Home LiteratureArticle Details
PMID: 21245830 Published · ppublish English Journal Article Research Support, N.I.H., Extramural Research Support, Non-U.S. Gov't Review

Non-coding RNAs as regulators of embryogenesis.

Nature reviews. Genetics ·Vol. 12 ·No. 2 ·2011-02-00 ·Pages 136-49

Pauli A, Rinn JL, Schier AF

Abstract

Non-coding RNAs (ncRNAs) are emerging as key regulators of embryogenesis. They control embryonic gene expression by several means, ranging from microRNA-induced degradation of mRNAs to long ncRNA-mediated modification of chromatin. Many aspects of embryogenesis seem to be controlled by ncRNAs, including the maternal-zygotic transition, the maintenance of pluripotency, the patterning of the body axes, the specification and differentiation of cell types and the morphogenesis of organs. Drawing from several animal model systems, we describe two emerging themes for ncRNA function: promoting developmental transitions and maintaining developmental states. These examples also highlight the roles of ncRNAs in ensuring a robust commitment to one of two possible cell fates.

MeSH Terms
Animals Embryonic Development Embryonic Stem Cells/cytology,metabolism Gene Dosage Gene Expression Regulation Humans RNA, Messenger/genetics RNA, Untranslated/genetics
Chemicals
RNA, Messenger RNA, Untranslated
Authors & Affiliations
3 authors, click to expand affiliations / ORCID
Pauli Andrea
Department of Molecular and Cellular Biology, Harvard University, Cambridge, Massachusetts 02138, USA. pauli@fas.harvard.edu
Rinn John L
Schier Alexander F
References (168)
168 references, click to expand
  1. A translation-independent role of oskar RNA in early Drosophila oogenesis.
    Development. 2006 Aug;133(15):2827-33 PMID: 16835436
  2. Long noncoding RNAs in mouse embryonic stem cell pluripotency and differentiation.
    Genome Res. 2008 Sep;18(9):1433-45 PMID: 18562676
  3. Neuron-type specific regulation of a 3'UTR through redundant and combinatorially acting cis-regulatory elements.
    RNA. 2010 Feb;16(2):349-63 PMID: 20040592
  4. A microRNA controlling left/right neuronal asymmetry in Caenorhabditis elegans.
    Nature. 2003 Dec 18;426(6968):845-9 PMID: 14685240
  5. The maternal-zygotic transition: death and birth of RNAs.
    Science. 2007 Apr 20;316(5823):406-7 PMID: 17446392
  6. Kcnq1ot1 noncoding RNA mediates transcriptional gene silencing by interacting with Dnmt1.
    Development. 2010 Aug 1;137(15):2493-9 PMID: 20573698
  7. The Air noncoding RNA epigenetically silences transcription by targeting G9a to chromatin.
    Science. 2008 Dec 12;322(5908):1717-20 PMID: 18988810
  8. DGCR8 is essential for microRNA biogenesis and silencing of embryonic stem cell self-renewal.
    Nat Genet. 2007 Mar;39(3):380-5 PMID: 17259983
  9. Endogenous small interfering RNAs in animals.
    Nat Rev Mol Cell Biol. 2008 Sep;9(9):673-8 PMID: 18719707
  10. Transcription of bxd noncoding RNAs promoted by trithorax represses Ubx in cis by transcriptional interference.
    Cell. 2006 Dec 15;127(6):1209-21 PMID: 17174895
  11. RNA-binding protein Dnd1 inhibits microRNA access to target mRNA.
    Cell. 2007 Dec 28;131(7):1273-86 PMID: 18155131
  12. Functionally distinct regulatory RNAs generated by bidirectional transcription and processing of microRNA loci.
    Genes Dev. 2008 Jan 1;22(1):26-36 PMID: 18172163
  13. Maternal microRNAs are essential for mouse zygotic development.
