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PMID: 6086311 Published · ppublish English Journal Article Research Support, Non-U.S. Gov't

Assembly of transfected DNA into chromatin: structural changes in the origin-promoter-enhancer region upon replication.

The EMBO journal ·Vol. 3 ·No. 6 ·1984-06-00 ·Pages 1243-53

Cereghini S, Yaniv M

Abstract

Chimeric SV40 DNA containing only the early region, or plasmid DNA harboring the origin-promoter-enhancer region of SV40, when introduced into CV-1 or Cos-1 monkey cells by DEAE-dextran mediated transfer are rapidly assembled in a typical chromatin structure revealed by the generation of a regular 190 bp repeat ladder after micrococcal nuclease digestion. DNA replication is not required for this assembly process. Chromatin-specific DNase I hypersensitive sites are observed in the enhancer region of these minichromosomes. The pattern of the sites differs between non-replicating and post-replicated chromatin. The latter is identical to that observed in the lytic cycle. The presence of large T antigen is not sufficient for the shift in the structure of the chromatin. These experiments suggest that replication can modulate protein-DNA interactions during viral infection or upon cell differentiation.

MeSH Terms
Animals Base Sequence Cell Line Chlorocebus aethiops Chromatin/physiology DNA Replication DNA Restriction Enzymes DNA, Recombinant/analysis DNA, Viral/genetics Kidney Operon Plasmids Simian virus 40/genetics Transfection
Chemicals
Chromatin DNA, Recombinant DNA, Viral DNA Restriction Enzymes
Authors & Affiliations
2 authors, click to expand affiliations / ORCID
Cereghini S
Yaniv M
References (65)
65 references, click to expand
  1. Both early and late control sequences of SV40 and polyoma promote transcription of Escherichia coli gpt gene in transfected cells.
    EMBO J. 1982;1(8):895-900 PMID: 6329714
  2. Efficient transfer of large DNA fragments from agarose gels to diazobenzyloxymethyl-paper and rapid hybridization by using dextran sulfate.
    Proc Natl Acad Sci U S A. 1979 Aug;76(8):3683-7 PMID: 291033
  3. Murine erythroleukemia cell differentiation: relationship of globin gene expression and of prolongation of G1 to inducer effects during G1/early S.
    Proc Natl Acad Sci U S A. 1979 Sep;76(9):4511-5 PMID: 291983
  4. Structure, spacing, and phasing of nucleosomes on isolated forms of mature simian virus 40 chromosomes.
    J Biol Chem. 1980 Jan 25;255(2):771-82 PMID: 6243287
  5. Extracts of Drosophila embryos mediate chromatin assembly in vitro.
    Proc Natl Acad Sci U S A. 1979 Nov;76(11):5510-4 PMID: 118449
  6. Non-random cleavage of SV40 DNA in the compact minichromosome and free in solution by micrococcal nuclease.
    Biochem Biophys Res Commun. 1980 Jan 29;92(2):532-9 PMID: 6243943
  7. A nucleosome-free region in SV40 minichromosomes.
    Nature. 1980 May 22;285(5762):263-5 PMID: 6246449
  8. Absence of nucleosomes in a fraction of SV40 chromatin between the origin of replication and the region coding for the late leader RNA.
    Cell. 1980 May;20(1):65-73 PMID: 6248237
  9. Mapping of SV40 DNA replication origin region binding sites for the SV40 T antigen by protection against exonuclease III digestion.
    Cell. 1980 Jun;20(2):411-22 PMID: 6248243
  10. Endonuclease-sensitive regions in SV40 chromatin from cells infected with duplicated mutants.
    Virology. 1980 Jul 30;104(2):462-73 PMID: 6249038
  11. Nucleosome assembly.
    Nature. 1980 Aug 21;286(5775):763-7 PMID: 6250082
  12. The 5' ends of Drosophila heat shock genes in chromatin are hypersensitive to DNase I.
    Nature. 1980 Aug 28;286(5776):854-60 PMID: 6774262
  13. Origin-defective mutants of SV40.
    Cold Spring Harb Symp Quant Biol. 1980;44 Pt 1,:293-300 PMID: 6253143
  14. Expression of early genes of origin-defective mutants of simian virus 40.
    Proc Natl Acad Sci U S A. 1980 Jul;77(7):3898-902 PMID: 6254000
