Home LiteratureArticle Details
PMID: 6316258 Published · ppublish English Journal Article Research Support, Non-U.S. Gov't

Nucleotide sequence of thrC and of the transcription termination region of the threonine operon in Escherichia coli K12.

Nucleic acids research ·Vol. 11 ·No. 21 ·1983-11-11 ·Pages 7331-45

Parsot C, Cossart P, Saint-Girons I, Cohen GN

Abstract

The entire threonine operon (thrABC) of Escherichia coli K12 was cloned, and the nucleotide sequence of the thrC gene and its 3' flanking region was determined. The translation initiation codon was identified by sequencing the N-terminal part of threonine synthase, the thrC gene product. Analysis of the deduced protein sequence (428 amino acid residues) revealed a region of homology, 35 amino acids long, between the three enzymes encoded by the threonine operon. During examination of the nucleotide sequence of the 1045 base pair fragments following the thrC gene, we detected some potential rho-independent and rho-dependent transcription termination signals.

MeSH Terms
Amino Acid Sequence Bacterial Proteins/genetics Base Sequence DNA Restriction Enzymes Escherichia coli/genetics Genes Genes, Bacterial Operon Plasmids Species Specificity Threonine/genetics Transcription, Genetic
Chemicals
Bacterial Proteins Threonine DNA Restriction Enzymes
Authors & Affiliations
4 authors, click to expand affiliations / ORCID
Parsot C
Cossart P
Saint-Girons I
Cohen G N
References (44)
44 references, click to expand
  1. Regulatory sequences involved in the promotion and termination of RNA transcription.
    Annu Rev Genet. 1979;13:319-53 PMID: 94251
  2. Origins of metabolic diversity: evolutionary divergence by sequence repetition.
    Proc Natl Acad Sci U S A. 1979 Aug;76(8):3996-4000 PMID: 291059
  3. Proteolytic cleavage fo native DNA polymerase into two different catalytic fragments. Influence of assay condtions on the change of exonuclease activity and polymerase activity accompanying cleavage.
    Eur J Biochem. 1971 Oct 14;22(3):371-81 PMID: 4942147
  4. A novel intercistronic regulatory element of prokaryotic operons.
    Nature. 1982 Aug 19;298(5876):760-2 PMID: 7110312
  5. Cleavage of structural proteins during the assembly of the head of bacteriophage T4.
    Nature. 1970 Aug 15;227(5259):680-5 PMID: 5432063
  6. Isoleucine and valine metabolism of Escherichia coli. XV. Biochemical properties of mutants resistant to thiaisoleucine.
    J Bacteriol. 1968 May;95(5):1672-9 PMID: 4297021
  7. Homoserine kinase from Escherichia coli K12.
    Eur J Biochem. 1976 Mar 1;62(3):519-26 PMID: 177283
  8. Threonine locus of Escherichia coli K-12: genetic structure and evidence for an operon.
    J Bacteriol. 1974 Jun;118(3):990-8 PMID: 4364333
  9. DNA sequence of the E. coli trpR gene and prediction of the amino acid sequence of Trp repressor.
    Nucleic Acids Res. 1980 Apr 11;8(7):1551-60 PMID: 7001368
  10. The tyrT locus: termination and processing of a complex transcript.
    Cell. 1981 Nov;26(3 Pt 1):305-14 PMID: 7034960
  11. A device coupled to a modified sequenator for the automated conversion of anilinothiazolinones into PTH amino acids.
    Anal Biochem. 1976 Oct;75(2):621-33 PMID: 791001
  12. 3'-end labeling of DNA with [alpha-32P]cordycepin-5'-triphosphate.
    Gene. 1980 Jul;10(2):177-83 PMID: 6248422
  13. Tandem termination sites in the tryptophan operon of Escherichia coli.
    Proc Natl Acad Sci U S A. 1981 May;78(5):2913-7 PMID: 6265923
  14. On the Evolution of Biochemical Syntheses.
    Proc Natl Acad Sci U S A. 1945 Jun;31(6):153-7 PMID: 16578152
  15. Isoleucine and valine metabolism of Escherichia coli. XVI. Pattern of multivalent repression in strain K-12.
    J Bacteriol. 1968 May;95(5):1680-4 PMID: 4870282
  16. Construction and expression of a hybrid plasmid containing the Escherichia coli thrA and thrB genes.
    Mol Gen Genet. 1979 Aug;175(1):39-44 PMID: 390305
  17. Revised structure of aspartokinase I-homoserine dehydrogenase I of Escherichia coli K12. Evidence for four identical subunits.
    Eur J Biochem. 1972 Aug 4;28(4):507-19 PMID: 4562989
  18. Gene sequence of the lambda receptor, an outer membrane protein of E. coli K12.
    Cell. 1981 Dec;27(3 Pt 2):507-14 PMID: 6086106
  19. The threonine-sensitive homoserine dehydrogenase and aspartokinase activities of Escherichia coli K 12. Intra and intersubunit interactions between the catalytic regions of the bifunctional enzyme.
    Eur J Biochem. 1973 Oct 5;38(2):325-35 PMID: 4149354
  20. Nucleotide sequence and expression of Escherichia coli trpR, the structural gene for the trp aporepressor.
