Home LiteratureArticle Details
PMID: 17875746 Published · ppublish English Journal Article Research Support, N.I.H., Extramural

Nuclear mRNA export requires specific FG nucleoporins for translocation through the nuclear pore complex.

The Journal of cell biology ·Vol. 178 ·No. 7 ·2007-09-24 ·Pages 1121-32

Terry LJ, Wente SR

Abstract

Trafficking of nucleic acids and large proteins through nuclear pore complexes (NPCs) requires interactions with NPC proteins that harbor FG (phenylalanine-glycine) repeat domains. Specialized transport receptors that recognize cargo and bind FG domains facilitate these interactions. Whether different transport receptors utilize preferential FG domains in intact NPCs is not fully resolved. In this study, we use a large-scale deletion strategy in Saccharomyces cerevisiae to generate a new set of more minimal pore (mmp) mutants that lack specific FG domains. A comparison of messenger RNA (mRNA) export versus protein import reveals unique subsets of mmp mutants with functional defects in specific transport receptors. Thus, multiple functionally independent NPC translocation routes exist for different transport receptors. Our global analysis of the FG domain requirements in mRNA export also finds a requirement for two NPC substructures-one on the nuclear NPC face and one in the NPC central core. These results pinpoint distinct steps in the mRNA export mechanism that regulate NPC translocation efficiency.