  15. Nucleosomal packaging of the thymidine kinase gene of herpes simplex virus transferred into mouse cells: an actively expressed single-copy gene.
    Proc Natl Acad Sci U S A. 1980 Sep;77(9):5079-83 PMID: 6254055
  16. A mouse globin gene promoter is functional in SV40.
    Cell. 1980 Oct;21(3):697-708 PMID: 6254665
  17. Association of simian virus 40 T antigen with replicating nucleoprotein complexes of simian virus 40.
    J Virol. 1980 Aug;35(2):320-30 PMID: 6255173
  18. Single-strand DNA binding protein from rat liver: interactions with supercoiled DNA.
    Nucleic Acids Res. 1980 Nov 11;8(21):4955-68 PMID: 6255439
  19. DNA replication and the early to late transition in adenovirus infection.
    Cell. 1980 Nov;22(2 Pt 2):523-33 PMID: 7448872
  20. Construction and analysis of simian virus 40 origins defective in tumor antigen binding and DNA replication.
    Proc Natl Acad Sci U S A. 1980 Nov;77(11):6491-5 PMID: 6256739
  21. SV40-transformed simian cells support the replication of early SV40 mutants.
    Cell. 1981 Jan;23(1):175-82 PMID: 6260373
  22. Activation of globin genes during chicken development.
    Cell. 1981 May;24(2):393-401 PMID: 7237553
  23. Quantitation of transcribing native simian virus 40 minichromosomes extracted from CV1 cells late in infection.
    J Virol. 1981 Apr;38(1):82-90 PMID: 6264116
  24. Two deletions within genes for simian virus 40 structural proteins VP2 and VP3 lead to formation of abnormal transcriptional complexes.
    J Virol. 1981 Apr;38(1):91-103 PMID: 6264117
  25. Ability of nonpermissive mouse cells to express a simian virus 40 late function(s).
    J Virol. 1981 Jun;38(3):940-51 PMID: 6264164
  26. Selection for animal cells that express the Escherichia coli gene coding for xanthine-guanine phosphoribosyltransferase.
    Proc Natl Acad Sci U S A. 1981 Apr;78(4):2072-6 PMID: 7017722
  27. Inhibition of SV40 replication in simian cells by specific pBR322 DNA sequences.
    Nature. 1981 Sep 3;293(5827):79-81 PMID: 6267479
  28. Fine structure of the origin-proximal DNAase I-hypersensitive region in wild-type and EC mutant polyoma.
    Cell. 1981 Sep;25(3):651-8 PMID: 6269751
  29. The appearance of DNase I hypersensitive sites at the 5' end of the late SV40 genes is correlated with the transcriptional switch.
    Nucleic Acids Res. 1981 Nov 25;9(22):5949-64 PMID: 6273814
  30. The SV40 72 base repair repeat has a striking effect on gene expression both in SV40 and other chimeric recombinants.
    Nucleic Acids Res. 1981 Nov 25;9(22):6047-68 PMID: 6273820
  31. Expression of a beta-globin gene is enhanced by remote SV40 DNA sequences.
    Cell. 1981 Dec;27(2 Pt 1):299-308 PMID: 6277502
  32. Efficient infection of monkey cells with DNA of simian virus 40.
    Proc Natl Acad Sci U S A. 1981 Dec;78(12):7575-8 PMID: 6278479
  33. Chromatin.
    Annu Rev Biochem. 1982;51:89-121 PMID: 6287925
  34. Chromatin changes accompany immunoglobulin kappa gene activation: a potential control region within the gene.
    Nature. 1982 Sep 30;299(5882):449-51 PMID: 6811947
  35. Host-specific activation of transcription by tandem repeats from simian virus 40 and Moloney murine sarcoma virus.
    Proc Natl Acad Sci U S A. 1982 Nov;79(21):6453-7 PMID: 6292901
  36. Fine structure of the regulatory region of simian virus 40 minichromosomes revealed by DNAase I digestion.
    J Mol Biol. 1982 Sep 15;160(2):133-46 PMID: 6294304
  37. Topography of simian virus 40 A protein-DNA complexes: arrangement of pentanucleotide interaction sites at the origin of replication.
    J Virol. 1983 Apr;46(1):143-50 PMID: 6298451
  38. Nuclease-sensitive sites in the two major intracellular simian virus 40 nucleoproteins.
    J Virol. 1983 Jun;46(3):1034-8 PMID: 6304335
  39. Negatively supercoiled simian virus 40 DNA contains Z-DNA segments within transcriptional enhancer sequences.
    Nature. 1983 Jun 23-29;303(5919):674-9 PMID: 6304535
  40. SV40 morphogenesis.
    Cold Spring Harb Symp Quant Biol. 1983;47 Pt 1:565-9 PMID: 6305569