    Genes Dev. 2007 Mar 15;21(6):644-8 PMID: 17369397
  14. Chromosome-wide gene-specific targeting of the Drosophila dosage compensation complex.
    Genes Dev. 2006 Apr 1;20(7):858-70 PMID: 16547172
  15. Many human large intergenic noncoding RNAs associate with chromatin-modifying complexes and affect gene expression.
    Proc Natl Acad Sci U S A. 2009 Jul 14;106(28):11667-72 PMID: 19571010
  16. MicroRNAs regulate the expression of the alternative splicing factor nPTB during muscle development.
    Genes Dev. 2007 Jan 1;21(1):71-84 PMID: 17210790
  17. Selective blockade of microRNA processing by Lin28.
    Science. 2008 Apr 4;320(5872):97-100 PMID: 18292307
  18. Lessons from X-chromosome inactivation: long ncRNA as guides and tethers to the epigenome.
    Genes Dev. 2009 Aug 15;23(16):1831-42 PMID: 19684108
  19. The non-coding Air RNA is required for silencing autosomal imprinted genes.
    Nature. 2002 Feb 14;415(6873):810-3 PMID: 11845212
  20. Polycomb group proteins Ezh2 and Rnf2 direct genomic contraction and imprinted repression in early mouse embryos.
    Dev Cell. 2008 Nov;15(5):668-79 PMID: 18848501
  21. A large intergenic noncoding RNA induced by p53 mediates global gene repression in the p53 response.
    Cell. 2010 Aug 6;142(3):409-19 PMID: 20673990
  22. Specific expression of long noncoding RNAs in the mouse brain.
    Proc Natl Acad Sci U S A. 2008 Jan 15;105(2):716-21 PMID: 18184812
  23. Dysregulation of cardiogenesis, cardiac conduction, and cell cycle in mice lacking miRNA-1-2.
    Cell. 2007 Apr 20;129(2):303-17 PMID: 17397913
  24. Pervasive and cooperative deadenylation of 3'UTRs by embryonic microRNA families.
    Mol Cell. 2010 Nov 24;40(4):558-70 PMID: 21095586
  25. Cold-induced silencing by long antisense transcripts of an Arabidopsis Polycomb target.
    Nature. 2009 Dec 10;462(7274):799-802 PMID: 20010688
  26. A natural antisense transcript regulates Zeb2/Sip1 gene expression during Snail1-induced epithelial-mesenchymal transition.
    Genes Dev. 2008 Mar 15;22(6):756-69 PMID: 18347095
  27. Regulatory RNAs in bacteria.
    Cell. 2009 Feb 20;136(4):615-28 PMID: 19239884
  28. A feedback loop comprising lin-28 and let-7 controls pre-let-7 maturation during neural stem-cell commitment.
    Nat Cell Biol. 2008 Aug;10(8):987-93 PMID: 18604195
  29. Long noncoding RNAs with enhancer-like function in human cells.
    Cell. 2010 Oct 1;143(1):46-58 PMID: 20887892
  30. The human XIST gene: analysis of a 17 kb inactive X-specific RNA that contains conserved repeats and is highly localized within the nucleus.
    Cell. 1992 Oct 30;71(3):527-42 PMID: 1423611
  31. A novel C. elegans zinc finger transcription factor, lsy-2, required for the cell type-specific expression of the lsy-6 microRNA.
    Development. 2005 Dec;132(24):5451-60 PMID: 16291785
  32. A gene complex controlling segmentation in Drosophila.
    Nature. 1978 Dec 7;276(5688):565-70 PMID: 103000
  33. Small peptide regulators of actin-based cell morphogenesis encoded by a polycistronic mRNA.
    Nat Cell Biol. 2007 Jun;9(6):660-5 PMID: 17486114
  34. The roX genes encode redundant male-specific lethal transcripts required for targeting of the MSL complex.
    EMBO J. 2002 Mar 1;21(5):1084-91 PMID: 11867536
  35. Embryonic stem cell-specific microRNAs regulate the G1-S transition and promote rapid proliferation.
