-
The binding sites for the chromatin insulator protein CTCF map to DNA methylation-free domains genome-wide.
Genome Res. 2004 Aug;14(8):1594-602
PMID: 15256511
-
Evidence that homologous X-chromosome pairing requires transcription and Ctcf protein.
Nat Genet. 2007 Nov;39(11):1390-6
PMID: 17952071
-
The novel BORIS + CTCF gene family is uniquely involved in the epigenetics of normal biology and cancer.
Semin Cancer Biol. 2002 Oct;12(5):399-414
PMID: 12191639
-
Cutting edge: developmental stage-specific recruitment of cohesin to CTCF sites throughout immunoglobulin loci during B lymphocyte development.
J Immunol. 2009 Jan 1;182(1):44-8
PMID: 19109133
-
Cohesins form chromosomal cis-interactions at the developmentally regulated IFNG locus.
Nature. 2009 Jul 16;460(7253):410-3
PMID: 19458616
-
Hierarchical hidden Markov model with application to joint analysis of ChIP-chip and ChIP-seq data.
Bioinformatics. 2009 Jul 15;25(14):1715-21
PMID: 19447789
-
Cohesins functionally associate with CTCF on mammalian chromosome arms.
Cell. 2008 Feb 8;132(3):422-33
PMID: 18237772
-
CTCF tethers an insulator to subnuclear sites, suggesting shared insulator mechanisms across species.
Mol Cell. 2004 Jan 30;13(2):291-8
PMID: 14759373
-
CCCTC-binding factor meets poly(ADP-ribose) polymerase-1.
J Cell Physiol. 2009 May;219(2):265-70
PMID: 19170077
-
Analysis of the H19ICR insulator.
Mol Cell Biol. 2007 May;27(9):3499-510
PMID: 17339341
-
High-resolution circular chromosome conformation capture assay.
Nat Protoc. 2008;3(2):303-13
PMID: 18274532
-
Functional association of CTCF with the insulator upstream of the H19 gene is parent of origin-specific and methylation-sensitive.
Curr Biol. 2000 Jul 13;10(14):853-6
PMID: 10899010
-
A transcriptional insulator at the imprinted H19/Igf2 locus.
Genes Dev. 2000 Aug 1;14(15):1908-19
PMID: 10921905
-
CTCF: master weaver of the genome.
Cell. 2009 Jun 26;137(7):1194-211
PMID: 19563753
-
Identification of a perinuclear positioning element in human subtelomeres that requires A-type lamins and CTCF.
EMBO J. 2009 Aug 19;28(16):2428-36
PMID: 19644448
-
Multiple nucleosome positioning sites regulate the CTCF-mediated insulator function of the H19 imprinting control region.
Mol Cell Biol. 2002 May;22(10):3339-44
PMID: 11971967
-
Reciprocal binding of CTCF and BORIS to the NY-ESO-1 promoter coincides with derepression of this cancer-testis gene in lung cancer cells.
Cancer Res. 2005 Sep 1;65(17):7763-74
PMID: 16140944
-
Nuclear organization of active and inactive chromatin domains uncovered by chromosome conformation capture-on-chip (4C).
Nat Genet. 2006 Nov;38(11):1348-54
PMID: 17033623
-
Familial cases of point mutations in the XIST promoter reveal a correlation between CTCF binding and pre-emptive choices of X chromosome inactivation.
Hum Mol Genet. 2005 Apr 1;14(7):953-65
PMID: 15731119
-
CTCF mediates interchromosomal colocalization between Igf2/H19 and Wsb1/Nf1.
Science. 2006 Apr 14;312(5771):269-72
PMID: 16614224
-
Epigenetic silencing of the p16(INK4a) tumor suppressor is associated with loss of CTCF binding and a chromatin boundary.
Mol Cell. 2009 May 15;34(3):271-84
PMID: 19450526
-
Functional phosphorylation sites in the C-terminal region of the multivalent multifunctional transcriptional factor CTCF.
Mol Cell Biol. 2001 Mar;21(6):2221-34
PMID: 11238955
-
The CTCF insulator protein is posttranslationally modified by SUMO.
Mol Cell Biol. 2009 Feb;29(3):714-25
PMID: 19029252
-
Thyroid hormone-regulated enhancer blocking: cooperation of CTCF and thyroid hormone receptor.
EMBO J. 2003 Apr 1;22(7):1579-87
PMID: 12660164
-
CTCF binds the proximal exonic region of hTERT and inhibits its transcription.
Nucleic Acids Res. 2005 Dec 02;33(21):6850-60
PMID: 16326864
-
We gather together: insulators and genome organization.
