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PMID: 2984104 Published · ppublish English Journal Article Research Support, Non-U.S. Gov't

An estimate of unique DNA sequence heterozygosity in the human genome.

Human genetics ·Vol. 69 ·No. 3 ·1985-00-00 ·Pages 201-5

Cooper DN, Smith BA, Cooke HJ, Niemann S, Schmidtke J

Abstract

Fifteen different restriction fragment length polymorphisms (RFLPs) were detected in the human genome using 19 cloned DNA segments, derived from flow-sorted metaphase chromosomes or total genomic DNA, as hybridization probes. Since these clones were selected at random with respect to their coding potential, their analysis permitted an unbiased estimate of single-copy DNA sequence heterozygosity in the human genome. Since our estimate (h = 0.0037) is an order of magnitude higher than previous estimates derived from protein data, most of the polymorphic variation present in the genome must occur in non-coding sequences. In addition, it was confirmed that enzymes containing the dinucleotide CpG in their recognition sequence detect more polymorphic variation than those that do not contain CpG.

MeSH Terms
Base Sequence Cloning, Molecular DNA/genetics DNA Restriction Enzymes Heterozygote Humans Polymorphism, Genetic
Chemicals
DNA DNA Restriction Enzymes
Authors & Affiliations
5 authors, click to expand affiliations / ORCID
Cooper D N
Smith B A
Cooke H J
Niemann S
Schmidtke J
References (21)
21 references, click to expand
  1. Labeling deoxyribonucleic acid to high specific activity in vitro by nick translation with DNA polymerase I.
    J Mol Biol. 1977 Jun 15;113(1):237-51 PMID: 881736
  2. Eukaryotic DNA methylation.
    Hum Genet. 1983;64(4):315-33 PMID: 6194100
  3. A membrane-filter technique for the detection of complementary DNA.
    Biochem Biophys Res Commun. 1966 Jun 13;23(5):641-6 PMID: 5963888
  4. DNA methylation and the frequency of CpG in animal DNA.
    Nucleic Acids Res. 1980 Apr 11;8(7):1499-504 PMID: 6253938
  5. Higher frequencies of transitions among point mutations.
    J Mol Evol. 1977 Apr 29;9(2):159-80 PMID: 864721
  6. A strategy to reveal high-frequency RFLPs along the human X chromosome.
    Am J Hum Genet. 1984 May;36(3):546-64 PMID: 6328976
  7. Toward a complete linkage map of the human X chromosome: regional assignment of 16 cloned single-copy DNA sequences employing a panel of somatic cell hybrids.
    Am J Hum Genet. 1984 Mar;36(2):265-76 PMID: 6324578
  8. Novel bacteriophage lambda cloning vector.
    Proc Natl Acad Sci U S A. 1980 Sep;77(9):5172-6 PMID: 6254062
  9. Strategies for detecting and characterizing restriction fragment length polymorphisms (RFLP's).
    Cytogenet Cell Genet. 1982;32(1-4):58-67 PMID: 6291862
  10. Molecular genetics of human serum albumin: restriction enzyme fragment length polymorphisms and analbuminemia.
    Proc Natl Acad Sci U S A. 1983 Oct;80(19):5951-5 PMID: 6310605
  11. U1 small nuclear RNA genes are located on human chromosome 1 and are expressed in mouse-human hybrid cells.
    Mol Cell Biol. 1983 Dec;3(12):2211-20 PMID: 6197626
  12. Molecular basis of base substitution hotspots in Escherichia coli.
    Nature. 1978 Aug 24;274(5673):775-80 PMID: 355893
  13. Restriction sites containing CpG show a higher frequency of polymorphism in human DNA.
    Cell. 1984 Jan;36(1):131-8 PMID: 6198090
  14. Detection of specific sequences among DNA fragments separated by gel electrophoresis.
    J Mol Biol. 1975 Nov 5;98(3):503-17 PMID: 1195397
  15. DNA methylation in the human gamma delta beta-globin locus in erythroid and nonerythroid tissues.
    Cell. 1980 Apr;19(4):947-58 PMID: 6247075
  16. DNA sequence variants in the G gamma-, A gamma-, delta- and beta-globin genes of man.
    Cell. 1979 Sep;18(1):1-10 PMID: 509514
  17. DNA restriction fragment length polymorphisms and heterozygosity in the human genome.
    Hum Genet. 1984;66(1):1-16 PMID: 6321327
  18. Globin mRNA sequences: analysis of base pairing and evolutionary implications.
    Cold Spring Harb Symp Quant Biol. 1978;42 Pt 2:985-1002 PMID: 277330
  19. Non-randomness of base replacement in point mutation.
    J Mol Evol. 1972;1(3):334-67 PMID: 4681234
  20. Construction and characterization of genomic libraries from specific human chromosomes.
    Proc Natl Acad Sci U S A. 1982 May;79(9):2971-5 PMID: 6953442
  21. Evaluation of random cDNA clones as probes for human restriction fragment polymorphisms.
    J Mol Appl Genet. 1983;2(3):237-47 PMID: 6319525
Article Info
Journal
Human genetics
Abbr.
Hum Genet
ISSN
0340-6717
Published
1985-00-00
Pages
201-5
Language
English
Region
Germany
NLM ID
7613873
Subset
IM
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