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PMID: 3530746 Published · ppublish English Journal Article Research Support, Non-U.S. Gov't

The bacteriophage T4 gene for the small subunit of ribonucleotide reductase contains an intron.

The EMBO journal ·Vol. 5 ·No. 8 ·1986-08-00 ·Pages 2031-6

Sjöberg BM, Hahne S, Mathews CZ, Mathews CK, Rand KN, Gait MJ

Abstract

The bacteriophage T4 gene nrdB codes for the small subunit of the enzyme ribonucleotide reductase. The T4 nrdB gene was localized between 136.1 kb and 137.8 kb in the T4 genetic map according to the deduced structural homology of the protein to the amino acid sequence of its bacterial counterpart, the B2 subunit of Escherichia coli. This positions the C-terminal end of the T4 nrdB gene approximately 2 kb closer to the T4 gene 63 than earlier anticipated from genetic recombinational analyses. The most surprising feature of the T4 nrdB gene is the presence of an approximately 625 bp intron which divides the structural gene into two parts. This is the second example of a prokaryotic structural gene with an intron. The first prokaryotic intron was reported in the nearby td gene, coding for the bacteriophage T4-specific thymidylate synthase enzyme. The nucleotide sequence at the exon-intron junctions of the T4 nrdB gene is similar to that of the junctions of the T4 td gene: the anticipated exon-intron boundary at the donor site ends with a TAA stop codon and there is an ATG start codon at the putative downstream intron-exon boundary of the acceptor site. In the course of this work the denA gene of T4 (endonuclease II) was also located.

