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PMID: 3460083 Published · ppublish English Journal Article Research Support, Non-U.S. Gov't Research Support, U.S. Gov't, P.H.S.

Nucleotide sequences of mRNAs encoding Epstein-Barr virus nuclear proteins: a probable transcriptional initiation site.

Sample J, Hummel M, Braun D, Birkenbach M, Kieff E

Abstract

Three cDNA clones of the second Epstein-Barr virus nuclear antigen (EBNA2) mRNA and two of the EBNA1 mRNA were analyzed. Two EBNA2 clones begin 42 bases 3' to a promoter in the Epstein-Barr virus long internal repeat, which is likely to be the EBNA2 promoter. Surprisingly, the first splice creates an AUG at the beginning of the first of two nonoverlapping open reading frames. The second open reading frame encodes EBNA2. Two incomplete EBNA1 mRNA cDNA clones begin with parts of two of the EBNA2 exons and contain two other exons that map 19 and 59 kilobases 3' to the EBNA2 coding domain. The 3' exon of this mRNA encodes EBNA1. A model for regulation of transcription of these RNAs is presented.

MeSH Terms
Antigens, Viral/genetics Base Sequence DNA/analysis Epstein-Barr Virus Nuclear Antigens Genes, Viral Models, Genetic Promoter Regions, Genetic RNA, Messenger/genetics RNA, Viral/genetics Transcription, Genetic
Chemicals
Antigens, Viral Epstein-Barr Virus Nuclear Antigens RNA, Messenger RNA, Viral DNA
Authors & Affiliations
5 authors, click to expand affiliations / ORCID
Sample J
Hummel M
Braun D
Birkenbach M
Kieff E
References (54)
54 references, click to expand
  1. The roles of individual polyoma virus early proteins in oncogenic transformation.
    Nature. 1982 Dec 23;300(5894):713-8 PMID: 6294529
  2. Epstein-Barr virus DNA XII. A variable region of the Epstein-Barr virus genome is included in the P3HR-1 deletion.
    J Virol. 1982 Sep;43(3):979-86 PMID: 6292475
  3. Identification of Epstein-Barr nuclear antigen polypeptide in mouse and monkey cells after gene transfer with a cloned 2.9-kilobase-pair subfragment of the genome.
    Proc Natl Acad Sci U S A. 1984 Jan;81(1):43-7 PMID: 6320171
  4. Spliced RNA from the IR1-U2 region of Epstein-Barr virus: presence of an open reading frame for a repetitive polypeptide.
    EMBO J. 1984 Aug;3(8):1913-7 PMID: 6090131
  5. DNA of Epstein-Barr virus VIII: B95-8, the previous prototype, is an unusual deletion derivative.
    Cell. 1980 Nov;22(1 Pt 1):257-67 PMID: 6253079
  6. Characterization of the major Epstein-Barr virus-specific RNA in Burkitt lymphoma-derived cells.
    J Virol. 1982 Feb;41(2):376-89 PMID: 6281455
  7. Purification of biologically active globin messenger RNA by chromatography on oligothymidylic acid-cellulose.
    Proc Natl Acad Sci U S A. 1972 Jun;69(6):1408-12 PMID: 4504350
  8. RNA encoded by the IR1-U2 region of Epstein-Barr virus DNA in latently infected, growth-transformed cells.
    J Virol. 1983 May;46(2):424-33 PMID: 6188862
  9. High-frequency establishment of human immunoglobulin-producing lymphoblastoid lines from normal and malignant lymphoid tissue and peripheral blood.
    Int J Cancer. 1971 Nov 15;8(3):432-42 PMID: 5137308
  10. An EBV membrane protein expressed in immortalized lymphocytes transforms established rodent cells.
    Cell. 1985 Dec;43(3 Pt 2):831-40 PMID: 3000618
  11. Epstein-Barr virus DNA. IX. Variation among viral DNAs from producer and nonproducer infected cells.
    J Virol. 1981 May;38(2):632-48 PMID: 6264134
  12. Herpes-type virus and chromosome marker in normal leukocytes after growth with irradiated Burkitt cells.
    Science. 1967 Sep 1;157(3792):1064-5 PMID: 6036237
  13. Long internal direct repeat in Epstein-Barr virus DNA.
