Home LiteratureArticle Details
PMID: 6363901 Published · ppublish English Comparative Study Journal Article Research Support, U.S. Gov't, Non-P.H.S. Research Support, U.S. Gov't, P.H.S. Review

Detailed analysis of the higher-order structure of 16S-like ribosomal ribonucleic acids.

Microbiological reviews ·Vol. 47 ·No. 4 ·1983-12-00 ·Pages 621-69

Woese CR, Gutell R, Gupta R, Noller HF

Abstract

暂无摘要

MeSH Terms
Bacteria/genetics Base Sequence Escherichia coli/genetics Molecular Weight Nucleic Acid Conformation RNA, Ribosomal Species Specificity
Chemicals
RNA, Ribosomal
Authors & Affiliations
4 authors, click to expand affiliations / ORCID
Woese C R
Gutell R
Gupta R
Noller H F
References (87)
87 references, click to expand
  1. The phylogeny of prokaryotes.
    Science. 1980 Jul 25;209(4455):457-63 PMID: 6771870
  2. The topography of the 5' end of 16-S RNA in the presence and absence of ribosomal proteins S4 and S20.
    Eur J Biochem. 1980 Feb;103(3):439-46 PMID: 6766862
  3. Sequence of the 16S Ribosomal RNA from Halobacterium volcanii, an Archaebacterium.
    Science. 1983 Aug 12;221(4611):656-9 PMID: 17787735
  4. Protection of ribosomal RNA from kethoxal in polyribosomes. Implication of specific sites in ribosome function.
    J Mol Biol. 1983 Jan 5;163(1):27-46 PMID: 6834429
  5. THE SYNTHESIS OF PROTEINS UPON RIBOSOMES.
    Bull Soc Chim Biol (Paris). 1964;46:1399-425 PMID: 14270536
  6. Positions of proteins S6, S11 and S15 in the 30 S ribosomal subunit of Escherichia coli.
    J Mol Biol. 1981 Dec 15;153(3):739-60 PMID: 7040690
  7. Mechanism of kasugamycin resistance in Escherichia coli.
    Nat New Biol. 1972 Jan 5;235(53):6-9 PMID: 4336392
  8. Secondary structure comparisons between small subunit ribosomal RNA molecules from six different species.
    Nucleic Acids Res. 1981 Aug 11;9(15):3621-40 PMID: 7024918
  9. Bisulfite-induced C changed to U transitions in yeast alanine tRNA.
    J Biol Chem. 1977 Apr 25;252(8):2551-9 PMID: 404292
  10. Functional modification of 16S ribosomal RNA by kethoxal.
    Proc Natl Acad Sci U S A. 1972 Nov;69(11):3115-8 PMID: 4564202
  11. The nucleotide sequence of the 5S ribosomal RNA from a photobacterium.
    J Mol Evol. 1975 Jun 9;5(1):35-46 PMID: 1177325
  12. The complete nucleotide sequence of the ribosomal 16-S RNA from Excherichia coli. Experimental details and cistron heterogeneities.
    Eur J Biochem. 1979 Oct 15;100(2):399-410 PMID: 389624
  13. Ribosome structure: localization of 3' end of RNA in small subunit by immunoelectronmicroscopy.
    Proc Natl Acad Sci U S A. 1979 Aug;76(8):3769-73 PMID: 386348
  14. The evolution of cellular tape reading processes and macromolecular complexity.
    Brookhaven Symp Biol. 1972;23:326-65 PMID: 5047200
  15. Specific inactivation of 16S ribosomal RNA induced by colicin E3 in vivo.
    Proc Natl Acad Sci U S A. 1971 May;68(5):964-8 PMID: 4930244
  16. Binding sites for ribosomal proteins S8 and S15 in the 16 S RNA of Escherichia coli.
    Biochim Biophys Acta. 1979 Jul 26;563(2):422-31 PMID: 380655
  17. High-resolution proton magnetic resonance study of the secondary structure of the 3'-terminal 49-nucleotide fragment of 16S rRNA from Escherichia coli.
    Proc Natl Acad Sci U S A. 1977 Mar;74(3):1028-31 PMID: 322143
  18. A unique secondary folding pattern for 5S RNA corresponds to the lowest energy homologous secondary structure in 17 different prokaryotes.
    Nucleic Acids Res. 1981 Apr 24;9(8):1885-904 PMID: 6165963
  19. Factor-free ("non-enzymic") and factor-dependent systems of translation of polyuridylic acid by Escherichia coli ribosomes.
    J Mol Biol. 1976 Mar 15;101(4):537-52 PMID: 772221
  20. Structure and function of the bacterial ribosome.
    Annu Rev Biochem. 1977;46:173-200 PMID: 71014