MeSH Terms
Amino Acid Sequence Base Sequence Escherichia coli/enzymology,genetics Genes Genes, Viral Macromolecular Substances Ribonucleotide Reductases/genetics T-Phages/enzymology,genetics
Chemicals
Macromolecular Substances Ribonucleotide Reductases
Authors & Affiliations
6 authors, click to expand affiliations / ORCID
Sjöberg B M
Hahne S
Mathews C Z
Mathews C K
Rand K N
Gait M J
References (40)
40 references, click to expand
  1. The primary structure of rabbit and rat prealbumin and a comparison with the tertiary structure of human prealbumin.
    J Biol Chem. 1985 May 25;260(10):6481-7 PMID: 3922975
  2. Improved M13 phage cloning vectors and host strains: nucleotide sequences of the M13mp18 and pUC19 vectors.
    Gene. 1985;33(1):103-19 PMID: 2985470
  3. The small subunit of ribonucleotide reductase is encoded by one of the most abundant translationally regulated maternal RNAs in clam and sea urchin eggs.
    J Cell Biol. 1985 Jun;100(6):1968-76 PMID: 2987274
  4. In vitro expression of the intron-containing gene for T4 phage thymidylate synthase.
    J Biol Chem. 1985 Sep 5;260(19):10680-8 PMID: 3897223
  5. Herpes simplex virus specifies two subunits of ribonucleotide reductase encoded by 3'-coterminal transcripts.
    J Virol. 1986 Mar;57(3):802-8 PMID: 2419588
  6. RNA splicing and in vivo expression of the intron-containing td gene of bacteriophage T4.
    Gene. 1986;41(1):93-102 PMID: 2422090
  7. Identification of the stable free radical tyrosine residue in ribonucleotide reductase.
    EMBO J. 1986 Aug;5(8):2037-40 PMID: 3019680
  8. Automation of the computer handling of gel reading data produced by the shotgun method of DNA sequencing.
    Nucleic Acids Res. 1982 Aug 11;10(15):4731-51 PMID: 7133997
  9. Control of pyrimidine biosynthesis by phage T4: mutants unable to catalyze the reduction of cytidine diphosphate.
    Virology. 1969 Apr;37(4):615-23 PMID: 4889429
  10. A new ribonucleotide reductase system after infection with phage T4.
    Proc Natl Acad Sci U S A. 1969 Mar;62(3):829-35 PMID: 4389750
  11. Isolation of bacteriophage T4 mutants defective in the ability to degrade host deoxyribonucleic acid.
    J Virol. 1970 Jun;5(6):700-8 PMID: 4914096
  12. Genetic location of a mutant of bacteriophage T4 deficient in the ability to induce endonuclease II.
    J Virol. 1972 Jan;9(1):184-6 PMID: 4333540
  13. Control of pyrimidine biosynthesis by phage T4. II. In vitro complementation between ribonucleotide reductase mutants.
    Virology. 1972 Mar;47(3):767-72 PMID: 4551996
  14. The temporal expression of T2r + bacteriophage genes in vivo and in vitro.
    Proc Natl Acad Sci U S A. 1972 Jul;69(7):1659-63 PMID: 4558654
  15. Ribonucleoside diphosphate reductase induced by bacteriophage T4. III. Isolation and characterization of proteins B1 and B2.
    J Biol Chem. 1975 Sep 25;250(18):7450-5 PMID: 809436
  16. Molecular cloning of fragments of bacteriophage T4 DNA.
    Mol Gen Genet. 1977 Nov 14;156(2):203-14 PMID: 600265
  17. Analysis of the accuracy and implications of simple methods for predicting the secondary structure of globular proteins.
    J Mol Biol. 1978 Mar 25;120(1):97-120 PMID: 642007
  18. Immunochemical studies of thylakoid membrane polypeptides from spinach and Chlamydomonas reinhardtii. A modified procedure for crossed immunoelectrophoresis of dodecyl sulfate.protein complexes.
    J Biol Chem. 1979 Jan 10;254(1):215-23 PMID: 102646
  19. High-molecular-weight DNA and the sedimentation coefficient: a new perspective based on DNA from T7 bacteriophage and two novel forms of T4 bacteriophage.
    J Virol. 1980 Jan;33(1):438-48 PMID: 7365870
  20. Molecular cloning of the T4 genome; organization and expression of the frd--DNA ligase region.
    Mol Gen Genet. 1980;179(2):227-39 PMID: 6258011
  21. Structure of the tyrosyl radical in bacteriophage T4-induced ribonucleotide reductase.
    J Biol Chem. 1982 Jan 10;257(1):366-9 PMID: 6273437
  22. Physical mapping of bacteriophage T4.
    Mol Gen Genet. 1981;184(2):289-99 PMID: 6276698
  23. A new pair of M13 vectors for selecting either DNA strand of double-digest restriction fragments.
    Gene. 1982 Oct;19(3):269-76 PMID: 6295880
  24. Properties of Bacteriophage T4 ribonucleoside diphosphate reductase subunits coded by nrdA and nrdB mutants.
    J Biol Chem. 1983 May 25;258(10):6064-72 PMID: 6343369
  25. Cyclin: a protein specified by maternal mRNA in sea urchin eggs that is destroyed at each cleavage division.
    Cell. 1983 Jun;33(2):389-96 PMID: 6134587
  26. Buffer gradient gels and 35S label as an aid to rapid DNA sequence determination.
    Proc Natl Acad Sci U S A. 1983 Jul;80(13):3963-5 PMID: 6575390
  27. RNA splicing: three themes with variations.
    Cell. 1983 Oct;34(3):713-6 PMID: 6354470
  28. A comprehensive set of sequence analysis programs for the VAX.
    Nucleic Acids Res. 1984 Jan 11;12(1 Pt 1):387-95 PMID: 6546423
  29. A computer program to enter DNA gel reading data into a computer.
    Nucleic Acids Res. 1984 Jan 11;12(1 Pt 2):499-503 PMID: 6546430
  30. Sequence and cloning of bacteriophage T4 gene 63 encoding RNA ligase and tail fibre attachment activities.
    EMBO J. 1984 Feb;3(2):397-402 PMID: 6370680
  31. Intervening sequence in the thymidylate synthase gene of bacteriophage T4.
    Proc Natl Acad Sci U S A. 1984 May;81(10):3049-53 PMID: 6328492
  32. Homology between two EBV early genes and HSV ribonucleotide reductase and 38K genes.
    Nucleic Acids Res. 1984 Jun 25;12(12):5087-99 PMID: 6330697
  33. Assessment of a model for intron RNA secondary structure relevant to RNA self-splicing--a review.
    Gene. 1984 Jun;28(3):277-91 PMID: 6086458
  34. Primary structure of the Escherichia coli ribonucleoside diphosphate reductase operon.
    Proc Natl Acad Sci U S A. 1984 Jul;81(14):4294-7 PMID: 6087316
  35. Cell cycle-dependent regulation of mammalian ribonucleotide reductase. The S phase-correlated increase in subunit M2 is regulated by de novo protein synthesis.
    J Biol Chem. 1984 Oct 10;259(19):11695-700 PMID: 6090444
  36. Uniformly spaced banding pattern in DNA sequencing gels by use of field-strength gradient.
    J Biochem Biophys Methods. 1984 Nov;10(1-2):83-90 PMID: 6520329
  37. Identification of the stable free radical tyrosine residue in ribonucleotide reductase. A sequence comparison.
    FEBS Lett. 1985 Apr 8;183(1):99-102 PMID: 2984052
  38. A new selective phage cloning vector, lambda 2001, with sites for XbaI, BamHI, HindIII, EcoRI, SstI and XhoI.
    Gene. 1984 Dec;32(1-2):217-24 PMID: 6099311
  39. Processing of the intron-containing thymidylate synthase (td) gene of phage T4 is at the RNA level.
    Cell. 1985 Jun;41(2):375-82 PMID: 3986907
  40. Cloned mouse ribonucleotide reductase subunit M1 cDNA reveals amino acid sequence homology with Escherichia coli and herpesvirus ribonucleotide reductases.
    J Biol Chem. 1985 Jun 10;260(11):7015-22 PMID: 2581962
Article Info
Journal
The EMBO journal
Abbr.
EMBO J
ISSN
0261-4189
Published
1986-08-00
Pages
2031-6
Language
English
Region
England
NLM ID
8208664
PMCID
PMC1167074
Subset
IM
Databases
GENBANK
M24598
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