    Nat Genet. 2008 Dec;40(12):1478-83 PMID: 18978791
  36. Critical roles for Dicer in the female germline.
    Genes Dev. 2007 Mar 15;21(6):682-93 PMID: 17369401
  37. Ancient animal microRNAs and the evolution of tissue identity.
    Nature. 2010 Feb 25;463(7284):1084-8 PMID: 20118916
  38. Long non-coding RNAs: insights into functions.
    Nat Rev Genet. 2009 Mar;10(3):155-9 PMID: 19188922
  39. RNA as a flexible scaffold for proteins: yeast telomerase and beyond.
    Cold Spring Harb Symp Quant Biol. 2006;71:217-24 PMID: 17381300
  40. Generation of induced pluripotent stem cells without Myc from mouse and human fibroblasts.
    Nat Biotechnol. 2008 Jan;26(1):101-6 PMID: 18059259
  41. Transcription activates repressed domains in the Drosophila bithorax complex.
    Development. 2002 Nov;129(21):4923-30 PMID: 12397101
  42. Small RNAs are on the move.
    Nature. 2010 Sep 23;467(7314):415-9 PMID: 20864994
  43. Lin-28 interaction with the Let-7 precursor loop mediates regulated microRNA processing.
    RNA. 2008 Aug;14(8):1539-49 PMID: 18566191
  44. Non-coding RNAs take centre stage in epithelial-to-mesenchymal transition.
    Trends Cell Biol. 2008 Aug;18(8):357-9 PMID: 18585040
  45. Large intergenic non-coding RNA-RoR modulates reprogramming of human induced pluripotent stem cells.
    Nat Genet. 2010 Dec;42(12):1113-7 PMID: 21057500
  46. Requirement for Xist in X chromosome inactivation.
    Nature. 1996 Jan 11;379(6561):131-7 PMID: 8538762
  47. Characterization of small RNAs in Aplysia reveals a role for miR-124 in constraining synaptic plasticity through CREB.
    Neuron. 2009 Sep 24;63(6):803-17 PMID: 19778509
  48. Kcnq1ot1 antisense noncoding RNA mediates lineage-specific transcriptional silencing through chromatin-level regulation.
    Mol Cell. 2008 Oct 24;32(2):232-46 PMID: 18951091
  49. A feedback regulatory loop involving microRNA-9 and nuclear receptor TLX in neural stem cell fate determination.
    Nat Struct Mol Biol. 2009 Apr;16(4):365-71 PMID: 19330006
  50. A sequence motif within chromatin entry sites directs MSL establishment on the Drosophila X chromosome.
    Cell. 2008 Aug 22;134(4):599-609 PMID: 18724933
  51. MicroRNA-directed cleavage of HOXB8 mRNA.
    Science. 2004 Apr 23;304(5670):594-6 PMID: 15105502
  52. Drosophila Pgc protein inhibits P-TEFb recruitment to chromatin in primordial germ cells.
    Nature. 2008 Feb 7;451(7179):730-3 PMID: 18200011
  53. The miR-430/427/302 family controls mesendodermal fate specification via species-specific target selection.
    Dev Cell. 2009 Apr;16(4):517-27 PMID: 19386261
  54. Temporal reciprocity of miRNAs and their targets during the maternal-to-zygotic transition in Drosophila.
    Curr Biol. 2008 Apr 8;18(7):501-6 PMID: 18394895
  55. A transient heterochromatic state in Xist preempts X inactivation choice without RNA stabilization.
    Mol Cell. 2006 Mar 3;21(5):617-28 PMID: 16507360
  56. MicroRNA-145 regulates OCT4, SOX2, and KLF4 and represses pluripotency in human embryonic stem cells.
    Cell. 2009 May 15;137(4):647-58 PMID: 19409607
  57. Maternal mRNA deadenylation and decay by the piRNA pathway in the early Drosophila embryo.
    Nature. 2010 Oct 28;467(7319):1128-32 PMID: 20953170
  58. Reciprocal actions of REST and a microRNA promote neuronal identity.
    Proc Natl Acad Sci U S A. 2006 Feb 14;103(7):2422-7 PMID: 16461918
