate were changed to alanines. The mutated T gene was completely defective for viral DNA synthesis and for virion production, and it was dominant defective for viral DNA replication. The defective T gene encoded a stable product (2905T) that oncogenically transformed mouse cell lines. 2905T, immunoprecipitated from transformed-cell extracts, bound SV40 origin DNA specifically and, surprisingly, it was active as an ATPase. A recombinant baculovirus was constructed for the production and purification of the mutant protein for detailed biochemical analyses. 2905T had only 10% of the ATPase and helicase of wild-type T. The Km of 2905T for ATP in ATPase assays was the same as the Km of wild-type T. ATP activated the ATPase activity of wild-type T, but not of 2905T. As tested by gel bandshift assay, 2905T bound to SV40 origin DNA and to individual sites I and II with affinities similar to that of the wild type. However, ATP did not modulate the DNA-binding activity of mutant T to site II. Therefore, this mutation in the ATP-binding site in T resulted in defects in the interaction between the protein and ATP that appeared to be responsible for the determination of the active state of T for DNA binding versus ATPase.

MeSH Terms
Adenosine Triphosphatases/metabolism Adenosine Triphosphate/metabolism Amino Acid Sequence Animals Antigens, Polyomavirus Transforming/genetics,metabolism Baculoviridae Base Sequence Binding Sites Cell Line Cell Transformation, Viral Chlorocebus aethiops Cloning, Molecular DNA Helicases/metabolism DNA Mutational Analysis DNA Replication DNA-Binding Proteins/genetics,metabolism Genetic Vectors Kinetics Mice Molecular Sequence Data Oligonucleotides/chemistry Protein Conformation Simian virus 40/genetics,growth & development Structure-Activity Relationship Virus Replication
Chemicals
Antigens, Polyomavirus Transforming DNA-Binding Proteins Oligonucleotides Adenosine Triphosphate Adenosine Triphosphatases DNA Helicases
Authors & Affiliations
2 authors, click to expand affiliations / ORCID
Weiner B M
Department of Biological Chemistry and Molecular Pharmacology, Harvard Medical School, Boston, Massachusetts.
Bradley M K
References (73)
73 references, click to expand
  1. Regulatory mutants of simian virus 40. Effect of mutations at a T antigen binding site on DNA replication and expression of viral genes.
    J Mol Biol. 1982 Apr 15;156(3):531-48 PMID: 6288959
  2. Isolation of mutants of an animal virus in bacteria.
    Science. 1980 Sep 19;209(4463):1392-6 PMID: 6251547
  3. Origin-defective mutants of SV40.
    Cold Spring Harb Symp Quant Biol. 1980;44 Pt 1,:293-300 PMID: 6253143
  4. Regulation of simian virus 40 early transcription in vitro by a purified tumor antigen.
    Proc Natl Acad Sci U S A. 1980 Oct;77(10):5706-10 PMID: 6255460
  5. Relationship of oligomerization to enzymatic and DNA-binding properties of the SV40 large T antigen.
    Cell. 1982 Jan;28(1):125-34 PMID: 6461415
  6. Hydrolysis of nucleoside triphosphates catalyzed by the recA protein of Escherichia coli. Characterization of ATP hydrolysis.
    J Biol Chem. 1981 Aug 25;256(16):8829-34 PMID: 7021552
  7. General model for nutritional responses of higher organisms.
    Proc Natl Acad Sci U S A. 1975 Nov;72(11):4327-31 PMID: 1060112
  8. In vitro mutagenesis of a putative DNA binding domain of SV40 large-T.
    Virology. 1984 Nov;139(1):109-37 PMID: 6093377
  9. Specific in vitro adenylylation of the simian virus 40 large tumor antigen.
    Proc Natl Acad Sci U S A. 1984 Nov;81(21):6574-8 PMID: 6093107
  10. Cellular factors required for multiple stages of SV40 DNA replication in vitro.
    EMBO J. 1988 Apr;7(4):1211-8 PMID: 2841119
  11. Simian virus 40 large T antigen DNA helicase. Characterization of the ATPase-dependent DNA unwinding activity and its substrate requirements.