Curr Opin Genet Dev. 2007 Oct;17(5):400-7
PMID: 17913488
-
The chicken beta-globin insulator element conveys chromatin boundary activity but not imprinting at the mouse Igf2/H19 domain.
Development. 2002 Feb;129(4):897-904
PMID: 11861473
-
CTCF maintains differential methylation at the Igf2/H19 locus.
Nat Genet. 2003 Jan;33(1):66-9
PMID: 12461525
-
A novel sequence-specific DNA binding protein which interacts with three regularly spaced direct repeats of the CCCTC-motif in the 5'-flanking sequence of the chicken c-myc gene.
Oncogene. 1990 Dec;5(12):1743-53
PMID: 2284094
-
De novo formation of a subnuclear body.
Science. 2008 Dec 12;322(5908):1713-7
PMID: 18948503
-
Critical role for the transcription regulator CCCTC-binding factor in the control of Th2 cytokine expression.
J Immunol. 2009 Jan 15;182(2):999-1010
PMID: 19124743
-
The insulator factor CTCF controls MHC class II gene expression and is required for the formation of long-distance chromatin interactions.
J Exp Med. 2008 Apr 14;205(4):785-98
PMID: 18347100
-
Genome-wide identification of in vivo protein-DNA binding sites from ChIP-Seq data.
Nucleic Acids Res. 2008 Sep;36(16):5221-31
PMID: 18684996
-
Expression of the CTCF-paralogous cancer-testis gene, brother of the regulator of imprinted sites (BORIS), is regulated by three alternative promoters modulated by CpG methylation and by CTCF and p53 transcription factors.
Nucleic Acids Res. 2007;35(21):7372-88
PMID: 17962299
-
Decreased poly(ADP-ribosyl)ation of CTCF, a transcription factor, is associated with breast cancer phenotype and cell proliferation.
Clin Cancer Res. 2009 Sep 15;15(18):5762-71
PMID: 19737964
-
Looping and interaction between hypersensitive sites in the active beta-globin locus.
Mol Cell. 2002 Dec;10(6):1453-65
PMID: 12504019
-
Making contacts on a nucleic acid polymer.
Trends Biochem Sci. 2001 Dec;26(12):733-40
PMID: 11738597
-
Purification of proteins associated with specific genomic Loci.
Cell. 2009 Jan 9;136(1):175-86
PMID: 19135898
-
Epigenetic control of CTCFL/BORIS and OCT4 expression in urogenital malignancies.
Biochem Pharmacol. 2006 Nov 30;72(11):1577-88
PMID: 16854382
-
A complex deoxyribonucleic acid looping configuration associated with the silencing of the maternal Igf2 allele.
Mol Endocrinol. 2008 Jun;22(6):1476-88
PMID: 18356289
-
Mutation of a single CTCF target site within the H19 imprinting control region leads to loss of Igf2 imprinting and complex patterns of de novo methylation upon maternal inheritance.
Mol Cell Biol. 2004 Apr;24(8):3497-504
PMID: 15060168
-
Three-dimensional genome organization in interphase and its relation to genome function.
Semin Cell Dev Biol. 2007 Oct;18(5):707-14
PMID: 17905616
-
Methylation of a CTCF-dependent boundary controls imprinted expression of the Igf2 gene.
Nature. 2000 May 25;405(6785):482-5
PMID: 10839546
-
Three-dimensional conformation at the H19/Igf2 locus supports a model of enhancer tracking.
Hum Mol Genet. 2008 Oct 1;17(19):3021-9
PMID: 18617529
-
CTCF regulates allelic expression of Igf2 by orchestrating a promoter-polycomb repressive complex 2 intrachromosomal loop.
Mol Cell Biol. 2008 Oct;28(20):6473-82
PMID: 18662993
-
CTCF is conserved from Drosophila to humans and confers enhancer blocking of the Fab-8 insulator.
EMBO Rep. 2005 Feb;6(2):165-70
PMID: 15678159
-
Domain organization of human chromosomes revealed by mapping of nuclear lamina interactions.
Nature. 2008 Jun 12;453(7197):948-51
PMID: 18463634
-
Replication timing and epigenetic reprogramming of gene expression: a two-way relationship?
Nat Rev Genet. 2009 Apr;10(4):269-76
PMID: 19274048
-
An exceptionally conserved transcriptional repressor, CTCF, employs different combinations of zinc fingers to bind diverged promoter sequences of avian and mammalian c-myc oncogenes.
Mol Cell Biol. 1996 Jun;16(6):2802-13
PMID: 8649389
-
CTCF, a candidate trans-acting factor for X-inactivation choice.