  41. Structure and function of the promoter-enhancer region of polyoma and SV40.
    Cold Spring Harb Symp Quant Biol. 1983;47 Pt 2:935-44 PMID: 6305593
  42. DNA replication origin of polyoma virus: early proximal boundary.
    J Virol. 1983 Jul;47(1):244-8 PMID: 6306277
  43. Simian virus 40 early- and late-region promoter functions are enhanced by the 72-base-pair repeat inserted at distant locations and inverted orientations.
    Mol Cell Biol. 1983 Jun;3(6):991-9 PMID: 6308429
  44. Selective extraction of polyoma DNA from infected mouse cell cultures.
    J Mol Biol. 1967 Jun 14;26(2):365-9 PMID: 4291934
  45. Molecular weight estimation and separation of ribonucleic acid by electrophoresis in agarose-acrylamide composite gels.
    Biochemistry. 1968 Feb;7(2):668-74 PMID: 4868544
  46. Enchancement of the infectivity of simian virus 40 deoxyribonucleic acid with diethylaminoethyl-dextran.
    J Natl Cancer Inst. 1968 Aug;41(2):351-7 PMID: 4299537
  47. The cell cycle, cell lineages, and cell differentiation.
    Curr Top Dev Biol. 1972;7:229-56 PMID: 4264706
  48. DNA infectivity and the induction of host DNA synthesis with temperature-sensitive mutants of simian virus 40.
    J Virol. 1975 Jan;15(1):145-50 PMID: 163339
  49. Folding of the DNA double helix in chromatin-like structures from simian virus 40.
    Proc Natl Acad Sci U S A. 1975 May;72(5):1843-7 PMID: 168578
  50. Assembly of SV40 chromatin in a cell-free system from Xenopus eggs.
    Cell. 1977 Feb;10(2):237-43 PMID: 189936
  51. DNAase I-hypersensitive sites of chromatin.
    Cell. 1981 Dec;27(3 Pt 2):413-5 PMID: 6101195
  52. The binding site on SV40 DNA for a T antigen-related protein.
    Cell. 1978 Jan;13(1):165-79 PMID: 202398
  53. Nonhistone proteins HMG1 and HMG2 change the DNA helical structure.
    Science. 1978 Mar 24;199(4335):1345-6 PMID: 628842
  54. Selective DNA conservation and chromatin assembly after injection of SV40 DNA into Xenopus oocytes.
    Dev Biol. 1978 May;64(1):178-88 PMID: 207607
  55. SV40 viral minichromosome: preferential exposure of the origin of replication as probed by restriction endonucleases.
    Nucleic Acids Res. 1978 Oct;5(10):3469-77 PMID: 214758
  56. Assembly of newly replicated chromatin.
    Cell. 1978 Nov;15(3):969-77 PMID: 103629
  57. Sites in simian virus 40 chromatin which are preferentially cleaved by endonucleases.
    Cell. 1978 Dec;15(4):1511-8 PMID: 215331
  58. Origin of DNA replication in papovavirus chromatin is recognized by endogenous endonuclease.
    Proc Natl Acad Sci U S A. 1978 Dec;75(12):5964-8 PMID: 216004
  59. A stretch of "late" SV40 viral DNA about 400 bp long which includes the origin of replication is specifically exposed in SV40 minichromosomes.
    Cell. 1979 Feb;16(2):453-66 PMID: 222461
  60. Comparison of the DNA sequence of the Crawford small-plaque variant of polyomavirus with those of polyomaviruses A2 and strain 3.
    J Virol. 1983 Nov;48(2):472-80 PMID: 6312103
  61. The promoter-specific transcription factor Sp1 binds to upstream sequences in the SV40 early promoter.
    Cell. 1983 Nov;35(1):79-87 PMID: 6313230
  62. Chromatin structure of simian virus 40-pBR322 recombinant plasmids in COS-1 cells.
    Mol Cell Biol. 1983 Dec;3(12):2203-10 PMID: 6318089
  63. DNase I hypersensitive sites in the chromatin of human mu immunoglobulin heavy-chain genes.
    Nature. 1983 Dec 22-1984 Jan 4;306(5945):809-12 PMID: 6419125
  64. Induction of altered chromatin structures by simian virus 40 enhancer and promoter elements.
    Nature. 1984 Feb 23-29;307(5953):708-14 PMID: 6321997
  65. Transcription of Simian Virus 40 chromosomes in an extract of HeLa cells.
    EMBO J. 1982;1(1):9-14 PMID: 6325152
Article Info
Journal
The EMBO journal
Abbr.
EMBO J
ISSN
0261-4189
Published
1984-06-00
Pages
1243-53
Language
English
Region
England
NLM ID
8208664
PMCID
PMC557505
Subset
IM
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