    J Biol Chem. 1988 Jan 5;263(1):436-42 PMID: 2826446
  12. The unwinding of duplex regions in DNA by the simian virus 40 large tumor antigen-associated DNA helicase activity.
    J Biol Chem. 1988 Jan 5;263(1):383-92 PMID: 2826443
  13. Unwinding of duplex DNA from the SV40 origin of replication by T antigen.
    Science. 1987 Nov 13;238(4829):964-7 PMID: 2823389
  14. ATP enhances the binding of simian virus 40 large T antigen to the origin of replication.
    J Virol. 1987 Dec;61(12):3649-54 PMID: 2824805
  15. Localized melting and structural changes in the SV40 origin of replication induced by T-antigen.
    EMBO J. 1988 Oct;7(10):3149-58 PMID: 2846276
  16. SV40 DNA replication.
    J Biol Chem. 1988 Dec 5;263(34):17889-92 PMID: 2848017
  17. DNA helicase activity of SV40 large tumor antigen.
    EMBO J. 1986 Aug;5(8):1939-44 PMID: 3019672
  18. Allosteric control of simian virus 40 T-antigen binding to viral origin DNA.
    J Virol. 1986 Jun;58(3):765-72 PMID: 3009885
  19. A recombinant murine retrovirus for simian virus 40 large T cDNA transforms mouse fibroblasts to anchorage-independent growth.
    J Virol. 1986 Oct;60(1):290-3 PMID: 3018293
  20. trans-dominant defective mutants of simian virus 40 T antigen.
    J Virol. 1987 Feb;61(2):436-45 PMID: 3027373
  21. Monoclonal antibodies as probes for a function of large T antigen during the elongation process of simian virus 40 DNA replication.
    J Virol. 1987 Feb;61(2):411-8 PMID: 3027371
  22. DNA helicase II of Escherichia coli. Characterization of the single-stranded DNA-dependent NTPase and helicase activities.
    J Biol Chem. 1987 Feb 15;262(5):2066-76 PMID: 3029063
  23. Simian virus 40 (SV40) DNA replication: SV40 large T antigen unwinds DNA containing the SV40 origin of replication.
    Proc Natl Acad Sci U S A. 1987 Jan;84(1):16-20 PMID: 3025851
  24. T-antigen-DNA polymerase alpha complex implicated in simian virus 40 DNA replication.
    Mol Cell Biol. 1986 Nov;6(11):4077-87 PMID: 3025630
  25. Inhibition of simian virus 40 DNA replication by specific modification of T-antigen with oxidized ATP.
    J Biol Chem. 1986 Nov 5;261(31):14369-72 PMID: 3021737
  26. DNA binding site for a factor(s) required to initiate simian virus 40 DNA replication.
    Proc Natl Acad Sci U S A. 1986 Mar;83(6):1646-50 PMID: 3006062
  27. Properties of the simian virus 40 (SV40) large T antigens encoded by SV40 mutants with deletions in gene A.
    J Virol. 1986 Feb;57(2):539-46 PMID: 3003386
  28. Simian virus 40 origin DNA-binding domain on large T antigen.
    J Virol. 1986 Jan;57(1):50-64 PMID: 3001365
  29. Consensus topography in the ATP binding site of the simian virus 40 and polyomavirus large tumor antigens.
    Proc Natl Acad Sci U S A. 1987 Jun;84(12):4026-30 PMID: 3035562
  30. Purification and functional properties of simian virus 40 large and small T antigens overproduced in insect cells.
    J Virol. 1988 Aug;62(8):2951-9 PMID: 2969056
  31. Two separable functional domains of simian virus 40 large T antigen: carboxyl-terminal region of simian virus 40 large T antigen is required for efficient capsid protein synthesis.
    J Virol. 1985 Feb;53(2):415-24 PMID: 2982029
  32. Genetic and biochemical analysis of transformation-competent, replication-defective simian virus 40 large T antigen mutants.