  59. Noncoding RNAs of trithorax response elements recruit Drosophila Ash1 to Ultrabithorax.
    Science. 2006 Feb 24;311(5764):1118-23 PMID: 16497925
  60. miR-124 regulates adult neurogenesis in the subventricular zone stem cell niche.
    Nat Neurosci. 2009 Apr;12(4):399-408 PMID: 19287386
  61. Genetic regulatory mechanisms in the synthesis of proteins.
    J Mol Biol. 1961 Jun;3:318-56 PMID: 13718526
  62. Functional redundancy within roX1, a noncoding RNA involved in dosage compensation in Drosophila melanogaster.
    Genetics. 2003 Jul;164(3):1003-14 PMID: 12871910
  63. MicroRNA control of Nodal signalling.
    Nature. 2007 Sep 13;449(7159):183-8 PMID: 17728715
  64. The C. elegans heterochronic gene lin-4 encodes small RNAs with antisense complementarity to lin-14.
    Cell. 1993 Dec 3;75(5):843-54 PMID: 8252621
  65. Most Caenorhabditis elegans microRNAs are individually not essential for development or viability.
    PLoS Genet. 2007 Dec;3(12):e215 PMID: 18085825
  66. The Drosophila microRNA iab-4 causes a dominant homeotic transformation of halteres to wings.
    Genes Dev. 2005 Dec 15;19(24):2947-52 PMID: 16357215
  67. The let-7 target gene mouse lin-41 is a stem cell specific E3 ubiquitin ligase for the miRNA pathway protein Ago2.
    Nat Cell Biol. 2009 Dec;11(12):1411-20 PMID: 19898466
  68. Small silencing RNAs: an expanding universe.
    Nat Rev Genet. 2009 Feb;10(2):94-108 PMID: 19148191
  69. MicroRNA-21 (miR-21) post-transcriptionally downregulates tumor suppressor Pdcd4 and stimulates invasion, intravasation and metastasis in colorectal cancer.
    Oncogene. 2008 Apr 3;27(15):2128-36 PMID: 17968323
  70. The let-7 MicroRNA family members mir-48, mir-84, and mir-241 function together to regulate developmental timing in Caenorhabditis elegans.
    Dev Cell. 2005 Sep;9(3):403-14 PMID: 16139228
  71. Functional demarcation of active and silent chromatin domains in human HOX loci by noncoding RNAs.
    Cell. 2007 Jun 29;129(7):1311-23 PMID: 17604720
  72. Posttranscriptional regulation of the heterochronic gene lin-14 by lin-4 mediates temporal pattern formation in C. elegans.
    Cell. 1993 Dec 3;75(5):855-62 PMID: 8252622
  73. P53 mRNA controls p53 activity by managing Mdm2 functions.
    Nat Cell Biol. 2008 Sep;10(9):1098-105 PMID: 19160491
  74. Long non-coding RNA HOTAIR reprograms chromatin state to promote cancer metastasis.
    Nature. 2010 Apr 15;464(7291):1071-6 PMID: 20393566
  75. Embryonic stem cell-specific microRNAs promote induced pluripotency.
    Nat Biotechnol. 2009 May;27(5):459-61 PMID: 19363475
  76. Downregulation of miRNA-200c links breast cancer stem cells with normal stem cells.
    Cell. 2009 Aug 7;138(3):592-603 PMID: 19665978
  77. Pervasive regulation of Drosophila Notch target genes by GY-box-, Brd-box-, and K-box-class microRNAs.
    Genes Dev. 2005 May 1;19(9):1067-80 PMID: 15833912
  78. Loss of miR-200 inhibition of Suz12 leads to polycomb-mediated repression required for the formation and maintenance of cancer stem cells.
    Mol Cell. 2010 Sep 10;39(5):761-72 PMID: 20832727
  79. A brain-specific microRNA regulates dendritic spine development.
    Nature. 2006 Jan 19;439(7074):283-9 PMID: 16421561
  80. Noncoding RNA in development.
    Mamm Genome. 2008 Aug;19(7-8):454-92 PMID: 18839252
  81. Repression of the human dihydrofolate reductase gene by a non-coding interfering transcript.