MeSH Terms
Active Transport, Cell Nucleus Cell Nucleus/metabolism Mutation/genetics Nuclear Pore/metabolism Nuclear Pore Complex Proteins/chemistry,metabolism Nuclear Proteins/metabolism Nucleocytoplasmic Transport Proteins/metabolism Poly A/metabolism Protein Binding Protein Structure, Tertiary Protein Transport RNA Transport RNA, Messenger/metabolism RNA-Binding Proteins/metabolism Saccharomyces cerevisiae/cytology,metabolism Saccharomyces cerevisiae Proteins/metabolism Structure-Activity Relationship Temperature beta Karyopherins/metabolism
Chemicals
MEX67 protein, S cerevisiae NUP57 protein, S cerevisiae Nuclear Pore Complex Proteins Nuclear Proteins Nucleocytoplasmic Transport Proteins RNA, Messenger RNA-Binding Proteins Saccharomyces cerevisiae Proteins beta Karyopherins Poly A
Authors & Affiliations
2 authors, click to expand affiliations / ORCID
Terry Laura J
Department of Cell and Developmental Biology, Vanderbilt University Medical Center, Nashville, TN 37232, USA.
Wente Susan R
References (74)
74 references, click to expand
  1. Structural basis for the recognition of a nucleoporin FG repeat by the NTF2-like domain of the TAP/p15 mRNA nuclear export factor.
    Mol Cell. 2001 Sep;8(3):645-56 PMID: 11583626
  2. Molecular architecture of the yeast nuclear pore complex: localization of Nsp1p subcomplexes.
    J Cell Biol. 1998 Nov 2;143(3):577-88 PMID: 9813081
  3. GLE2, a Saccharomyces cerevisiae homologue of the Schizosaccharomyces pombe export factor RAE1, is required for nuclear pore complex structure and function.
    Mol Biol Cell. 1996 Dec;7(12):1921-37 PMID: 8970155
  4. Nuclear import of Spo12p, a protein essential for meiosis.
    J Biol Chem. 2001 May 25;276(21):17712-7 PMID: 11278742
  5. Simple kinetic relationships and nonspecific competition govern nuclear import rates in vivo.
    J Cell Biol. 2006 Nov 20;175(4):579-93 PMID: 17116750
  6. Pores for thought: nuclear pore complex proteins.
    Trends Cell Biol. 1994 Oct;4(10):357-65 PMID: 14731624
  7. The N-terminal domain of Nup159 forms a beta-propeller that functions in mRNA export by tethering the helicase Dbp5 to the nuclear pore.
    Mol Cell. 2004 Dec 3;16(5):749-60 PMID: 15574330
  8. The GLFG repetitive region of the nucleoporin Nup116p interacts with Kap95p, an essential yeast nuclear import factor.
    J Cell Biol. 1995 Dec;131(6 Pt 2):1699-713 PMID: 8557738
  9. Virtual gating and nuclear transport: the hole picture.
    Trends Cell Biol. 2003 Dec;13(12):622-8 PMID: 14624840
  10. Partial nuclear pore complex disassembly during closed mitosis in Aspergillus nidulans.
    Curr Biol. 2004 Nov 23;14(22):1973-84 PMID: 15556859
  11. Structural basis for Nup2p function in cargo release and karyopherin recycling in nuclear import.
    EMBO J. 2003 Oct 15;22(20):5358-69 PMID: 14532109
  12. Transport into and out of the nucleus.
    Microbiol Mol Biol Rev. 2001 Dec;65(4):570-94, table of contents PMID: 11729264
  13. The GLFG regions of Nup116p and Nup100p serve as binding sites for both Kap95p and Mex67p at the nuclear pore complex.
    J Biol Chem. 2001 Mar 2;276(9):6445-52 PMID: 11104765
  14. Proteomic analysis of the mammalian nuclear pore complex.
    J Cell Biol. 2002 Sep 2;158(5):915-27 PMID: 12196509
  15. Kinetic analysis of translocation through nuclear pore complexes.
    EMBO J. 2001 Mar 15;20(6):1320-30 PMID: 11250898
  16. Systematic deletion and mitotic localization of the nuclear pore complex proteins of Aspergillus nidulans.
    Mol Biol Cell. 2006 Dec;17(12):4946-61 PMID: 16987955
  17. The RNA export factor Gle1p is located on the cytoplasmic fibrils of the NPC and physically interacts with the FG-nucleoporin Rip1p, the DEAD-box protein Rat8p/Dbp5p and a new protein Ymr 255p.
    EMBO J. 1999 Oct 15;18(20):5761-77 PMID: 10610322
  18. Yeast heat shock mRNAs are exported through a distinct pathway defined by Rip1p.
    Genes Dev. 1997 Nov 1;11(21):2845-56 PMID: 9353254
  19. The DEAD-box protein Dbp5p is required to dissociate Mex67p from exported mRNPs at the nuclear rim.
    Mol Cell. 2005 Nov 23;20(4):645-51 PMID: 16307927
  20. Disorder in the nuclear pore complex: the FG repeat regions of nucleoporins are natively unfolded.
    Proc Natl Acad Sci U S A. 2003 Mar 4;100(5):2450-5 PMID: 12604785
  21. Structural basis for the interaction between NTF2 and nucleoporin FxFG repeats.
