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PMID: 8709250 Published · ppublish English Journal Article Research Support, Non-U.S. Gov't

Multivariate analysis of human immunodeficiency virus type 1 neutralization data.

Journal of virology ·Vol. 70 ·No. 9 ·1996-09-00 ·Pages 6235-43

Nyambi PN, Nkengasong J, Lewi P, Andries K, Janssens W, Fransen K, Heyndrickx L, Piot P, van der Groen G

Abstract

We report on the use of spectral map analysis of the inter- and intraclade neutralization data of 14 sera of human immunodeficiency virus type 1 (HIV-1)-infected individuals and 16 primary isolates, representing genetic clades A to H in group M and group O. This multivariate analysis has been used previously to study the interaction between drugs and receptors and between viruses and antiviral compounds. The analysis reveals the existence of neutralization clusters, not correlated with the known genetic clades. The structural factors that have been identified may correlate with the most important neutralization epitopes. Three key primary HIV-1 isolates, which allow discrimination of sera that are likely or unlikely to neutralize primary isolates from most of the genetic clades, were identified. Our method of analysis will facilitate the evaluation as well as the design of suitable HIV-1 vaccines, which induce high-titer interclade cross-neutralizing antibodies.

MeSH Terms
Acquired Immunodeficiency Syndrome/blood,immunology Algorithms Antibody Specificity HIV Antibodies/blood HIV Infections/blood,immunology HIV-1/classification,genetics,immunology HIV-2/immunology Humans Multivariate Analysis Neutralization Tests Simian Immunodeficiency Virus/immunology
Chemicals
HIV Antibodies
Authors & Affiliations
9 authors, click to expand affiliations / ORCID
Nyambi P N
Institute of Tropical Medicine, Antwerp, Belgium.
Nkengasong J
Lewi P
Andries K
Janssens W
Fransen K
Heyndrickx L
Piot P
van der Groen G
References (29)
29 references, click to expand
  1. Phylogenetic analysis of gag genes from 70 international HIV-1 isolates provides evidence for multiple genotypes.
    AIDS. 1993 Jun;7(6):769-80 PMID: 8363755
  2. Immunochemical analysis of the gp120 surface glycoprotein of human immunodeficiency virus type 1: probing the structure of the C4 and V4 domains and the interaction of the C4 domain with the V3 loop.
    J Virol. 1993 Aug;67(8):4785-96 PMID: 7687303
  3. Genomic cloning and complete sequence analysis of a highly divergent African human immunodeficiency virus isolate.
    J Virol. 1994 Mar;68(3):1586-96 PMID: 8107220
  4. Native oligomeric human immunodeficiency virus type 1 envelope glycoprotein elicits diverse monoclonal antibody reactivities.
    J Virol. 1994 May;68(5):3015-26 PMID: 7512157
  5. Molecular phylogeny of part of the env gene of HIV-1 strains isolated in Côte d'Ivoire.
    AIDS. 1994 Jan;8(1):21-6 PMID: 8011235
  6. V3 region polymorphisms in HIV-1 from Brazil: prevalence of subtype B strains divergent from North American/European prototype and detection of subtype F.
    AIDS Res Hum Retroviruses. 1994 May;10(5):569-76 PMID: 7522493
  7. Genetic diversity of the envelope glycoprotein from human immunodeficiency virus type 1 isolates of African origin.
    J Virol. 1995 Jan;69(1):263-71 PMID: 7983718
  8. Cross-neutralizing antibodies to HIV-1ANT70 and HIV-1IIIB in sera of African and Belgian HIV-1-infected individuals.
    AIDS. 1994 Aug;8(8):1089-96 PMID: 7986404
  9. Genetic and phylogenetic analysis of env subtypes G and H in central Africa.
    AIDS Res Hum Retroviruses. 1994 Jul;10(7):877-9 PMID: 7986593
  10. Presence in India of HIV type 1 similar to North American strains.
    AIDS Res Hum Retroviruses. 1994 Aug;10(8):1039-41 PMID: 7811535
  11. Genotypic subtypes of HIV-1 in Cameroon.
    AIDS. 1994 Oct;8(10):1405-12 PMID: 7818811
  12. Identification of an env G subtype and heterogeneity of HIV-1 strains in the Russian Federation and Belarus.