Science. 2002 Jan 11;295(5553):345-7
PMID: 11743158
-
CTCF-dependent chromatin insulator is linked to epigenetic remodeling.
Mol Cell. 2006 Sep 1;23(5):733-42
PMID: 16949368
-
Interchromosomal associations between alternatively expressed loci.
Nature. 2005 Jun 2;435(7042):637-45
PMID: 15880101
-
Flanking HS-62.5 and 3' HS1, and regions upstream of the LCR, are not required for beta-globin transcription.
Blood. 2006 Aug 15;108(4):1395-401
PMID: 16645164
-
Nucleosome positioning signals in the DNA sequence of the human and mouse H19 imprinting control regions.
J Mol Biol. 2003 Jan 31;325(5):873-87
PMID: 12527297
-
Chromatin dynamics and gene positioning.
Cell. 2008 Mar 21;132(6):929-34
PMID: 18358806
-
The testis-specific factor CTCFL cooperates with the protein methyltransferase PRMT7 in H19 imprinting control region methylation.
PLoS Biol. 2006 Oct;4(11):e355
PMID: 17048991
-
YB-1 and CTCF differentially regulate the 5-HTT polymorphic intron 2 enhancer which predisposes to a variety of neurological disorders.
J Neurosci. 2004 Jun 30;24(26):5966-73
PMID: 15229244
-
Antisense transcription and heterochromatin at the DM1 CTG repeats are constrained by CTCF.
Mol Cell. 2005 Nov 11;20(3):483-9
PMID: 16285929
-
Identification of a Ctcf cofactor, Yy1, for the X chromosome binary switch.
Mol Cell. 2007 Jan 12;25(1):43-56
PMID: 17218270
-
Impact of chromatin structures on DNA processing for genomic analyses.
PLoS One. 2009 Aug 20;4(8):e6700
PMID: 19693276
-
Chromosome territories, nuclear architecture and gene regulation in mammalian cells.
Nat Rev Genet. 2001 Apr;2(4):292-301
PMID: 11283701
-
Genetics and epigenetics of the multifunctional protein CTCF.
Curr Top Dev Biol. 2008;80:337-60
PMID: 17950379
-
Tumor-associated zinc finger mutations in the CTCF transcription factor selectively alter tts DNA-binding specificity.
Cancer Res. 2002 Jan 1;62(1):48-52
PMID: 11782357
-
Transcriptional repression by the insulator protein CTCF involves histone deacetylases.
Nucleic Acids Res. 2000 Apr 15;28(8):1707-13
PMID: 10734189
-
Regulatory factor interactions and somatic silencing of the germ cell-specific ALF gene.
J Biol Chem. 2006 Nov 10;281(45):34288-98
PMID: 16966320
-
High-resolution profiling of histone methylations in the human genome.
Cell. 2007 May 18;129(4):823-37
PMID: 17512414
-
A 5' element of the chicken beta-globin domain serves as an insulator in human erythroid cells and protects against position effect in Drosophila.
Cell. 1993 Aug 13;74(3):505-14
PMID: 8348617
-
Human gamma-satellite DNA maintains open chromatin structure and protects a transgene from epigenetic silencing.
Genome Res. 2009 Apr;19(4):533-44
PMID: 19141594
-
The evolution of epigenetic regulators CTCF and BORIS/CTCFL in amniotes.
PLoS Genet. 2008 Aug 29;4(8):e1000169
PMID: 18769711
-
CTCF regulates cell cycle progression of alphabeta T cells in the thymus.
EMBO J. 2008 Nov 5;27(21):2839-50
PMID: 18923423
-
SATB1 packages densely looped, transcriptionally active chromatin for coordinated expression of cytokine genes.
Nat Genet. 2006 Nov;38(11):1278-88
PMID: 17057718
-
The pluripotency factor Oct4 interacts with Ctcf and also controls X-chromosome pairing and counting.
Nature. 2009 Jul 2;460(7251):128-32
PMID: 19536159
-
The zinc finger protein CTCF binds to the APBbeta domain of the amyloid beta-protein precursor promoter. Evidence for a role in transcriptional activation.
J Biol Chem. 1997 Dec 26;272(52):33353-9
PMID: 9407128
-
Nuclear organization of the genome and the potential for gene regulation.
Nature. 2007 May 24;447(7143):413-7
PMID: 17522674
-
Global analysis of the insulator binding protein CTCF in chromatin barrier regions reveals demarcation of active and repressive domains.