    EMBO J. 2002 Jun 17;21(12):2843-53 PMID: 12065398
  22. Nuclear import time and transport efficiency depend on importin beta concentration.
    J Cell Biol. 2006 Sep 25;174(7):951-61 PMID: 16982803
  23. The permeability barrier of nuclear pore complexes appears to operate via hydrophobic exclusion.
    EMBO J. 2002 Jun 3;21(11):2664-71 PMID: 12032079
  24. Nuclear import of Ran is mediated by the transport factor NTF2.
    Curr Biol. 1998 Dec 17-31;8(25):1403-6 PMID: 9889103
  25. A new family of yeast nuclear pore complex proteins.
    J Cell Biol. 1992 Nov;119(4):705-23 PMID: 1385442
  26. Influenza A virus NS2 protein mediates vRNP nuclear export through NES-independent interaction with hCRM1.
    EMBO J. 2000 Dec 15;19(24):6751-8 PMID: 11118210
  27. Nuclear RNA export in yeast.
    FEBS Lett. 1999 Jun 4;452(1-2):77-81 PMID: 10376682
  28. Flexible phenylalanine-glycine nucleoporins as entropic barriers to nucleocytoplasmic transport.
    Proc Natl Acad Sci U S A. 2006 Jun 20;103(25):9512-7 PMID: 16769882
  29. mRNA export: the long and winding road.
    Nat Cell Biol. 2000 Apr;2(4):E55-8 PMID: 10783248
  30. Exportin 1 (Crm1p) is an essential nuclear export factor.
    Cell. 1997 Sep 19;90(6):1041-50 PMID: 9323132
  31. Complex formation among the RNA export proteins Nup98, Rae1/Gle2, and TAP.
    J Biol Chem. 2003 Jun 6;278(23):20979-88 PMID: 12637516
  32. GLFG and FxFG nucleoporins bind to overlapping sites on importin-beta.
    J Biol Chem. 2002 Dec 27;277(52):50597-606 PMID: 12372823
  33. Dbp5, a DEAD-box protein required for mRNA export, is recruited to the cytoplasmic fibrils of nuclear pore complex via a conserved interaction with CAN/Nup159p.
    EMBO J. 1999 Aug 2;18(15):4332-47 PMID: 10428971
  34. The yeast nuclear pore complex: composition, architecture, and transport mechanism.
    J Cell Biol. 2000 Feb 21;148(4):635-51 PMID: 10684247
  35. Mechanisms of receptor-mediated nuclear import and nuclear export.
    Traffic. 2005 Mar;6(3):187-98 PMID: 15702987
  36. A systems view of mRNP biology.
    Genes Dev. 2004 Dec 1;18(23):2845-60 PMID: 15574591
  37. Interaction of the influenza virus nucleoprotein with the cellular CRM1-mediated nuclear export pathway.
    J Virol. 2001 Jan;75(1):408-19 PMID: 11119609
  38. Translocation through the nuclear pore complex.
    Trends Biochem Sci. 2002 Dec;27(12):593-6 PMID: 12468221
  39. The yeast nucleoporin rip1p contributes to multiple export pathways with no essential role for its FG-repeat region.
    Genes Dev. 1997 Nov 1;11(21):2857-68 PMID: 9353255
  40. Structural basis for the interaction between FxFG nucleoporin repeats and importin-beta in nuclear trafficking.
    Cell. 2000 Jul 7;102(1):99-108 PMID: 10929717
  41. Kap104p: a karyopherin involved in the nuclear transport of messenger RNA binding proteins.
    Science. 1996 Oct 25;274(5287):624-7 PMID: 8849456
  42. Purification of NSP1 reveals complex formation with 'GLFG' nucleoporins and a novel nuclear pore protein NIC96.
    EMBO J. 1993 Aug;12(8):3061-71 PMID: 7688296
  43. The Mex67p-mediated nuclear mRNA export pathway is conserved from yeast to human.
    EMBO J. 1999 May 4;18(9):2593-609 PMID: 10228171
  44. The nuclear pore complex: nucleocytoplasmic transport and beyond.
    Nat Rev Mol Cell Biol. 2003 Oct;4(10):757-66 PMID: 14570049
  45. A new efficient gene disruption cassette for repeated use in budding yeast.
    Nucleic Acids Res. 1996 Jul 1;24(13):2519-24 PMID: 8692690
  46. Dbp5p/Rat8p is a yeast nuclear pore-associated DEAD-box protein essential for RNA export.
    EMBO J. 1998 May 1;17(9):2663-76 PMID: 9564048
  47. In vitro reconstitution of a heterotrimeric nucleoporin complex consisting of recombinant Nsp1p, Nup49p, and Nup57p.
    Mol Biol Cell. 1997 Jan;8(1):33-46 PMID: 9017593
  48. Minimal nuclear pore complexes define FG repeat domains essential for transport.
    Nat Cell Biol. 2004 Mar;6(3):197-206 PMID: 15039779
  49. Role of nucleoporin induction in releasing an mRNA nuclear export block.
    Science. 2002 Feb 22;295(5559):1523-5 PMID: 11809937
  50. Yeast nucleoporins involved in passive nuclear envelope permeability.
    J Cell Biol. 2000 May 29;149(5):1027-38 PMID: 10831607
  51. Importin beta: conducting a much larger cellular symphony.
    Mol Cell. 2004 Nov 5;16(3):319-30 PMID: 15525506