  21. Identification of a site of psoralen crosslinking in E. coli 16S ribosomal RNA.
    Nucleic Acids Res. 1982 May 11;10(9):2839-49 PMID: 6285311
  22. Nucleotide sequence of Xenopus laevis 18S ribosomal RNA inferred from gene sequence.
    Nature. 1981 May 21;291(5812):205-8 PMID: 7015146
  23. Phylogenetic structure of the prokaryotic domain: the primary kingdoms.
    Proc Natl Acad Sci U S A. 1977 Nov;74(11):5088-90 PMID: 270744
  24. Segments of the 16 S RNA located on the surface of the 30 S subunits of Escherichia coli ribosomes.
    FEBS Lett. 1980 Jul 28;116(2):265-8 PMID: 6773801
  25. Wheat embryo mitochondrial 18S ribosomal RNA: evidence for its prokaryotic nature.
    Nucleic Acids Res. 1977 Mar;4(3):663-71 PMID: 866186
  26. The structure of the yeast ribosomal RNA genes. I. The complete nucleotide sequence of the 18S ribosomal RNA gene from Saccharomyces cerevisiae.
    Nucleic Acids Res. 1980 Dec 11;8(23):5779-94 PMID: 7008030
  27. How ribosomes select initiator regions in mRNA: base pair formation between the 3' terminus of 16S rRNA and the mRNA during initiation of protein synthesis in Escherichia coli.
    Proc Natl Acad Sci U S A. 1975 Dec;72(12):4734-8 PMID: 1107998
  28. [Nucleotide sequence of the gene for the mitochondrial 15S ribosomal RNA of yeast].
    C R Seances Acad Sci D. 1980 Dec 8;291(12):933-6 PMID: 6261980
  29. Location and characteristics of ribosomal protein binding sites in the 16S RNA of Escherichia coli.
    Nucleic Acids Res. 1975 Feb;2(2):279-302 PMID: 1091919
  30. Structure-function relations in E. coli 16S RNA.
    Cell. 1983 May;33(1):19-24 PMID: 6380748
  31. Ribosome structure: localization of N6,N6-dimethyladenosine by electron microscopy of a ribosome-antibody complex.
    Proc Natl Acad Sci U S A. 1977 Apr;74(4):1468-72 PMID: 323854
  32. Distinctive sequence of human mitochondrial ribosomal RNA genes.
    Nature. 1980 Jul 31;286(5772):460-7 PMID: 6157106
  33. Complete sequence of bovine mitochondrial DNA. Conserved features of the mammalian mitochondrial genome.
    J Mol Biol. 1982 Apr 25;156(4):683-717 PMID: 7120390
  34. Mutations of bacteriophage T7 that affect initiation of synthesis of the gene 0.3 protein.
    Proc Natl Acad Sci U S A. 1978 Jun;75(6):2741-5 PMID: 275843
  35. Precise localization and nucleotide sequence of the two mouse mitochondrial rRNA genes and three immediately adjacent novel tRNA genes.
    Cell. 1980 Nov;22(1 Pt 1):157-70 PMID: 7428037
  36. Characterization of the regions from E. coli 16 S RNA covalently linked to ribosomal proteins S4 and S20 after ultraviolet irradiation.
    FEBS Lett. 1977 Jun 15;78(2):261-6 PMID: 885249
  37. Electron microscopic determination of the binding sites of ribosomal proteins S4 and S8 on 16S RNA.
    Proc Natl Acad Sci U S A. 1978 Jan;75(1):270-4 PMID: 343105
  38. Molecular mechanics of translation: a reciprocating ratchet mechanism.
    Nature. 1970 May 30;226(5248):817-20 PMID: 5444622
  39. Secondary structure of the large subunit ribosomal RNA from Escherichia coli, Zea mays chloroplast, and human and mouse mitochondrial ribosomes.
    Nucleic Acids Res. 1981 Jul 24;9(14):3287-306 PMID: 7024913
  40. A "bulged" double helix in a RNA-protein contact site.
    Proc Natl Acad Sci U S A. 1981 Dec;78(12):7331-5 PMID: 7038676
  41. Ribosomal discrimination of tRNAs.
    Nat New Biol. 1971 Dec 29;234(52):261-4 PMID: 4943838
  42. Topography of rna in the ribosome localization of the 16 s rna 5' end by immune electron microscopy.
    J Mol Biol. 1982 Aug 25;159(4):637-50 PMID: 6183435
  43. Covalent crosslinking of tRNA1Val to 16S RNA at the ribosomal P site: identification of crosslinked residues.
    Proc Natl Acad Sci U S A. 1982 Sep;79(18):5450-4 PMID: 6813860
  44. [Isolation of highly purified ribonuclease from cobra (Naja oxiana) venom].