Genome Res. 2009 Jan;19(1):24-32
PMID: 19056695
-
Integration of external signaling pathways with the core transcriptional network in embryonic stem cells.
Cell. 2008 Jun 13;133(6):1106-17
PMID: 18555785
-
The LPS-induced transcriptional upregulation of the chicken lysozyme locus involves CTCF eviction and noncoding RNA transcription.
Mol Cell. 2008 Oct 10;32(1):129-39
PMID: 18851839
-
CTCF is a uniquely versatile transcription regulator linked to epigenetics and disease.
Trends Genet. 2001 Sep;17(9):520-7
PMID: 11525835
-
Gene regulation in the third dimension.
Science. 2008 Mar 28;319(5871):1793-4
PMID: 18369139
-
Poly(ADP-ribosyl)ation regulates CTCF-dependent chromatin insulation.
Nat Genet. 2004 Oct;36(10):1105-10
PMID: 15361875
-
Dynamic genome architecture in the nuclear space: regulation of gene expression in three dimensions.
Nat Rev Genet. 2007 Feb;8(2):104-15
PMID: 17230197
-
Active promoters and insulators are marked by the centrosomal protein 190.
EMBO J. 2009 Apr 8;28(7):877-88
PMID: 19229299
-
BORIS, a novel male germ-line-specific protein associated with epigenetic reprogramming events, shares the same 11-zinc-finger domain with CTCF, the insulator protein involved in reading imprinting marks in the soma.
Proc Natl Acad Sci U S A. 2002 May 14;99(10):6806-11
PMID: 12011441
-
Global expression analysis of cancer/testis genes in uterine cancers reveals a high incidence of BORIS expression.
Clin Cancer Res. 2007 Mar 15;13(6):1713-9
PMID: 17363524
-
Genetics. Widespread monoallelic expression.
Science. 2007 Nov 16;318(5853):1077-8
PMID: 18006729
-
CTCFBSDB: a CTCF-binding site database for characterization of vertebrate genomic insulators.
Nucleic Acids Res. 2008 Jan;36(Database issue):D83-7
PMID: 17981843
-
Three subclasses of a Drosophila insulator show distinct and cell type-specific genomic distributions.
Genes Dev. 2009 Jun 1;23(11):1338-50
PMID: 19443682
-
CTCF is the master organizer of domain-wide allele-specific chromatin at the H19/Igf2 imprinted region.
Mol Cell Biol. 2008 Feb;28(3):1124-35
PMID: 18039862
-
BORIS, a paralogue of the transcription factor, CTCF, is aberrantly expressed in breast tumours.
Br J Cancer. 2008 Feb 12;98(3):571-9
PMID: 18195709
-
Cell cycle control of Kaposi's sarcoma-associated herpesvirus latency transcription by CTCF-cohesin interactions.
J Virol. 2009 Jun;83(12):6199-210
PMID: 19369356
-
Molecular cloning and expression of the chromatin insulator protein CTCF in Xenopus laevis.
Mech Dev. 2002 Apr;113(1):95-8
PMID: 11900981
-
Cohesin mediates transcriptional insulation by CCCTC-binding factor.
Nature. 2008 Feb 14;451(7180):796-801
PMID: 18235444
-
Chromosome crosstalk in three dimensions.
Nature. 2009 Sep 10;461(7261):212-7
PMID: 19741702
-
CTCF mediates long-range chromatin looping and local histone modification in the beta-globin locus.
Genes Dev. 2006 Sep 1;20(17):2349-54
PMID: 16951251
-
Cohesins localize with CTCF at the KSHV latency control region and at cellular c-myc and H19/Igf2 insulators.
EMBO J. 2008 Feb 20;27(4):654-66
PMID: 18219272
-
CTCF mediates methylation-sensitive enhancer-blocking activity at the H19/Igf2 locus.
Nature. 2000 May 25;405(6785):486-9
PMID: 10839547
-
Physical and functional interaction between two pluripotent proteins, the Y-box DNA/RNA-binding factor, YB-1, and the multivalent zinc finger factor, CTCF.
J Biol Chem. 2000 Sep 22;275(38):29915-21
PMID: 10906122
-
Gene regulation through nuclear organization.
Nat Struct Mol Biol. 2007 Nov;14(11):1049-55
PMID: 17984967
-
The insulator binding protein CTCF positions 20 nucleosomes around its binding sites across the human genome.
PLoS Genet. 2008 Jul 25;4(7):e1000138
PMID: 18654629
-
Modular structure of a chicken lysozyme silencer: involvement of an unusual thyroid hormone receptor binding site.