    AIDS. 1994 Dec;8(12):1649-55 PMID: 7888112
  13. Genetic variation of HIV type 1 in four World Health Organization-sponsored vaccine evaluation sites: generation of functional envelope (glycoprotein 160) clones representative of sequence subtypes A, B, C, and E. WHO Network for HIV Isolation and Characterization.
    AIDS Res Hum Retroviruses. 1994 Nov;10(11):1359-68 PMID: 7888189
  14. Presence of multiple genetic subtypes of human immunodeficiency virus type 1 proviruses in Uganda.
    AIDS Res Hum Retroviruses. 1994 Nov;10(11):1543-50 PMID: 7888209
  15. Subgroup G HIV type 1 isolates from Nigeria.
    AIDS Res Hum Retroviruses. 1994 Nov;10(11):1581-3 PMID: 7888214
  16. Genetic analysis of human immunodeficiency virus type 1 strains from patients in Cyprus: identification of a new subtype designated subtype I.
    J Virol. 1995 Oct;69(10):6122-30 PMID: 7666516
  17. Structural modulations of the envelope gp120 glycoprotein of human immunodeficiency virus type 1 upon oligomerization and differential V3 loop epitope exposure of isolates displaying distinct tropism upon virion-soluble receptor binding.
    J Virol. 1995 Oct;69(10):6191-8 PMID: 7545244
  18. Reduced capacity of antibodies from patients infected with human immunodeficiency virus type 1 (HIV-1) group O to neutralize primary isolates of HIV-1 group M viruses.
    J Infect Dis. 1995 Nov;172(5):1228-37 PMID: 7594658
  19. Inter- and intraclade neutralization of human immunodeficiency virus type 1: genetic clades do not correspond to neutralization serotypes but partially correspond to gp120 antigenic serotypes.
    J Virol. 1996 Jan;70(1):427-44 PMID: 8523556
  20. Quantitative analysis of serum neutralization of human immunodeficiency virus type 1 from subtypes A, B, C, D, E, F, and I: lack of direct correlation between neutralization serotypes and genetic subtypes and evidence for prevalent serum-dependent infectivity enhancement.
    J Virol. 1996 Jan;70(1):445-58 PMID: 8523557
  21. Spectral mapping, a technique for classifying biological activity profiles of chemical compounds.
    Arzneimittelforschung. 1976;26(7):1295-1300 PMID: 1036914
  22. Variable and conserved neutralization antigens of human immunodeficiency virus.
    Nature. 1986 Dec 11-17;324(6097):572-5 PMID: 2431324
  23. Linear versus conformational variation of V3 neutralization domains of HIV-1 during experimental and natural infection.
    AIDS. 1989;3 Suppl 1:S119-23 PMID: 2482053
  24. Two groups of rhinoviruses revealed by a panel of antiviral compounds present sequence divergence and differential pathogenicity.
    J Virol. 1990 Mar;64(3):1117-23 PMID: 2154596
  25. Epitopes recognized by the neutralizing antibodies of an HIV-1-infected individual.
    J Immunol. 1990 Jun 15;144(12):4641-7 PMID: 1693639
  26. Conformational epitope on gp120 important in CD4 binding and human immunodeficiency virus type 1 neutralization identified by a human monoclonal antibody.
    J Virol. 1991 Jan;65(1):489-93 PMID: 1702163
  27. Identification of human neutralization-inducing regions of the human immunodeficiency virus type 1 envelope glycoproteins.
    Proc Natl Acad Sci U S A. 1992 Jan 15;89(2):461-5 PMID: 1370580
  28. Antibodies to discontinuous or conformationally sensitive epitopes on the gp120 glycoprotein of human immunodeficiency virus type 1 are highly prevalent in sera of infected humans.
    J Virol. 1993 Feb;67(2):863-75 PMID: 7678308
  29. Characterization of human immunodeficiency virus type 1 isolates from children in Romania: identification of a new envelope subtype.
    J Infect Dis. 1994 Feb;169(2):281-8 PMID: 8106761
Article Info
Journal
Journal of virology
Abbr.
J Virol
ISSN
0022-538X
Published
1996-09-00
Pages
6235-43
Language
English
Region
United States
NLM ID
0113724
PMCID
PMC190648
Subset
IM
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