    J Virol. 1985 Jan;53(1):120-7 PMID: 2981330
  33. Identification and biochemical analysis of DNA replication-defective large T antigens from SV40-transformed cells.
    Virology. 1985 Oct 30;146(2):188-202 PMID: 2996217
  34. T antigen and template requirements for SV40 DNA replication in vitro.
    EMBO J. 1985 Nov;4(11):2933-9 PMID: 2998767
  35. An immunoaffinity purification procedure for SV40 large T antigen.
    Virology. 1985 Jul 15;144(1):88-100 PMID: 2998049
  36. Seventeen base pairs of region I encode a novel tripartite binding signal for SV40 T antigen.
    Cell. 1985 Sep;42(2):539-48 PMID: 2992803
  37. The RAD3 gene of Saccharomyces cerevisiae encodes a DNA-dependent ATPase.
    Proc Natl Acad Sci U S A. 1987 Sep;84(17):6045-9 PMID: 2957691
  38. Initiation of eukaryotic DNA replication in vitro.
    Annu Rev Cell Biol. 1989;5:197-245 PMID: 2557059
  39. Large T-antigen mutants define multiple steps in the initiation of simian virus 40 DNA replication.
    J Virol. 1989 Oct;63(10):4181-8 PMID: 2550664
  40. Preferential binding of simian virus 40 T-antigen dimers to origin region I.
    J Virol. 1989 Jul;63(7):2901-7 PMID: 2542602
  41. Sequence independent duplex DNA opening reaction catalysed by SV40 large tumor antigen.
    Nucleic Acids Res. 1989 Jan 11;17(1):93-106 PMID: 2536153
  42. Helicase, DNA-binding, and immunological properties of replication-defective simian virus 40 mutant T antigens.
    J Virol. 1989 Feb;63(2):912-8 PMID: 2536112
  43. ATPase activity of the UvrA and UvrAB protein complexes of the Escherichia coli UvrABC endonuclease.
    Nucleic Acids Res. 1989 Jun 12;17(11):4145-59 PMID: 2525700
  44. Temperature-sensitive mutants identify crucial structural regions of simian virus 40 large T antigen.
    J Virol. 1989 Oct;63(10):4426-30 PMID: 2778883
  45. Gel retardation at low pH resolves trp repressor-DNA complexes for quantitative study.
    Proc Natl Acad Sci U S A. 1988 Feb;85(4):975-9 PMID: 3277190
  46. Mutations in the phosphorylation sites of simian virus 40 (SV40) T antigen alter its origin DNA-binding specificity for sites I or II and affect SV40 DNA replication activity.
    J Virol. 1988 May;62(5):1598-605 PMID: 3357207
  47. Minimal size plasmids containing an M13 origin for production of single-strand transducing particles.
    J Mol Appl Genet. 1984;2(6):507-17 PMID: 6099398
  48. Monoclonal antibodies specific for simian virus 40 tumor antigens.
    J Virol. 1981 Sep;39(3):861-9 PMID: 6169844
  49. Monoclonal antibodies against simian virus 40 T antigens: evidence for distinct sublcasses of large T antigen and for similarities among nonviral T antigens.
    J Virol. 1980 Jun;34(3):752-63 PMID: 6155477
  50. DNA-dependent nucleoside 5'-triphosphatase activity of the gene 4 protein of bacteriophage T7.
    J Biol Chem. 1983 Nov 25;258(22):14009-16 PMID: 6139375
  51. Simian virus 40 large T-antigen point mutants that are defective in viral DNA replication but competent in oncogenic transformation.
    Mol Cell Biol. 1984 Jun;4(6):1125-33 PMID: 6330530
  52. Mutant of simian virus 40 large T-antigen that is defective for viral DNA synthesis, but competent for transformation of cultured rat cells.
    J Virol. 1982 Jun;42(3):854-64 PMID: 6285001
  53. Binding of a simian virus 40 T antigen-related protein to DNA.
    J Mol Biol. 1981 Jan 25;145(3):471-88 PMID: 6267291
  54. The nucleotide binding site detected by affinity labeling in the large T proteins of polyoma and SV40 viruses is distinct from their ATPase catalytic site.
