Home LiteratureArticle Details
PMID: 8599940 Published · ppublish English Journal Article Research Support, U.S. Gov't, P.H.S.

Probes of chromatin accessibility in the Drosophila bithorax complex respond differently to Polycomb-mediated repression.

The EMBO journal ·Vol. 15 ·No. 3 ·1996-02-01 ·Pages 569-80

McCall K, Bender W

Abstract

The Polycomb group (PcG) of genes are required for maintenance of the repressed state of the homeotic genes in Drosophila. There are similarities between the PcG repression and mating-type silencing in yeast or heterochromatic position effect in Drosophila, which suggest that PcG repression may involve a highly compacted chromatin structure. To test for such a structure, heterologous DNA- binding proteins were used as probes for DNA accessibility in Drosophila embryos. Binding sites for the yeast transcriptional activator GAL4 and for bacteriophage T7 RNA polymerase were inserted into the bithorax (bx) regulatory region of the endogenous Ultrabithorax (Ubx) gene, which is regulated by the PcG. Ubiquitously expressed GAL4 protein directs transcription through its binding sites only in the posterior segments where the bx region is active. The block to GAL4 activation in the more anterior segments is dependent on Polycomb (Pc) function. In contrast, T7 RNA polymerase can transcribe from its target promoter in all segments of the embryo. Thus, Pc-mediated repression blocks activated polymerase II transcription, but does not simply exclude all proteins.