    J Virol. 1982 Oct;44(1):286-94 PMID: 6292491
  14. Leukocyte migration inhibition demonstrates a human T-cell response to a membrane protein expressed in latent Epstein-Barr virus infection.
    J Virol. 1986 Apr;58(1):230-2 PMID: 3005653
  15. Deletion of the nontransforming Epstein-Barr virus strain P3HR-1 causes fusion of the large internal repeat to the DSL region.
    J Virol. 1982 Sep;43(3):952-68 PMID: 6292473
  16. Initiation of translation of the cauliflower mosaic virus genome from a polycistronic mRNA: evidence from deletion mutagenesis.
    EMBO J. 1984 Dec 1;3(12):2731-6 PMID: 16453575
  17. U2 region of Epstein-Barr virus DNA may encode Epstein-Barr nuclear antigen 2.
    Proc Natl Acad Sci U S A. 1984 Dec;81(23):7632-6 PMID: 6209719
  18. Nuclear location signals in polyoma virus large-T.
    Cell. 1986 Jan 17;44(1):77-85 PMID: 3000623
  19. Point mutations define a sequence flanking the AUG initiator codon that modulates translation by eukaryotic ribosomes.
    Cell. 1986 Jan 31;44(2):283-92 PMID: 3943125
  20. Epstein-Barr virus RNA VII: size and direction of transcription of virus-specified cytoplasmic RNAs in a transformed cell line.
    Proc Natl Acad Sci U S A. 1981 Mar;78(3):1930-4 PMID: 6112750
  21. Exon mutations that affect the choice of splice sites used in processing the SV40 late transcripts.
    Nucleic Acids Res. 1985 Aug 12;13(15):5591-609 PMID: 2994004
  22. Analysis of the transcript encoding the latent Epstein-Barr virus nuclear antigen I: a potentially polycistronic message generated by long-range splicing of several exons.
    Proc Natl Acad Sci U S A. 1985 Dec;82(24):8305-9 PMID: 3001694
  23. Rapid and sensitive protein similarity searches.
    Science. 1985 Mar 22;227(4693):1435-41 PMID: 2983426
  24. Striking similarities are exhibited by two small Epstein-Barr virus-encoded ribonucleic acids and the adenovirus-associated ribonucleic acids VAI and VAII.
    Mol Cell Biol. 1981 Sep;1(9):785-96 PMID: 9279391
  25. Simple repeat sequence in Epstein-Barr virus DNA is transcribed in latent and productive infections.
    J Virol. 1982 Oct;44(1):311-20 PMID: 6292493
  26. DNA sequencing with chain-terminating inhibitors.
    Proc Natl Acad Sci U S A. 1977 Dec;74(12):5463-7 PMID: 271968
  27. One of two Epstein-Barr virus nuclear antigens contains a glycine-alanine copolymer domain.
    Proc Natl Acad Sci U S A. 1983 Sep;80(18):5665-9 PMID: 6310587
  28. Compilation and analysis of sequences upstream from the translational start site in eukaryotic mRNAs.
    Nucleic Acids Res. 1984 Jan 25;12(2):857-72 PMID: 6694911
  29. Sequences locating the 5' ends of the major simian virus 40 late mRNA forms.
    J Virol. 1983 Nov;48(2):503-20 PMID: 6194314
  30. Epidermodysplasia verruciformis-associated human papillomavirus 8: genomic sequence and comparative analysis.
    J Virol. 1986 May;58(2):626-34 PMID: 3009874
  31. A catalogue of splice junction sequences.
    Nucleic Acids Res. 1982 Jan 22;10(2):459-72 PMID: 7063411
  32. Initiation of translation at internal AUG codons in mammalian cells.
    Nature. 1984 May 3-9;309(5963):82-5 PMID: 6717585
  33. Herpes simplex virus expressing Epstein-Barr virus nuclear antigen 1.
    Virology. 1986 Jan 30;148(2):337-48 PMID: 3002038
  34. A membrane protein encoded by Epstein-Barr virus in latent growth-transforming infection.
    Proc Natl Acad Sci U S A. 1984 Nov;81(22):7207-11 PMID: 6095274
  35. Adenovirus VAI RNA facilitates the initiation of translation in virus-infected cells.
    Cell. 1984 May;37(1):291-8 PMID: 6722874
  36. Nucleotide sequence of an mRNA transcribed in latent growth-transforming virus infection indicates that it may encode a membrane protein.