    J Biol Chem. 1984 Dec 25;259(24):15196-203 PMID: 6096361
  55. Base composition-independent hybridization in tetramethylammonium chloride: a method for oligonucleotide screening of highly complex gene libraries.
    Proc Natl Acad Sci U S A. 1985 Mar;82(6):1585-8 PMID: 3856838
  56. Activation of ATPase activity of simian virus 40 large T antigen by the covalent affinity analog of ATP, fluorosulfonylbenzoyl 5'-adenosine.
    J Virol. 1990 Oct;64(10):4939-47 PMID: 1697910
  57. Mapping of helicase and helicase substrate-binding domains on simian virus 40 large T antigen.
    J Virol. 1990 May;64(5):2014-20 PMID: 2157869
  58. Four major sequence elements of simian virus 40 large T antigen coordinate its specific and nonspecific DNA binding.
    J Virol. 1990 May;64(5):1973-83 PMID: 2157865
  59. Binding and unwinding--how T antigen engages the SV40 origin of DNA replication.
    Cell. 1990 Jan 26;60(2):181-4 PMID: 2153460
  60. Three domains in the simian virus 40 core origin orchestrate the binding, melting, and DNA helicase activities of T antigen.
    J Virol. 1990 Feb;64(2):509-18 PMID: 2153220
  61. Overexpression of proteins in eukaryotes.
    Methods Enzymol. 1990;182:112-32 PMID: 2179662
  62. Use of monoclonal antibodies as probes of simian virus 40 T antigen ATPase activity.
    J Biol Chem. 1981 Nov 25;256(22):11854-8 PMID: 6170639
  63. T antigen repression of SV40 early transcription from two promoters.
    Cell. 1981 Dec;27(3 Pt 2):603-13 PMID: 6101224
  64. SV40 T antigen binds directly to the large subunit of purified DNA polymerase alpha.
    EMBO J. 1990 Oct;9(10):3329-36 PMID: 1698613
  65. Simian virus 40 large T antigen untwists DNA at the origin of DNA replication.
    J Biol Chem. 1991 Mar 15;266(8):5062-71 PMID: 1848235
  66. Linker insertion mutants of simian virus 40 large T antigen that show trans-dominant interference with wild-type large T antigen map to multiple sites within the T-antigen gene.
    J Virol. 1989 Nov;63(11):4777-86 PMID: 2552152
  67. Structural and enzymatic studies of the T4 DNA replication system. II. ATPase properties of the polymerase accessory protein complex.
    J Biol Chem. 1989 Jul 25;264(21):12717-29 PMID: 2526128
  68. ATP-dependent formation of a specialized nucleoprotein structure by simian virus 40 (SV40) large tumor antigen at the SV40 replication origin.
    Proc Natl Acad Sci U S A. 1987 Dec;84(24):8981-5 PMID: 2827164
  69. ATP stimulates the binding of simian virus 40 (SV40) large tumor antigen to the SV40 origin of replication.
    Proc Natl Acad Sci U S A. 1988 Jan;85(1):64-8 PMID: 2829177
  70. Expression of simian virus 40 T antigen in Escherichia coli: localization of T-antigen origin DNA-binding domain to within 129 amino acids.
    J Virol. 1988 Jun;62(6):1999-2006 PMID: 2835505
  71. Analysis of mechanisms controlling the interactions of SV40 large T antigen with the SV40 ORI region.
    Virology. 1988 Aug;165(2):527-38 PMID: 2841799
  72. Sequential early stages in the in vitro initiation of replication at the origin of the Escherichia coli chromosome.
    J Biol Chem. 1988 May 25;263(15):7124-30 PMID: 2835363
  73. Inhibition of SV40 replication in simian cells by specific pBR322 DNA sequences.
    Nature. 1981 Sep 3;293(5827):79-81 PMID: 6267479
Article Info
Journal
Journal of virology
Abbr.
J Virol
ISSN
0022-538X
Published
1991-09-00
Pages
4973-84
Language
English
Region
United States
NLM ID
0113724
PMCID
PMC248960
Subset
IM
Grants
NCI NIH HHS · CA-38069 · United States
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