MeSH Terms
Animals Chromatin/genetics DNA-Binding Proteins/genetics DNA-Directed RNA Polymerases/genetics Drosophila/embryology,genetics Drosophila Proteins Female Fungal Proteins/genetics Genes, Homeobox Genes, Insect Genes, Regulator Male Molecular Probes Mutation Nucleosomes/genetics Polycomb Repressive Complex 1 Promoter Regions, Genetic Proteins/genetics Saccharomyces cerevisiae Proteins Transcription Factors Viral Proteins
Chemicals
Chromatin DNA-Binding Proteins Drosophila Proteins Fungal Proteins GAL4 protein, S cerevisiae Molecular Probes Nucleosomes Pc protein, Drosophila Proteins Saccharomyces cerevisiae Proteins Transcription Factors Viral Proteins Polycomb Repressive Complex 1 bacteriophage T7 RNA polymerase DNA-Directed RNA Polymerases
Authors & Affiliations
2 authors, click to expand affiliations / ORCID
McCall K
Department of Biological Chemistry and Molecular Pharmacology, Harvard Medical School, Boston, MA 02115, USA.
Bender W
References (71)
71 references, click to expand
  1. Imprinting a determined state into the chromatin of Drosophila.
    Trends Genet. 1990 Dec;6(12):416-21 PMID: 1982376
  2. cis-acting DNA sequence requirements for P-element transposition.
    Genes Dev. 1989 May;3(5):729-38 PMID: 2545527
  3. Targeting of an enhancer trap to vestigial.
    Dev Biol. 1994 Sep;165(1):290-3 PMID: 8088446
  4. Comparison of germline mosaics of genes in the Polycomb group of Drosophila melanogaster.
    Genetics. 1995 May;140(1):231-43 PMID: 7635288
  5. Sharp anterior boundary of homeotic gene expression conferred by the fushi tarazu protein.
    EMBO J. 1992 Oct;11(10):3653-61 PMID: 1356761
  6. Ten different Polycomb group genes are required for spatial control of the abdA and AbdB homeotic products.
    Development. 1992 Feb;114(2):493-505 PMID: 1350533
  7. Targeted gene replacement in Drosophila via P element-induced gap repair.
    Science. 1991 Sep 6;253(5024):1110-7 PMID: 1653452
  8. Structure and stability of mRNA synthesized by vaccinia virus-encoded bacteriophage T7 RNA polymerase in mammalian cells. Importance of the 5' untranslated leader.
    J Mol Biol. 1989 Mar 20;206(2):333-48 PMID: 2497259
  9. Identification of Polycomb and trithorax group responsive elements in the regulatory region of the Drosophila homeotic gene Sex combs reduced.
    Genetics. 1995 Feb;139(2):797-814 PMID: 7713433
  10. Locking in stable states of gene expression: transcriptional control during Drosophila development.
    Curr Opin Cell Biol. 1995 Jun;7(3):376-85 PMID: 7662368
  11. Position effect variegation and chromatin proteins.
    Bioessays. 1992 Sep;14(9):605-12 PMID: 1365916
  12. abdA expression in Drosophila embryos.
    Genes Dev. 1990 Sep;4(9):1573-87 PMID: 1979297
  13. Enhancer traps in the Drosophila bithorax complex mark parasegmental domains.
    Genetics. 1994 Oct;138(2):387-99 PMID: 7828822
  14. Overcoming telomeric silencing: a trans-activator competes to establish gene expression in a cell cycle-dependent way.
    Genes Dev. 1994 May 15;8(10):1133-46 PMID: 7926719
  15. n-Butyrate causes histone modification in HeLa and Friend erythroleukaemia cells.
    Nature. 1977 Aug 4;268(5619):462-4 PMID: 268489
  16. Ectopic expression in Drosophila.
    Methods Cell Biol. 1994;44:635-54 PMID: 7707973
  17. Targeting bacteriophage T7 RNA polymerase to the mammalian cell nucleus.
    Gene. 1988 Sep 7;68(2):259-66 PMID: 3065146
  18. In vitro transcription through nucleosomes by T7 RNA polymerase.
    EMBO J. 1992 May;11(5):1941-7 PMID: 1582422
  19. White gene expression, repressive chromatin domains and homeotic gene regulation in Drosophila.
    Bioessays. 1994 Aug;16(8):549-56 PMID: 7916186
  20. Gene expression. Chromatin contract to silence.
    Nature. 1990 Mar 15;344(6263):193-4 PMID: 2107401
  21. Butyrate suppression of position-effect variegation in Drosophila melanogaster.
    Mol Gen Genet. 1980;178(2):465-9 PMID: 6771490
  22. Gene inactivation in Drosophila mediated by the Polycomb gene product or by position-effect variegation does not involve major changes in the accessibility of the chromatin fibre.