    J Virol. 1984 Aug;51(2):411-9 PMID: 6086953
  37. Epstein-Barr virus RNA. VI. Viral RNA in restringently and abortively infected Raji cells.
    J Virol. 1981 May;38(2):649-60 PMID: 6165836
  38. Epstein-Barr virus (B95-8) DNA VII: molecular cloning and detailed mapping.
    Proc Natl Acad Sci U S A. 1980 May;77(5):2999-3003 PMID: 6248879
  39. DNA sequence and expression of the B95-8 Epstein-Barr virus genome.
    Nature. 1984 Jul 19-25;310(5974):207-11 PMID: 6087149
  40. Identification of Epstein-Barr virus sequences that encode a nuclear antigen expressed in latently infected lymphocytes.
    Proc Natl Acad Sci U S A. 1984 Jul;81(14):4373-7 PMID: 6087322
  41. A putative origin of replication of plasmids derived from Epstein-Barr virus is composed of two cis-acting components.
    Mol Cell Biol. 1985 Aug;5(8):1822-32 PMID: 3018528
  42. A third viral nuclear protein in lymphoblasts immortalized by Epstein-Barr virus.
    Proc Natl Acad Sci U S A. 1985 Sep;82(17):5944-8 PMID: 2994055
  43. Simple repeat array in Epstein-Barr virus DNA encodes part of the Epstein-Barr nuclear antigen.
    Science. 1983 Jun 24;220(4604):1396-8 PMID: 6304878
  44. Epstein-Barr virus RNA. V. Viral RNA in a restringently infected, growth-transformed cell line.
    J Virol. 1980 Nov;36(2):506-18 PMID: 6253674
  45. Organization of the Epstein-Barr virus DNA molecule. III. Location of the P3HR-1 deletion junction and characterization of the NotI repeat units that form part of the template for an abundant 12-O-tetradecanoylphorbol-13-acetate-induced mRNA transcript.
    J Virol. 1983 Oct;48(1):135-48 PMID: 6310141
  46. The EB virus genome in Daudi Burkitt's lymphoma cells has a deletion similar to that observed in a non-transforming strain (P3HR-1) of the virus.
    EMBO J. 1984 Apr;3(4):813-21 PMID: 6327290
  47. Specific and stable intron-factor interactions are established early during in vitro pre-mRNA splicing.
    Cell. 1985 Nov;43(1):131-42 PMID: 3000599
  48. A second nuclear protein is encoded by Epstein-Barr virus in latent infection.
    Science. 1985 Mar 8;227(4691):1238-40 PMID: 2983420
  49. Studies on the selectivity of DNA precipitation by spermine.
    Nucleic Acids Res. 1981 Oct 24;9(20):5493-504 PMID: 7029471
  50. Differences between laboratory strains of Epstein-Barr virus based on immortalization, abortive infection, and interference.
    Proc Natl Acad Sci U S A. 1974 Oct;71(10):4006-10 PMID: 4372601
  51. Transformation by Epstein-Barr virus requires DNA sequences in the region of BamHI fragments Y and H.
    J Virol. 1985 Aug;55(2):286-97 PMID: 2991556
  52. Orientation and patching of the latent infection membrane protein encoded by Epstein-Barr virus.
    J Virol. 1986 Apr;58(1):233-7 PMID: 3005654
  53. Isolation of biologically active ribonucleic acid from sources enriched in ribonuclease.
    Biochemistry. 1979 Nov 27;18(24):5294-9 PMID: 518835
  54. Transformation of foetal human keukocytes in vitro by filtrates of a human leukaemic cell line containing herpes-like virus.
    Int J Cancer. 1968 Nov 15;3(6):857-66 PMID: 4894385
Article Info
Journal
Proceedings of the National Academy of Sciences of the United States of America
Abbr.
Proc Natl Acad Sci U S A
ISSN
0027-8424
Published
1986-07-00
Pages
5096-100
Language
English
Region
United States
NLM ID
7505876
PMCID
PMC323897
Subset
IM
Grants
NCI NIH HHS · CA 07967 · United States
NCI NIH HHS · CA 17281 · United States
NCI NIH HHS · CA 19264 · United States
Databases
GENBANK
K03489, M13940, M13941
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