    Nature. 2007 Feb 8;445(7128):666-70 PMID: 17237763
  82. X chromosome inactivation in the absence of Dicer.
    Proc Natl Acad Sci U S A. 2009 Jan 27;106(4):1122-7 PMID: 19164542
  83. Lin28 mediates the terminal uridylation of let-7 precursor MicroRNA.
    Mol Cell. 2008 Oct 24;32(2):276-84 PMID: 18951094
  84. Activation of transcription through histone H4 acetylation by MOF, an acetyltransferase essential for dosage compensation in Drosophila.
    Mol Cell. 2000 Feb;5(2):367-75 PMID: 10882077
  85. The MicroRNA miR-124 promotes neuronal differentiation by triggering brain-specific alternative pre-mRNA splicing.
    Mol Cell. 2007 Aug 3;27(3):435-48 PMID: 17679093
  86. A reciprocal repression between ZEB1 and members of the miR-200 family promotes EMT and invasion in cancer cells.
    EMBO Rep. 2008 Jun;9(6):582-9 PMID: 18483486
  87. MicroRNA-mediated switching of chromatin-remodelling complexes in neural development.
    Nature. 2009 Jul 30;460(7255):642-6 PMID: 19561591
  88. The widespread regulation of microRNA biogenesis, function and decay.
    Nat Rev Genet. 2010 Sep;11(9):597-610 PMID: 20661255
  89. The severity of roX1 mutations is predicted by MSL localization on the X chromosome.
    Mech Dev. 2005 Oct;122(10):1094-105 PMID: 16125915
  90. The miR-200 family determines the epithelial phenotype of cancer cells by targeting the E-cadherin repressors ZEB1 and ZEB2.
    Genes Dev. 2008 Apr 1;22(7):894-907 PMID: 18381893
  91. The EMT-activator ZEB1 promotes tumorigenicity by repressing stemness-inhibiting microRNAs.
    Nat Cell Biol. 2009 Dec;11(12):1487-95 PMID: 19935649
  92. Opposing microRNA families regulate self-renewal in mouse embryonic stem cells.
    Nature. 2010 Feb 4;463(7281):621-6 PMID: 20054295
  93. A single Hox locus in Drosophila produces functional microRNAs from opposite DNA strands.
    Genes Dev. 2008 Jan 1;22(1):8-13 PMID: 18172160
  94. Chromosomal silencing and localization are mediated by different domains of Xist RNA.
    Nat Genet. 2002 Feb;30(2):167-74 PMID: 11780141
  95. Epigenetic inheritance in plants.
    Nature. 2007 May 24;447(7143):418-24 PMID: 17522675
  96. The let-7 microRNA represses cell proliferation pathways in human cells.
    Cancer Res. 2007 Aug 15;67(16):7713-22 PMID: 17699775
  97. Small RNAs in flower development.
    Eur J Cell Biol. 2010 Feb-Mar;89(2-3):250-7 PMID: 20031253
  98. Transcription through the iab-7 cis-regulatory domain of the bithorax complex interferes with maintenance of Polycomb-mediated silencing.
    Development. 2002 Nov;129(21):4915-22 PMID: 12397100
  99. MicroRNA-9a ensures the precise specification of sensory organ precursors in Drosophila.
    Genes Dev. 2006 Oct 15;20(20):2793-805 PMID: 17015424
  100. Enhancer competition between H19 and Igf2 does not mediate their imprinting.
    Proc Natl Acad Sci U S A. 1999 Aug 17;96(17):9733-8 PMID: 10449763
  101. Characterization of a murine gene expressed from the inactive X chromosome.
    Nature. 1991 May 23;351(6324):325-9 PMID: 2034278
  102. Novel transcripts from the Ultrabithorax domain of the bithorax complex.
    Genes Dev. 1987 May;1(3):307-22 PMID: 3119423
  103. Gene regulation for higher cells: a theory.
    Science. 1969 Jul 25;165(3891):349-57 PMID: 5789433
  104. Molecular biology: The long and short of RNAs.
    Nature. 2009 Feb 19;457(7232):974-5 PMID: 19225515
