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PMID: 2102834 Published · ppublish English Journal Article

Isolation of single-copy-sequence clones from a yeast artificial chromosome library of randomly-sheared Arabidopsis thaliana DNA.

Plant molecular biology ·Vol. 14 ·No. 4 ·1990-04-00 ·Pages 561-8

Ward ER, Jen GC

Abstract

We describe the construction of a yeast artificial chromosome (YAC) library from the Arabidopsis thaliana genome. Randomly sheared high molecular weight source DNA was extracted from frozen, ground leaf tissue and blunt-end-ligated to the vector pYAC3. By size-fractionating the ligation products, we achieved an average clone size of 150 kb. Approximately 6% of the YACs contained inserts from the chloroplast genome. We screened clones equivalent to greater than four A. thaliana haploid nuclear genomes and isolated YACs homologous to five single-copy-sequence probes. The library should be useful for chromosome walking and genome mapping experiments. In addition, the approach used for its construction should be applicable to other higher plant species.

MeSH Terms
Chromosomes Cloning, Molecular DNA/genetics,isolation & purification Gene Library Genetic Vectors Plants/genetics Saccharomyces cerevisiae/genetics
Chemicals
DNA
Authors & Affiliations
2 authors, click to expand affiliations / ORCID
Ward E R
Agricultural Biotechnology Research Unit, CIBA-GEIGY Corporation, Research Triangle Park, NC 27709-2257.
Jen G C
References (25)
25 references, click to expand
  1. Characterization of the genome of Arabidopsis thaliana.
    J Mol Biol. 1986 Jan 20;187(2):169-83 PMID: 3701864
  2. An electrophoretic karyotype for yeast.
    Proc Natl Acad Sci U S A. 1985 Jun;82(11):3756-60 PMID: 3889913
  3. The chloroplast genome exists in multimeric forms.
    Proc Natl Acad Sci U S A. 1989 Jun;86(11):4156-60 PMID: 16594051
  4. Genomic sequencing.
    Proc Natl Acad Sci U S A. 1984 Apr;81(7):1991-5 PMID: 6326095
  5. Genome linking with yeast artificial chromosomes.
    Nature. 1988 Sep 8;335(6186):184-6 PMID: 3045566
  6. Arabidopsis thaliana.
    Annu Rev Genet. 1987;21:93-111 PMID: 3327474
  7. Random-clone strategy for genomic restriction mapping in yeast.
    Proc Natl Acad Sci U S A. 1986 Oct;83(20):7826-30 PMID: 3463999
  8. Restriction Fragment Length Polymorphism Linkage Map of Arabidopsis thaliana.
    Plant Cell. 1989 Jul;1(7):699-705 PMID: 12359906
  9. A colony bank containing synthetic Col El hybrid plasmids representative of the entire E. coli genome.
    Cell. 1976 Sep;9(1):91-9 PMID: 788919
  10. Cloning of large segments of exogenous DNA into yeast by means of artificial chromosome vectors.
    Science. 1987 May 15;236(4803):806-12 PMID: 3033825
  11. Isolation of single-copy human genes from a library of yeast artificial chromosome clones.
    Science. 1989 Jun 16;244(4910):1348-51 PMID: 2544027
  12. A technique for radiolabeling DNA restriction endonuclease fragments to high specific activity.
    Anal Biochem. 1983 Jul 1;132(1):6-13 PMID: 6312838
  13. Separation of large DNA molecules by contour-clamped homogeneous electric fields.
    Science. 1986 Dec 19;234(4783):1582-5 PMID: 3538420
  14. Detection of specific sequences among DNA fragments separated by gel electrophoresis.
    J Mol Biol. 1975 Nov 5;98(3):503-17 PMID: 1195397
  15. Construction of yeast artificial chromosome libraries with large inserts using fractionation by pulsed-field gel electrophoresis.
    Nucleic Acids Res. 1989 May 11;17(9):3425-33 PMID: 2542900
  16. Studies on the cleavage of bacteriophage lambda DNA with EcoRI Restriction endonuclease.
    J Mol Biol. 1975 Jan 25;91(3):315-28 PMID: 1102702
  17. Restriction fragment length polymorphism linkage map for Arabidopsis thaliana.
    Proc Natl Acad Sci U S A. 1988 Sep;85(18):6856-60 PMID: 2901107
  18. Construction and characterization of new cloning vehicles. II. A multipurpose cloning system.
    Gene. 1977;2(2):95-113 PMID: 344137
  19. Efficient transfer of large DNA fragments from agarose gels to diazobenzyloxymethyl-paper and rapid hybridization by using dextran sulfate.
    Proc Natl Acad Sci U S A. 1979 Aug;76(8):3683-7 PMID: 291033
  20. Chromosome length controls mitotic chromosome segregation in yeast.
    Cell. 1986 May 23;45(4):529-36 PMID: 3518944
  21. Development of large DNA methods for plants: molecular cloning of large segments of Arabidopsis and carrot DNA into yeast.
    Nucleic Acids Res. 1988 Dec 9;16(23):11091-105 PMID: 3060856
  22. Mitotic and meiotic stability of linear plasmids in yeast.
    Proc Natl Acad Sci U S A. 1983 Jun;80(11):3406-10 PMID: 6344082
  23. Rapid screening of a human genomic library in yeast artificial chromosomes for single-copy sequences.
    Proc Natl Acad Sci U S A. 1989 Aug;86(15):5898-902 PMID: 2668948
  24. Construction of artificial chromosomes in yeast.
    Nature. 1983 Sep 15-21;305(5931):189-93 PMID: 6350893
  25. Transformation of yeast spheroplasts without cell fusion.
    Anal Biochem. 1987 Jun;163(2):391-7 PMID: 3310730
Article Info
Journal
Plant molecular biology
Abbr.
Plant Mol Biol
ISSN
0167-4412
Published
1990-04-00
Pages
561-8
Language
English
Region
Netherlands
NLM ID
9106343
Subset
IM
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