Cell. 1990 May 4;61(3):505-14
PMID: 2159385
-
Position-effect protection and enhancer blocking by the chicken beta-globin insulator are separable activities.
Proc Natl Acad Sci U S A. 2002 May 14;99(10):6883-8
PMID: 12011446
-
Chromatin insulators: regulatory mechanisms and epigenetic inheritance.
Mol Cell. 2008 Oct 10;32(1):1-9
PMID: 18851828
-
Analysis of the vertebrate insulator protein CTCF-binding sites in the human genome.
Cell. 2007 Mar 23;128(6):1231-45
PMID: 17382889
-
Epigenetic boundaries of tumour suppressor gene promoters: the CTCF connection and its role in carcinogenesis.
J Cell Mol Med. 2006 Jul-Sep;10(3):554-68
PMID: 16989720
-
CTCF genomic binding sites in Drosophila and the organisation of the bithorax complex.
PLoS Genet. 2007 Jul;3(7):e112
PMID: 17616980
-
Inter-chromosomal gene regulation in the mammalian cell nucleus.
Curr Opin Genet Dev. 2007 Oct;17(5):456-64
PMID: 17884460
-
The human enhancer blocker CTC-binding factor interacts with the transcription factor Kaiso.
J Biol Chem. 2005 Dec 30;280(52):43017-23
PMID: 16230345
-
Intermingling of chromosome territories in interphase suggests role in translocations and transcription-dependent associations.
PLoS Biol. 2006 May;4(5):e138
PMID: 16623600
-
Capturing chromosome conformation.
Science. 2002 Feb 15;295(5558):1306-11
PMID: 11847345
-
Circular chromosome conformation capture (4C) uncovers extensive networks of epigenetically regulated intra- and interchromosomal interactions.
Nat Genet. 2006 Nov;38(11):1341-7
PMID: 17033624
-
Cloning and characterization of zebrafish CTCF: Developmental expression patterns, regulation of the promoter region, and evolutionary aspects of gene organization.
Gene. 2006 Jun 21;375:26-36
PMID: 16647825
-
How are cohesin rings opened and closed?
Trends Biochem Sci. 2007 Apr;32(4):154-7
PMID: 17320400
-
Epigenetic regulation of the human retinoblastoma tumor suppressor gene promoter by CTCF.
Cancer Res. 2007 Mar 15;67(6):2577-85
PMID: 17363576
-
Transvection mediated by the translocated cyclin D1 locus in mantle cell lymphoma.
J Exp Med. 2008 Aug 4;205(8):1843-58
PMID: 18625744
-
CTCF cis-regulates trinucleotide repeat instability in an epigenetic manner: a novel basis for mutational hot spot determination.
PLoS Genet. 2008 Nov;4(11):e1000257
PMID: 19008940
-
Chromatin structure is implicated in "late" elongation checkpoints on the U2 snRNA and beta-actin genes.
Mol Cell Biol. 2009 Jul;29(14):4002-13
PMID: 19451231
-
Chromatin organization in the mammalian nucleus.
Int Rev Cytol. 2005;242:283-336
PMID: 15598472
-
CTCF interacts with and recruits the largest subunit of RNA polymerase II to CTCF target sites genome-wide.
Mol Cell Biol. 2007 Mar;27(5):1631-48
PMID: 17210645
-
Beyond the sequence: cellular organization of genome function.
Cell. 2007 Feb 23;128(4):787-800
PMID: 17320514
-
The nucleotides responsible for the direct physical contact between the chromatin insulator protein CTCF and the H19 imprinting control region manifest parent of origin-specific long-distance insulation and methylation-free domains.
Genes Dev. 2003 Mar 1;17(5):586-90
PMID: 12629040
-
The protein CTCF is required for the enhancer blocking activity of vertebrate insulators.
Cell. 1999 Aug 6;98(3):387-96
PMID: 10458613
-
The meaning of gene positioning.
Cell. 2008 Oct 3;135(1):9-13
PMID: 18854147
-
CTCF, a conserved nuclear factor required for optimal transcriptional activity of the chicken c-myc gene, is an 11-Zn-finger protein differentially expressed in multiple forms.
Mol Cell Biol. 1993 Dec;13(12):7612-24
PMID: 8246978
-
CTCF binding at the H19 imprinting control region mediates maternally inherited higher-order chromatin conformation to restrict enhancer access to Igf2.
Proc Natl Acad Sci U S A. 2006 Jul 11;103(28):10684-9
PMID: 16815976
-
Geometric analysis and comparison of protein-DNA interfaces: why is there no simple code for recognition?
J Mol Biol. 2000 Aug 18;301(3):597-624
PMID: 10966773