  105. Programmed cell death 4 (PDCD4) is an important functional target of the microRNA miR-21 in breast cancer cells.
    J Biol Chem. 2008 Jan 11;283(2):1026-33 PMID: 17991735
  106. Ab initio reconstruction of cell type-specific transcriptomes in mouse reveals the conserved multi-exonic structure of lincRNAs.
    Nat Biotechnol. 2010 May;28(5):503-10 PMID: 20436462
  107. Context-dependent functions of specific microRNAs in neuronal development.
    Neural Dev. 2010 Oct 01;5:25 PMID: 20920300
  108. A mammalian microRNA expression atlas based on small RNA library sequencing.
    Cell. 2007 Jun 29;129(7):1401-14 PMID: 17604727
  109. MicroRNAs: target recognition and regulatory functions.
    Cell. 2009 Jan 23;136(2):215-33 PMID: 19167326
  110. Epithelial-mesenchymal transitions in development and disease.
    Cell. 2009 Nov 25;139(5):871-90 PMID: 19945376
  111. Cotranscriptional recruitment of the dosage compensation complex to X-linked target genes.
    Genes Dev. 2007 Aug 15;21(16):2030-40 PMID: 17699750
  112. The long noncoding RNA, Jpx, is a molecular switch for X chromosome inactivation.
    Cell. 2010 Oct 29;143(3):390-403 PMID: 21029862
  113. Drosophila dosage compensation: a complex voyage to the X chromosome.
    Development. 2009 May;136(9):1399-410 PMID: 19363150
  114. RNA traffic control of chromatin complexes.
    Curr Opin Genet Dev. 2010 Apr;20(2):142-8 PMID: 20362426
  115. The maternal-to-zygotic transition: a play in two acts.
    Development. 2009 Sep;136(18):3033-42 PMID: 19700615
  116. Serum response factor regulates a muscle-specific microRNA that targets Hand2 during cardiogenesis.
    Nature. 2005 Jul 14;436(7048):214-20 PMID: 15951802
  117. Zebrafish MiR-430 promotes deadenylation and clearance of maternal mRNAs.
    Science. 2006 Apr 7;312(5770):75-9 PMID: 16484454
  118. The microRNA miR-124 controls gene expression in the sensory nervous system of Caenorhabditis elegans.
    Nucleic Acids Res. 2010 Jun;38(11):3780-93 PMID: 20176573
  119. Zebrafish miR-214 modulates Hedgehog signaling to specify muscle cell fate.
    Nat Genet. 2007 Feb;39(2):259-63 PMID: 17220889
  120. Long noncoding RNA as modular scaffold of histone modification complexes.
    Science. 2010 Aug 6;329(5992):689-93 PMID: 20616235
  121. Smad proteins bind a conserved RNA sequence to promote microRNA maturation by Drosha.
    Mol Cell. 2010 Aug 13;39(3):373-84 PMID: 20705240
  122. MicroRNA function is globally suppressed in mouse oocytes and early embryos.
    Curr Biol. 2010 Feb 9;20(3):271-7 PMID: 20116247
  123. Polycomb proteins targeted by a short repeat RNA to the mouse X chromosome.
    Science. 2008 Oct 31;322(5902):750-6 PMID: 18974356
  124. Short RNAs are transcribed from repressed polycomb target genes and interact with polycomb repressive complex-2.
    Mol Cell. 2010 Jun 11;38(5):675-88 PMID: 20542000
  125. The miR-200 family and miR-205 regulate epithelial to mesenchymal transition by targeting ZEB1 and SIP1.
    Nat Cell Biol. 2008 May;10(5):593-601 PMID: 18376396
  126. microRNA functions.
    Annu Rev Cell Dev Biol. 2007;23:175-205 PMID: 17506695
  127. MicroRNA-9 directs late organizer activity of the midbrain-hindbrain boundary.
    Nat Neurosci. 2008 Jun;11(6):641-8 PMID: 18454145
  128. The X as model for RNA's niche in epigenomic regulation.
    Cold Spring Harb Perspect Biol. 2010 Sep;2(9):a003749 PMID: 20739414