  52. Binding of the Mex67p/Mtr2p heterodimer to FXFG, GLFG, and FG repeat nucleoporins is essential for nuclear mRNA export.
    J Cell Biol. 2000 Aug 21;150(4):695-706 PMID: 10952996
  53. Rat8p/Dbp5p is a shuttling transport factor that interacts with Rat7p/Nup159p and Gle1p and suppresses the mRNA export defect of xpo1-1 cells.
    EMBO J. 1999 Oct 15;18(20):5778-88 PMID: 10523319
  54. A systems analysis of importin-{alpha}-{beta} mediated nuclear protein import.
    J Cell Biol. 2005 Mar 28;168(7):1027-38 PMID: 15795315
  55. A gradient of affinity for the karyopherin Kap95p along the yeast nuclear pore complex.
    J Biol Chem. 2003 Oct 24;278(43):42699-709 PMID: 12917401
  56. NTF2 mediates nuclear import of Ran.
    EMBO J. 1998 Nov 16;17(22):6587-98 PMID: 9822603
  57. In vivo nuclear transport kinetics in Saccharomyces cerevisiae: a role for heat shock protein 70 during targeting and translocation.
    J Cell Biol. 1996 Oct;135(2):329-39 PMID: 8896592
  58. De novo formation of transitional ER sites and Golgi structures in Pichia pastoris.
    Nat Cell Biol. 2002 Oct;4(10):750-6 PMID: 12360285
  59. Karyopherins and nuclear import.
    Curr Opin Struct Biol. 2001 Dec;11(6):703-15 PMID: 11751052
  60. Nucleocytoplasmic transport: taking an inventory.
    Cell Mol Life Sci. 2003 Aug;60(8):1659-88 PMID: 14504656
  61. From the trap to the basket: getting to the bottom of the nuclear pore complex.
    Chromosoma. 2006 Feb;115(1):15-26 PMID: 16402261
  62. Mex67p, a novel factor for nuclear mRNA export, binds to both poly(A)+ RNA and nuclear pores.
    EMBO J. 1997 Jun 2;16(11):3256-71 PMID: 9214641
  63. Crystallization and initial X-ray diffraction characterization of complexes of FxFG nucleoporin repeats with nuclear transport factors.
    J Struct Biol. 2000 Sep;131(3):240-7 PMID: 11052897
  64. Activation of the DExD/H-box protein Dbp5 by the nuclear-pore protein Gle1 and its coactivator InsP6 is required for mRNA export.
    Nat Cell Biol. 2006 Jul;8(7):668-76 PMID: 16783364
  65. Domain-specific antibodies reveal multiple-site topology of Nup153 within the nuclear pore complex.
    J Struct Biol. 2002 Oct-Dec;140(1-3):254-67 PMID: 12490173
  66. Proteomic analysis of nucleoporin interacting proteins.
    J Biol Chem. 2001 Aug 3;276(31):29268-74 PMID: 11387327
  67. An RNA-export mediator with an essential nuclear export signal.
    Nature. 1996 Sep 26;383(6598):357-60 PMID: 8848052
  68. Peering through the pore: nuclear pore complex structure, assembly, and function.
    Dev Cell. 2003 Jun;4(6):775-89 PMID: 12791264
  69. Nuclear mRNA export requires complex formation between Mex67p and Mtr2p at the nuclear pores.
    Mol Cell Biol. 1998 Nov;18(11):6826-38 PMID: 9774696
  70. Dbp5p, a cytosolic RNA helicase, is required for poly(A)+ RNA export.
    EMBO J. 1998 May 1;17(9):2651-62 PMID: 9564047
  71. FG-rich repeats of nuclear pore proteins form a three-dimensional meshwork with hydrogel-like properties.
    Science. 2006 Nov 3;314(5800):815-7 PMID: 17082456
  72. Inositol hexakisphosphate and Gle1 activate the DEAD-box protein Dbp5 for nuclear mRNA export.
    Nat Cell Biol. 2006 Jul;8(7):711-6 PMID: 16783363
  73. Regulating access to the genome: nucleocytoplasmic transport throughout the cell cycle.
    Cell. 2003 Feb 21;112(4):441-51 PMID: 12600309
  74. The mRNA export machinery requires the novel Sac3p-Thp1p complex to dock at the nucleoplasmic entrance of the nuclear pores.
    EMBO J. 2002 Nov 1;21(21):5843-52 PMID: 12411502
Article Info
Journal
The Journal of cell biology
Abbr.
J Cell Biol
ISSN
0021-9525
Published
2007-09-24
Epub
2007-00-17
Pages
1121-32
Language
English
Region
United States
NLM ID
0375356
PMCID
PMC2064648
Subset
IM
Grants
NIGMS NIH HHS · R01 GM051219 · United States
NCI NIH HHS · T32 CA009385 · United States
NCI NIH HHS · 5T32-CA009385 · United States
NIGMS NIH HHS · R01-GM51219 · United States
Analysis Services
Analysis Services

Contact

No. 2 Wenbo Road, Zhangqiu District, Jinan, Shandong

Qilu Normal University · Genelibs Bioinformatics Lab

750 Shunhua Rd, Jinan

2F, Bldg F, University Science Park

Tel: 0531-88819269

WeChat Official Account

Follow our WeChat subscription account for real-time updates and the latest in medical and biological research.


Business Email

E-mail: product@genelibs.com