    Biokhimiia. 1975 May-Jun;40(3):578-83 PMID: 173425
  45. The 3' terminus of 16S rRNA: secondary structure and interaction with ribosomal protein S1.
    Nucleic Acids Res. 1979 Dec 20;7(8):2399-418 PMID: 392471
  46. Structure of yeast phenylalanine tRNA at 3 A resolution.
    Nature. 1974 Aug 16;250(467):546-51 PMID: 4602655
  47. Mechanism of ribosomal subunit association: discrimination of specific sites in 16 S RNA essential for association activity.
    J Mol Biol. 1979 Jun 5;130(4):433-49 PMID: 384003
  48. Gene organization and primary structure of a ribosomal RNA operon from Escherichia coli.
    J Mol Biol. 1981 May 15;148(2):107-27 PMID: 7028991
  49. Localization of a binding site for ribosomal protein S8 within the 16S ribosomal ribonucleic acid of Escherichia coli.
    J Bacteriol. 1973 Jul;115(1):82-7 PMID: 4577755
  50. Improved estimation of secondary structure in ribonucleic acids.
    Nat New Biol. 1973 Nov 14;246(150):40-1 PMID: 4519026
  51. Structure and function of ribosomes and their molecular components.
    Cold Spring Harb Symp Quant Biol. 1969;34:49-61 PMID: 4909519
  52. Ribosomal protein S4 is an internal protein: Localization by immunoelectron microscopy on protein-deficient subribosomal particles.
    Proc Natl Acad Sci U S A. 1982 Sep;79(17):5184-8 PMID: 6752941
  53. Effect of colicin E3 upon the 30S ribosomal subunit of Escherichia coli.
    Proc Natl Acad Sci U S A. 1971 May;68(5):959-63 PMID: 4930243
  54. Localization of the 3' end of Escherichia coli 16 S RNA by electron microscopy of antibody-labelled subunits.
    J Mol Biol. 1979 Oct 9;133(4):501-15 PMID: 395313
  55. Mutants of Escherichia coli lacking ribosomal protein L1.
    J Mol Biol. 1981 Jul 15;149(4):553-78 PMID: 6171646
  56. Secondary structure model for 23S ribosomal RNA.
    Nucleic Acids Res. 1981 Nov 25;9(22):6167-89 PMID: 7031608
  57. Three-dimensional tertiary structure of yeast phenylalanine transfer RNA.
    Science. 1974 Aug 2;185(4149):435-40 PMID: 4601792
  58. Nucleotide sequences of Escherichia coli 16-S RNA associated with ribosomal proteins S7, S9, S10, S14 and S19.
    Eur J Biochem. 1975 Aug 1;56(1):23-34 PMID: 1100389
  59. A general secondary-structure model for procaryotic and eucaryotic RNAs from the small ribosomal subunits.
    Eur J Biochem. 1981 Dec;120(3):487-95 PMID: 6174326
  60. Secondary structure of 16S ribosomal RNA.
    Science. 1981 Apr 24;212(4493):403-11 PMID: 6163215
  61. The nucleotide sequence of the 5S rRNA from the archaebacterium Thermoplasma acidophilum.
    Nucleic Acids Res. 1981 Feb 25;9(4):965-70 PMID: 7232209
  62. The structure of the RNA binding site of ribosomal proteins S8 and S15.
    J Biol Chem. 1979 May 25;254(10):3873-8 PMID: 108264
  63. Sequence analysis of specific areas of the 16S and 23S ribosomal RNAs.
    Nature. 1968 Jul 20;219(5151):236-8 PMID: 4299552
  64. The 3'-terminal sequence of Escherichia coli 16S ribosomal RNA: complementarity to nonsense triplets and ribosome binding sites.
    Proc Natl Acad Sci U S A. 1974 Apr;71(4):1342-6 PMID: 4598299
  65. Characterization of an RNA "binding site" for a specific ribosomal protein of Escherichia coli.
    Mol Gen Genet. 1972;114(1):1-8 PMID: 4552495
  66. The complete nucleotide sequence of 16S ribosomal RNA gene from tobacco chloroplasts.
    Gene. 1982 Feb;17(2):213-8 PMID: 7044901
  67. Topography of 16 S RNA in 30 S subunits and 70 S ribosomes accessibility to cobra venom ribonuclease.
    J Mol Biol. 1981 Nov 15;152(4):699-721 PMID: 6174733
  68. Primary and secondary structures of Escherichia coli MRE 600 23S ribosomal RNA. Comparison with models of secondary structure for maize chloroplast 23S rRNA and for large portions of mouse and human 16S mitochondrial rRNAs.
    Nucleic Acids Res. 1981 Sep 11;9(17):4303-24 PMID: 6170936