  129. A global view of genomic information--moving beyond the gene and the master regulator.
    Trends Genet. 2010 Jan;26(1):21-8 PMID: 19944475
  130. SMAD proteins control DROSHA-mediated microRNA maturation.
    Nature. 2008 Jul 3;454(7200):56-61 PMID: 18548003
  131. Nodal morphogens.
    Cold Spring Harb Perspect Biol. 2009 Nov;1(5):a003459 PMID: 20066122
  132. The miR-200 family inhibits epithelial-mesenchymal transition and cancer cell migration by direct targeting of E-cadherin transcriptional repressors ZEB1 and ZEB2.
    J Biol Chem. 2008 May 30;283(22):14910-4 PMID: 18411277
  133. A role for Lin28 in primordial germ-cell development and germ-cell malignancy.
    Nature. 2009 Aug 13;460(7257):909-13 PMID: 19578360
  134. Chromatin signature reveals over a thousand highly conserved large non-coding RNAs in mammals.
    Nature. 2009 Mar 12;458(7235):223-7 PMID: 19182780
  135. Developmental RNA processing of 3'UTRs in Hox mRNAs as a context-dependent mechanism modulating visibility to microRNAs.
    Development. 2010 Sep 1;137(17):2951-60 PMID: 20667912
  136. Target protectors reveal dampening and balancing of Nodal agonist and antagonist by miR-430.
    Science. 2007 Oct 12;318(5848):271-4 PMID: 17761850
  137. Dicer is essential for mouse development.
    Nat Genet. 2003 Nov;35(3):215-7 PMID: 14528307
  138. The Evf-2 noncoding RNA is transcribed from the Dlx-5/6 ultraconserved region and functions as a Dlx-2 transcriptional coactivator.
    Genes Dev. 2006 Jun 1;20(11):1470-84 PMID: 16705037
  139. DAZL relieves miRNA-mediated repression of germline mRNAs by controlling poly(A) tail length in zebrafish.
    PLoS One. 2009 Oct 19;4(10):e7513 PMID: 19838299
  140. Balanced gene regulation by an embryonic brain ncRNA is critical for adult hippocampal GABA circuitry.
    Nat Neurosci. 2009 Aug;12(8):1020-7 PMID: 19620975
  141. MicroRNAs regulate brain morphogenesis in zebrafish.
    Science. 2005 May 6;308(5723):833-8 PMID: 15774722
  142. MicroRNAs in embryonic stem cells.
    J Cell Physiol. 2009 Feb;218(2):251-5 PMID: 18821562
  143. The role of microRNA-1 and microRNA-133 in skeletal muscle proliferation and differentiation.
    Nat Genet. 2006 Feb;38(2):228-33 PMID: 16380711
  144. MicroRNAs in the Drosophila bithorax complex.
    Genes Dev. 2008 Jan 1;22(1):14-9 PMID: 18172161
  145. A mutation creating a potential illegitimate microRNA target site in the myostatin gene affects muscularity in sheep.
    Nat Genet. 2006 Jul;38(7):813-8 PMID: 16751773
  146. Imprinting along the Kcnq1 domain on mouse chromosome 7 involves repressive histone methylation and recruitment of Polycomb group complexes.
    Nat Genet. 2004 Dec;36(12):1296-300 PMID: 15516932
  147. Elongation of the Kcnq1ot1 transcript is required for genomic imprinting of neighboring genes.
    Genes Dev. 2006 May 15;20(10):1268-82 PMID: 16702402
  148. Connecting microRNA genes to the core transcriptional regulatory circuitry of embryonic stem cells.
    Cell. 2008 Aug 8;134(3):521-33 PMID: 18692474
  149. The product of the mouse Xist gene is a 15 kb inactive X-specific transcript containing no conserved ORF and located in the nucleus.
    Cell. 1992 Oct 30;71(3):515-26 PMID: 1423610
  150. Small peptides switch the transcriptional activity of Shavenbaby during Drosophila embryogenesis.
    Science. 2010 Jul 16;329(5989):336-9 PMID: 20647469
  151. Loss of individual microRNAs causes mutant phenotypes in sensitized genetic backgrounds in C. elegans.