    Mol Gen Genet. 1994 May 25;243(4):453-62 PMID: 7911223
  23. Nucleosome disruption by transcription factor binding in yeast.
    Science. 1993 Dec 3;262(5139):1563-6 PMID: 8248805
  24. Facilitated binding of GAL4 and heat shock factor to nucleosomal templates: differential function of DNA-binding domains.
    Genes Dev. 1991 Jul;5(7):1285-98 PMID: 2065977
  25. Altered distributions of Ultrabithorax transcripts in extra sex combs mutant embryos of Drosophila.
    EMBO J. 1985 Dec 1;4(12):3259-64 PMID: 2419125
  26. Enhancer point mutation results in a homeotic transformation in Drosophila.
    Science. 1994 May 13;264(5161):968-71 PMID: 7909957
  27. Histone acetylation and control of gene expression.
    J Cell Sci. 1991 May;99 ( Pt 1):13-20 PMID: 1757496
  28. Complete nucleotide sequence of bacteriophage T7 DNA and the locations of T7 genetic elements.
    J Mol Biol. 1983 Jun 5;166(4):477-535 PMID: 6864790
  29. Nucleosome disruption and enhancement of activator binding by a human SW1/SNF complex.
    Nature. 1994 Aug 11;370(6489):477-81 PMID: 8047169
  30. Homeotic gene function in the muscles of Drosophila larvae.
    EMBO J. 1986 Sep;5(9):2321-2329 PMID: 16453704
  31. The bx region enhancer, a distant cis-control element of the Drosophila Ubx gene and its regulation by hunchback and other segmentation genes.
    EMBO J. 1991 Jun;10(6):1415-25 PMID: 1902784
  32. Characterization of two RNAs transcribed from the cis-regulatory region of the abd-A domain within the Drosophila bithorax complex.
    Proc Natl Acad Sci U S A. 1990 May;87(9):3259-63 PMID: 1692133
  33. Novel transcripts from the Ultrabithorax domain of the bithorax complex.
    Genes Dev. 1987 May;1(3):307-22 PMID: 3119423
  34. A positive role for histone acetylation in transcription factor access to nucleosomal DNA.
    Cell. 1993 Jan 15;72(1):73-84 PMID: 8422685
  35. A new homeotic mutation in the Drosophila bithorax complex removes a boundary separating two domains of regulation.
    EMBO J. 1990 Aug;9(8):2579-85 PMID: 1973385
  36. Silencers and domains of generalized repression.
    Science. 1994 Jun 17;264(5166):1768-71 PMID: 8209257
  37. Spatial regulation of Antennapedia and bithorax gene expression by the Polycomb locus in Drosophila.
    Cell. 1986 Mar 14;44(5):739-48 PMID: 3081265
  38. Nucleosome arrays inhibit both initiation and elongation of transcripts by bacteriophage T7 RNA polymerase.
    J Mol Biol. 1992 Jan 5;223(1):67-78 PMID: 1731087
  39. Localization of nanos RNA controls embryonic polarity.
    Cell. 1992 Oct 16;71(2):301-13 PMID: 1423595
  40. GAL4 activates transcription in Drosophila.
    Nature. 1988 Apr 28;332(6167):853-6 PMID: 3128741
  41. Position effect variegation in Drosophila is associated with an altered chromatin structure.
    Genes Dev. 1995 May 15;9(10):1263-77 PMID: 7758950
  42. Histone Gene Multiplicity and Position Effect Variegation in DROSOPHILA MELANOGASTER.
    Genetics. 1983 Oct;105(2):327-44 PMID: 17246163
  43. Eukaryotic transient-expression system based on recombinant vaccinia virus that synthesizes bacteriophage T7 RNA polymerase.
    Proc Natl Acad Sci U S A. 1986 Nov;83(21):8122-6 PMID: 3095828
  44. Silencers, silencing, and heritable transcriptional states.
    Microbiol Rev. 1992 Dec;56(4):543-60 PMID: 1480108
  45. The regulation of the cell cycle during Drosophila embryogenesis: the transition to polyteny.
    Development. 1991 Aug;112(4):997-1008 PMID: 1935703
  46. Examination of DNA sequences undergoing chromatin conformation changes at a variegating breakpoint in Drosophila melanogaster.
    Genetica. 1993;92(1):33-41 PMID: 7909301
  47. How eukaryotic transcriptional activators work.
    Nature. 1988 Oct 20;335(6192):683-9 PMID: 3050531
  48. The immunoglobulin mu enhancer core establishes local factor access in nuclear chromatin independent of transcriptional stimulation.
    Genes Dev. 1993 Oct;7(10):2016-32 PMID: 8406005
  49. A gene complex controlling segmentation in Drosophila.