    Proc Natl Acad Sci U S A. 1980 Dec;77(12):7117-21 PMID: 7012834
  21. Correlation between the abundance of Escherichia coli transfer RNAs and the occurrence of the respective codons in its protein genes.
    J Mol Biol. 1981 Feb 15;146(1):1-21 PMID: 6167728
  22. Nucleotide sequence of the thrB gene of E. coli, and its two adjacent regions; the thrAB and thrBC junctions.
    Nucleic Acids Res. 1981 Jan 24;9(2):339-47 PMID: 6259626
  23. Complete nucleotide sequence of the E. coli glyA gene.
    Nucleic Acids Res. 1983 Apr 11;11(7):2065-75 PMID: 6300791
  24. The use of thin acrylamide gels for DNA sequencing.
    FEBS Lett. 1978 Mar 1;87(1):107-10 PMID: 631324
  25. Threonine synthetase of Bacillus subtilis. The nature of an associated dehydratase activity.
    J Biol Chem. 1973 Feb 10;248(3):1032-44 PMID: 4630852
  26. A dye-buoyant-density method for the detection and isolation of closed circular duplex DNA: the closed circular DNA in HeLa cells.
    Proc Natl Acad Sci U S A. 1967 May;57(5):1514-21 PMID: 5231757
  27. A simple method for making new transducing lines of coliphage lambda.
    Mol Gen Genet. 1975;137(2):101-7 PMID: 1186657
  28. Escherichia coli glutaminyl-tRNA synthetase. I. Isolation and DNA sequence of the glnS gene.
    J Biol Chem. 1982 Oct 10;257(19):11639-43 PMID: 6288695
  29. Genetics of resistance to colicins in Escherichia coli K-12: cross-resistance among colicins of group A.
    J Bacteriol. 1975 Jul;123(1):102-17 PMID: 1095546
  30. Regulation of the threonine operon: tandem threonine and isoleucine codons in the control region and translational control of transcription termination.
    Proc Natl Acad Sci U S A. 1979 Apr;76(4):1706-10 PMID: 287010
  31. DNA sequence change of a deletion mutation abolishing attenuation control of the threonine operon of E. coli K12.
    Mol Gen Genet. 1982;188(3):455-8 PMID: 6298575
  32. Azide-dependent mutants in E. coli K12.
    Nature. 1976 Nov 4;264(5581):90-2 PMID: 794730
  33. A rapid alkaline extraction procedure for screening recombinant plasmid DNA.
    Nucleic Acids Res. 1979 Nov 24;7(6):1513-23 PMID: 388356
  34. Initiation, pausing, and termination of transcription in the threonine operon regulatory region of Escherichia coli.
    J Biol Chem. 1982 Apr 10;257(7):3896-904 PMID: 6277952
  35. Construction and characterization of new cloning vehicles. II. A multipurpose cloning system.
    Gene. 1977;2(2):95-113 PMID: 344137
  36. Polynucleotide kinase exchange reaction: quantitave assay for restriction endonuclease-generated 5'-phosphoroyl termini in DNA.
    J Biol Chem. 1977 May 25;252(10):3176-84 PMID: 16886
  37. Stimulation by cyclic adenosine monophosphate of plasmid deoxyribonucleic acid replication and catabolite repression of the plasmid deoxyribonucleic acid-protein relaxation complex.
    J Bacteriol. 1973 May;114(2):577-91 PMID: 4350343
  38. Characterization of a defective lambda bacteriophage transducing the threonine operon of Escherichia coli K12.
    Mol Gen Genet. 1974;132(1):41-8 PMID: 4607525
  39. A rapid and sensitive method for the quantitation of microgram quantities of protein utilizing the principle of protein-dye binding.
    Anal Biochem. 1976 May 7;72:248-54 PMID: 942051
  40. High resolution two-dimensional electrophoresis of proteins.
    J Biol Chem. 1975 May 25;250(10):4007-21 PMID: 236308
  41. Translation of Drosophila melanogaster sequences in Escherichia coli.
    Proc Natl Acad Sci U S A. 1977 Nov;74(11):5041-5 PMID: 412196
  42. Sequencing end-labeled DNA with base-specific chemical cleavages.
    Methods Enzymol. 1980;65(1):499-560 PMID: 6246368
  43. A new method for sequencing DNA.
    Proc Natl Acad Sci U S A. 1977 Feb;74(2):560-4 PMID: 265521
  44. Multivalent repression in the biosynthesis of threonine in Salmonella typhimurium and Escherichia coli.
    Biochem Biophys Res Commun. 1963 Feb 6;10:277-82 PMID: 13959617
Article Info
Journal
Nucleic acids research
Abbr.
Nucleic Acids Res
ISSN
0305-1048
Published
1983-11-11
Pages
7331-45
Language
English
Region
England
NLM ID
0411011
PMCID
PMC326486
Subset
IM
Databases
GENBANK
J01706, J01707, J01708, J01709, V00360, X00092
Analysis Services
Analysis Services

Contact

No. 2 Wenbo Road, Zhangqiu District, Jinan, Shandong

Qilu Normal University · Genelibs Bioinformatics Lab

750 Shunhua Rd, Jinan

2F, Bldg F, University Science Park

Tel: 0531-88819269

WeChat Official Account

Follow our WeChat subscription account for real-time updates and the latest in medical and biological research.


Business Email

E-mail: product@genelibs.com