  69. 5S RNA secondary structure.
    Nature. 1975 Aug 7;256(5517):505-7 PMID: 808733
  70. An experimentally-derived model for the secondary structure of the 16S ribosomal RNA from Escherichia coli.
    Nucleic Acids Res. 1980 Jun 11;8(11):2377-95 PMID: 6160459
  71. Secondary structure model for bacterial 16S ribosomal RNA: phylogenetic, enzymatic and chemical evidence.
    Nucleic Acids Res. 1980 May 24;8(10):2275-93 PMID: 6159576
  72. Higher order structure in the 3'-minor domain of small subunit ribosomal RNAs from a gram negative bacterium, a gram positive bacterium and a eukaryote.
    J Mol Biol. 1983 Sep 5;169(1):249-79 PMID: 6194304
  73. Globin mRNA sequences: analysis of base pairing and evolutionary implications.
    Cold Spring Harb Symp Quant Biol. 1978;42 Pt 2:985-1002 PMID: 277330
  74. Identification of the paromomycin-resistance mutation in the 15 S rRNA gene of yeast mitochondria.
    J Biol Chem. 1982 May 25;257(10):5921-8 PMID: 6279619
  75. Altered topography of 16S RNA in the inactive form of Escherichia coli 30S ribosomal subunits.
    Biochemistry. 1978 Feb 21;17(4):587-93 PMID: 341969
  76. Primary structural relationship of p16 to m16 ribosomal RNA.
    Nat New Biol. 1971 Jul 14;232(28):48-9 PMID: 4935733
  77. An enzymatic approach for localization of oligodeoxyribonucleotide binding sites on RNA. Application to studying rRNA topography.
    FEBS Lett. 1981 Aug 31;131(2):253-6 PMID: 6271574
  78. Stimulation of "non-enzymic" translocation in ribosomes by p-chloromercuribenzoate.
    FEBS Lett. 1971 Oct 1;17(2):324-326 PMID: 11946059
  79. Protection of specific sites in 16 S RNA from chemical modification by association of 30 S and 50 S ribosomes.
    J Mol Biol. 1977 Jan 5;109(1):131-49 PMID: 839533
  80. Location of ribosomal protein binding sites on 16S ribosomal RNA.
    Proc Natl Acad Sci U S A. 1972 May;69(5):1282-6 PMID: 4556459
  81. The determination of the primary structure of the 16S ribosomal RNA of Escherichia coli. III. Further studies.
    Biochimie. 1975;57(6-7):711-48 PMID: 1106773
  82. Feedback regulation of ribosomal protein gene expression in Escherichia coli: structural homology of ribosomal RNA and ribosomal protein MRNA.
    Proc Natl Acad Sci U S A. 1980 Dec;77(12):7084-8 PMID: 7012833
  83. Studies on the environment of protein S7 within the 30-S subunit Escherichia coli ribosomes.
    Eur J Biochem. 1976 Apr 15;64(1):77-89 PMID: 776616
  84. Crystal structure of yeast phenylalanine transfer RNA. II. Structural features and functional implications.
    J Mol Biol. 1978 Aug 25;123(4):631-60 PMID: 357743
  85. Prediction of pairing schemes in RNA molecules-loop contributions and energy of wobble and non-wobble pairs.
    Biochimie. 1979;61(10):1133-50 PMID: 394764
  86. Ribosome structure. Localization of 7-methylguanosine in the small subunits of Escherichia coli and chloroplast ribosomes by immunoelectron microscopy.
    J Biol Chem. 1982 Aug 25;257(16):9822-9 PMID: 6179936
  87. Topography of 16S RNA in 30S ribosomal subunits. Nucleotide sequences and location of sites of reaction with kethoxal.
    Biochemistry. 1974 Nov 5;13(23):4694-703 PMID: 4371816
Article Info
Journal
Microbiological reviews
Abbr.
Microbiol Rev
ISSN
0146-0749
Published
1983-12-00
Pages
621-69
Language
English
Region
United States
NLM ID
7806086
PMCID
PMC283711
Subset
IM
Analysis Services
Analysis Services

Contact

No. 2 Wenbo Road, Zhangqiu District, Jinan, Shandong

Qilu Normal University · Genelibs Bioinformatics Lab

750 Shunhua Rd, Jinan

2F, Bldg F, University Science Park

Tel: 0531-88819269

WeChat Official Account

Follow our WeChat subscription account for real-time updates and the latest in medical and biological research.


Business Email

E-mail: product@genelibs.com