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PMID: 20020479 Published · ppublish English Journal Article Research Support, N.I.H., Extramural Research Support, Non-U.S. Gov't Review

Does CTCF mediate between nuclear organization and gene expression?

Ohlsson R, Lobanenkov V, Klenova E

Abstract

The multifunctional zinc-finger protein CCCTC-binding factor (CTCF) is a very strong candidate for the role of coordinating the expression level of coding sequences with their three-dimensional position in the nucleus, apparently responding to a "code" in the DNA itself. Dynamic interactions between chromatin fibers in the context of nuclear architecture have been implicated in various aspects of genome functions. However, the molecular basis of these interactions still remains elusive and is a subject of intense debate. Here we discuss the nature of CTCF-DNA interactions, the CTCF-binding specificity to its binding sites and the relationship between CTCF and chromatin, and we examine data linking CTCF with gene regulation in the three-dimensional nuclear space. We discuss why these features render CTCF a very strong candidate for the role and propose a unifying model, the "CTCF code," explaining the mechanistic basis of how the information encrypted in DNA may be interpreted by CTCF into diverse nuclear functions.

MeSH Terms
Animals Base Sequence Binding Sites/genetics CCCTC-Binding Factor Cell Cycle Proteins/metabolism Cell Nucleus/genetics,metabolism Chromatin/genetics,metabolism Chromosomal Proteins, Non-Histone/metabolism DNA/genetics,metabolism DNA-Binding Proteins/chemistry,genetics,metabolism Epigenesis, Genetic Gene Expression Humans Mice Models, Biological Models, Genetic Nucleosomes/genetics,metabolism Protein Interaction Domains and Motifs Repressor Proteins/chemistry,genetics,metabolism
Chemicals
CCCTC-Binding Factor CTCF protein, human CTCFL protein, human Cell Cycle Proteins Chromatin Chromosomal Proteins, Non-Histone Ctcf protein, mouse Ctcfl protein, mouse DNA-Binding Proteins Nucleosomes Repressor Proteins cohesins DNA
Authors & Affiliations
3 authors, click to expand affiliations / ORCID
Ohlsson Rolf
Department of Microbiology, Tumor and Cell Biology, Karolinska Institute, Stockholm, Sweden. Rolf.Ohlsson@ki.se
Lobanenkov Victor
Klenova Elena
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Article Info
Journal
BioEssays : news and reviews in molecular, cellular and developmental biology
Abbr.
Bioessays
ISSN
1521-1878
Published
2010-01-00
Pages
37-50
Language
English
Region
United States
NLM ID
8510851
PMCID
PMC6375297
Subset
IM
Grants
Medical Research Council · G0401088 · United Kingdom
Intramural NIH HHS · Z99 AI999999 · United States
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