    Nature. 1978 Dec 7;276(5688):565-70 PMID: 103000
  50. Active genes in budding yeast display enhanced in vivo accessibility to foreign DNA methylases: a novel in vivo probe for chromatin structure of yeast.
    Genes Dev. 1992 Feb;6(2):186-96 PMID: 1737615
  51. Discrete Polycomb-binding sites in each parasegmental domain of the bithorax complex.
    Development. 1995 Jun;121(6):1681-9 PMID: 7600985
  52. Efficient copying of nonhomologous sequences from ectopic sites via P-element-induced gap repair.
    Mol Cell Biol. 1994 Mar;14(3):1613-25 PMID: 8114699
  53. The Polycomb protein shares a homologous domain with a heterochromatin-associated protein of Drosophila.
    Proc Natl Acad Sci U S A. 1991 Jan 1;88(1):263-7 PMID: 1898775
  54. P-element-induced interallelic gene conversion of insertions and deletions in Drosophila melanogaster.
    Mol Cell Biol. 1993 Nov;13(11):7006-18 PMID: 8413290
  55. Drosophila Polycomb-group regulated chromatin inhibits the accessibility of a trans-activator to its target DNA.
    EMBO J. 1995 Nov 15;14(22):5660-71 PMID: 8521823
  56. brahma: a regulator of Drosophila homeotic genes structurally related to the yeast transcriptional activator SNF2/SWI2.
    Cell. 1992 Feb 7;68(3):561-72 PMID: 1346755
  57. High-frequency P element loss in Drosophila is homolog dependent.
    Cell. 1990 Aug 10;62(3):515-25 PMID: 2165865
  58. A stable genomic source of P element transposase in Drosophila melanogaster.
    Genetics. 1988 Mar;118(3):461-70 PMID: 2835286
  59. Characterization of the yeast SWI1, SWI2, and SWI3 genes, which encode a global activator of transcription.
    Cell. 1992 Feb 7;68(3):573-83 PMID: 1339306
  60. Distinguishing between mechanisms of eukaryotic transcriptional activation with bacteriophage T7 RNA polymerase.
    Cell. 1987 Sep 25;50(7):1047-55 PMID: 3304661
  61. Homeogene expression patterns and chromosomal imprinting.
    Trends Genet. 1990 Jul;6(7):208-12 PMID: 1975137
  62. Chromosomal structure is altered by mutations that suppress or enhance position effect variegation.
    Chromosoma. 1990 Oct;99(6):391-400 PMID: 2125551
  63. A P element chimera containing captured genomic sequences was recovered at the vestigial locus in Drosophila following targeted transposition.
    Genetics. 1992 Aug;131(4):917-27 PMID: 1325388
  64. Targeted transposition at the vestigial locus of Drosophila melanogaster.
    Genetics. 1994 Dec;138(4):1127-35 PMID: 7896095
  65. Enhancer-trap targeting at the Broad-Complex locus of Drosophila melanogaster.
    Genes Dev. 1995 May 1;9(9):1137-48 PMID: 7744254
  66. Regulation and function of the Drosophila segmentation gene fushi tarazu.
    Cell. 1987 Sep 11;50(6):963-74 PMID: 2887293
  67. Spatially ordered transcription of regulatory DNA in the bithorax complex of Drosophila.
    Development. 1989 Oct;107(2):321-9 PMID: 2632227
  68. A Polycomb response element in the Ubx gene that determines an epigenetically inherited state of repression.
    EMBO J. 1994 Jun 1;13(11):2553-64 PMID: 7912192
  69. The Drosophila Polycomb-group gene Enhancer of zeste contains a region with sequence similarity to trithorax.
    Mol Cell Biol. 1993 Oct;13(10):6357-66 PMID: 8413234
  70. Mechanisms of heritable gene repression during development of Drosophila.
    Curr Opin Cell Biol. 1993 Dec;5(6):999-1005 PMID: 7907493
  71. Initiation of transcription on nucleosomal templates.
    Proc Natl Acad Sci U S A. 1989 Dec;86(24):9817-21 PMID: 2690074
Article Info
Journal
The EMBO journal
Abbr.
EMBO J
ISSN
0261-4189
Published
1996-02-01
Pages
569-80
Language
English
Region
England
NLM ID
8208664
PMCID
PMC449975
Subset
IM
Analysis Services
Analysis Services

Contact

No. 2 Wenbo Road, Zhangqiu District, Jinan, Shandong

Qilu Normal University · Genelibs Bioinformatics Lab

750 Shunhua Rd, Jinan

2F, Bldg F, University Science Park

Tel: 0531-88819269

WeChat Official Account

Follow our WeChat subscription account for real-time updates and the latest in medical and biological research.


Business Email

E-mail: product@genelibs.com