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PMID: 6304722 Published · ppublish English Journal Article Research Support, Non-U.S. Gov't Research Support, U.S. Gov't, P.H.S.

Location and nucleotide sequence of the transfer origin of the broad host range plasmid RK2.

Guiney DG, Yakobson E

Abstract

The origin of plasmid DNA transfer, oriT, has been localized on RK2, a conjugative drug-resistance plasmid of the IncP group with a very broad host range in gram-negative bacteria. The transfer origin is contained in a 760-base-pair Hae II restriction fragment that maps in the same region as the single-strand nick made by the RK2 relaxation complex. The functional oriT was subcloned as a 112-base-pair Hpa II fragment, and the DNA sequence of this region was determined. The dominant structural feature of the oriT sequence is a 19-base-pair inverted repeat, with 15 of the 19 bases able to form pairs in a hairpin structure. This inverted repeat may be the recognition site for the relaxation complex proteins, which nick the plasmid DNA molecule and initiate the transfer process.

MeSH Terms
Base Sequence Crosses, Genetic DNA Restriction Enzymes DNA, Recombinant/metabolism Escherichia coli/genetics Nucleic Acid Conformation Plasmids
Chemicals
DNA, Recombinant DNA Restriction Enzymes
Authors & Affiliations
2 authors, click to expand affiliations / ORCID
Guiney D G
Yakobson E
References (29)
29 references, click to expand
  1. Strand selection during bacterial mating.
    Cold Spring Harb Symp Quant Biol. 1968;33:647-50 PMID: 4892001
  2. Strand-specific nick in open circular R-factor deoxyribonucleic acid: attachment of the linear strand to a proteinaceous cellular component.
    J Bacteriol. 1973 Apr;114(1):300-8 PMID: 4572716
  3. Properties of the relaxation complexes of supercoiled deoxyribonucleic acid and protein of the R plasmids R64, R28K, and R6K.
    J Bacteriol. 1974 Oct;120(1):545-8 PMID: 4608091
  4. Relaxation complexes of plasmid DNA and protein. I. Strand-specific association of protein and DNA in the relaxed complexes of plasmids ColE1 and ColE2.
    J Biol Chem. 1975 Nov 25;250(22):8785-9 PMID: 1102543
  5. Relaxation complexes of plasmid DNA and protein. II. Characterization of the proteins associated with the unrelaxed and relaxed complexes of plasmid ColE1.
    J Biol Chem. 1975 Nov 25;250(22):8790-5 PMID: 1102544
  6. Relaxation complexes of poasmid DNA and protein. III. Association of protein with the 5' terminus of the broken DNA strand in the relaxed complex of plasmid ColE1.
    J Biol Chem. 1975 Nov 25;250(22):8796-803 PMID: 1102545
  7. cis-Dominant, transfer-deficient mutants of the Escherichia coli K-12 F sex factor.
    J Bacteriol. 1976 Jan;125(1):233-47 PMID: 1107307
  8. A new method for sequencing DNA.
    Proc Natl Acad Sci U S A. 1977 Feb;74(2):560-4 PMID: 265521
  9. Unidirectional replication of the P-group plasmid RK2.
    Biochim Biophys Acta. 1977 Sep 6;478(1):109-13 PMID: 329885
  10. Conjugal transfer system of plasmid RP4: analysis by transposon 7 insertion.
    J Bacteriol. 1978 Jan;133(1):43-52 PMID: 338595
  11. ColE1 plasmid mobility and relaxation complex.
    Nature. 1978 Jul 20;274(5668):259-61 PMID: 210387
  12. Determination of restriction sites and the nucleotide sequence surrounding the relaxation site of ColE1.
    J Mol Biol. 1978 Oct 5;124(4):601-39 PMID: 712849
  13. Complete nucleotide sequence of the Escherichia coli plasmid pBR322.
    Cold Spring Harb Symp Quant Biol. 1979;43 Pt 1:77-90 PMID: 383387
  14. The DNA-protein relaxation complex of the plasmid RK2: location of the site-specific nick in the region of the proposed origin of transfer.
    Mol Gen Genet. 1979 Oct 3;176(2):183-9 PMID: 393953
  15. Conjugal transmission of plasmids.
    Annu Rev Genet. 1979;13:99-125 PMID: 395897
  16. Relationship of group P1 plasmids revealed by heteroduplex experiments: RP1, RP4, R68 and RK2 are identical.
    J Gen Microbiol. 1979 Oct;114(2):341-8 PMID: 120408
  17. Characterisation of an in vivo system for nicking at the origin of conjugal DNA transfer of the sex factor F.
    J Mol Biol. 1980 Jan 15;136(2):129-50 PMID: 6154798
  18. Location of two relaxation nick sites in R6K and single sites in pSC101 and RSF1010 close to origins of vegetative replication: implication for conjugal transfer of plasmid deoxyribonucleic acid.
    J Bacteriol. 1980 Dec;144(3):923-32 PMID: 6254952
  19. The inverted repeat as a recognizable structural feature in supercoiled DNA molecules.
    Proc Natl Acad Sci U S A. 1980 Nov;77(11):6468-72 PMID: 6256738
  20. Analysis of chromosome mobilization using hybrids between plasmid RP4 and a fragment of bacteriophage lambda carrying IS1.
    Plasmid. 1981 May;5(3):267-76 PMID: 6267631
  21. Cruciform structures in palindromic DNA are favored by DNA supercoiling.
    J Mol Biol. 1982 Apr 5;156(2):229-43 PMID: 6283098
  22. Plasmid ColE1 conjugal mobility: the nature of bom, a region required in cis for transfer.
    Mol Gen Genet. 1982;185(2):344-51 PMID: 7045589
  23. Structural properties of the beta origin of replication of plasmid R6K.
    J Biol Chem. 1983 Apr 10;258(7):4083-90 PMID: 6300075
  24. Cloning, mutation, and location of the F origin of conjugal transfer.
    EMBO J. 1982;1(6):747-53 PMID: 6329701
  25. Asymmetric transfer of DNA strands in bacterial conjugation.
    Cold Spring Harb Symp Quant Biol. 1968;33:651-8 PMID: 4892002
  26. Supercoiled circular DNA-protein complex in Escherichia coli: purification and induced conversion to an opern circular DNA form.
    Proc Natl Acad Sci U S A. 1969 Apr;62(4):1159-66 PMID: 4894690
  27. Helix formation by d(TA) oligomers. II. Analysis of the helix-coli transitions of linear and circular oligomers.
    J Mol Biol. 1970 Feb 28;48(1):145-71 PMID: 5448587
  28. Estimation of secondary structure in ribonucleic acids.
    Nature. 1971 Apr 9;230(5293):362-7 PMID: 4927725
  29. Location of the origin of transfer of the sex factor F.
    J Bacteriol. 1972 Nov;112(2):773-8 PMID: 4565418
Article Info
Journal
Proceedings of the National Academy of Sciences of the United States of America
Abbr.
Proc Natl Acad Sci U S A
ISSN
0027-8424
Published
1983-06-00
Pages
3595-8
Language
English
Region
United States
NLM ID
7505876
PMCID
PMC394096
Subset
IM
Grants
NIGMS NIH HHS · GM 28924 · United States
Databases
GENBANK
K00832
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