    Curr Biol. 2010 Jul 27;20(14):1321-5 PMID: 20579881
  152. MicroRNA-responsive 'sensor' transgenes uncover Hox-like and other developmentally regulated patterns of vertebrate microRNA expression.
    Nat Genet. 2004 Oct;36(10):1079-83 PMID: 15361871
  153. Early origins and evolution of microRNAs and Piwi-interacting RNAs in animals.
    Nature. 2008 Oct 30;455(7217):1193-7 PMID: 18830242
  154. The noncoding RNA taurine upregulated gene 1 is required for differentiation of the murine retina.
    Curr Biol. 2005 Mar 29;15(6):501-12 PMID: 15797018
  155. The complex eukaryotic transcriptome: unexpected pervasive transcription and novel small RNAs.
    Nat Rev Genet. 2009 Dec;10(12):833-44 PMID: 19920851
  156. Genomic and transcriptional co-localization of protein-coding and long non-coding RNA pairs in the developing brain.
    PLoS Genet. 2009 Aug;5(8):e1000617 PMID: 19696892
  157. Many families of C. elegans microRNAs are not essential for development or viability.
    Curr Biol. 2010 Feb 23;20(4):367-73 PMID: 20096582
  158. Deadenylation of maternal mRNAs mediated by miR-427 in Xenopus laevis embryos.
    RNA. 2009 Dec;15(12):2351-63 PMID: 19854872
  159. The microRNA miR-124 antagonizes the anti-neural REST/SCP1 pathway during embryonic CNS development.
    Genes Dev. 2007 Apr 1;21(7):744-9 PMID: 17403776
  160. Human DAZL, DAZ and BOULE genes modulate primordial germ-cell and haploid gamete formation.
    Nature. 2009 Nov 12;462(7270):222-5 PMID: 19865085
  161. Tsix-mediated epigenetic switch of a CTCF-flanked region of the Xist promoter determines the Xist transcription program.
    Genes Dev. 2006 Oct 15;20(20):2787-92 PMID: 17043308
  162. Genomic imprinting and kinship: how good is the evidence?
    Annu Rev Genet. 2004;38:553-85 PMID: 15568986
  163. The function of non-coding RNAs in genomic imprinting.
    Development. 2009 Jun;136(11):1771-83 PMID: 19429783
  164. Dicer-deficient mouse embryonic stem cells are defective in differentiation and centromeric silencing.
    Genes Dev. 2005 Feb 15;19(4):489-501 PMID: 15713842
  165. Characterization of Dicer-deficient murine embryonic stem cells.
    Proc Natl Acad Sci U S A. 2005 Aug 23;102(34):12135-40 PMID: 16099834
  166. Differential regulation of germline mRNAs in soma and germ cells by zebrafish miR-430.
    Curr Biol. 2006 Nov 7;16(21):2135-42 PMID: 17084698
  167. Intersection of the RNA interference and X-inactivation pathways.
    Science. 2008 Jun 6;320(5881):1336-41 PMID: 18535243
  168. Conserved long noncoding RNAs transcriptionally regulated by Oct4 and Nanog modulate pluripotency in mouse embryonic stem cells.
    RNA. 2010 Feb;16(2):324-37 PMID: 20026622
Article Info
Journal
Nature reviews. Genetics
Abbr.
Nat Rev Genet
ISSN
1471-0064
Published
2011-02-00
Pages
136-49
Language
English
Region
England
NLM ID
100962779
PMCID
PMC4081495
Subset
IM
Grants
NIGMS NIH HHS · R01 GM056211 · United States
Analysis Services
Analysis Services

Contact

No. 2 Wenbo Road, Zhangqiu District, Jinan, Shandong

Qilu Normal University · Genelibs Bioinformatics Lab

750 Shunhua Rd, Jinan

2F, Bldg F, University Science Park

Tel: 0531-88819269

WeChat Official Account

Follow our WeChat subscription account for real-time updates and the latest in medical and biological research.


Business Email

E-mail: product@genelibs.com