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PMID: 15165230 Published · ppublish English Journal Article Research Support, Non-U.S. Gov't Research Support, U.S. Gov't, P.H.S.

Screening for synthetic lethal mutants in Escherichia coli and identification of EnvC (YibP) as a periplasmic septal ring factor with murein hydrolase activity.

Molecular microbiology ·Vol. 52 ·No. 5 ·2004-06-00 ·Pages 1255-69

Bernhardt TG, de Boer PA

Abstract

Bacterial cytokinesis is driven by the septal ring apparatus, the assembly of which in Escherichia coli is directed to mid-cell by the Min system. Despite suffering aberrant divisions at the poles, cells lacking the minCDE operon (Min(-)) have an almost normal growth rate. We developed a generally applicable screening method for synthetic lethality in E. coli, and used it to select for transposon mutations (slm) that are synthetically lethal (or sick) in combination with DeltaminCDE. One of the slm insertions mapped to envC (yibP), proposed to encode a lysostaphin-like, metallo-endopeptidase that is exported to the periplasm by the general secretory (Sec) pathway. Min(-) EnvC(-) cells showed a severe division defect, supporting a role for EnvC in septal ring function. Accordingly, we show that an EnvC-green fluorescent protein fusion, when directed to the periplasm via the twin-arginine export system, is both functional and part of the septal ring apparatus. Using an in-gel assay, we also present evidence that EnvC possesses murein hydrolytic activity. Our results suggest that EnvC plays a direct role in septal murein cleavage to allow outer membrane constriction and daughter cell separation. By uncovering genetic interactions, the synthetic lethal screen described here provides an attractive new tool for studying gene function in E. coli.

MeSH Terms
Cell Division Endopeptidases/genetics,metabolism Escherichia coli/cytology,genetics,metabolism Escherichia coli Proteins/genetics,metabolism Mutation N-Acetylmuramoyl-L-alanine Amidase/metabolism Operon Peptidoglycan/metabolism Phenotype Recombinant Fusion Proteins/metabolism
Chemicals
Escherichia coli Proteins Peptidoglycan Recombinant Fusion Proteins Endopeptidases EnvC protein, E coli N-Acetylmuramoyl-L-alanine Amidase
Authors & Affiliations
2 authors, click to expand affiliations / ORCID
Bernhardt Thomas G
Case Western Reserve University, School of Medicine, W239, Department of Molecular Biology and Microbiology, 10900 Euclid Ave., Cleveland, OH 44106, USA.
de Boer Piet A J
References (74)
74 references, click to expand
  1. Dynamic compartmentalization of bacteria: accurate division in E. coli.
    Phys Rev Lett. 2001 Dec 31;87(27 Pt 1):278102 PMID: 11800919
  2. A low-copy-number vector utilizing beta-galactosidase for the analysis of gene control elements.
    Gene. 1987;52(2-3):245-56 PMID: 3038688
  3. Green fluorescent protein functions as a reporter for protein localization in Escherichia coli.
    J Bacteriol. 2000 Jul;182(14):4068-76 PMID: 10869087
  4. FtsQ, FtsL and FtsI require FtsK, but not FtsN, for co-localization with FtsZ during Escherichia coli cell division.
    Mol Microbiol. 2001 Oct;42(2):395-413 PMID: 11703663
  5. Deletion of the min operon results in increased thermosensitivity of an ftsZ84 mutant and abnormal FtsZ ring assembly, placement, and disassembly.
    J Bacteriol. 2000 Nov;182(21):6203-13 PMID: 11029443
  6. MinDE-dependent pole-to-pole oscillation of division inhibitor MinC in Escherichia coli.
    J Bacteriol. 1999 Oct;181(20):6419-24 PMID: 10515933
  7. Use of a screen for synthetic lethal and multicopy suppressee mutants to identify two new genes involved in morphogenesis in Saccharomyces cerevisiae.
    Mol Cell Biol. 1991 Mar;11(3):1295-305 PMID: 1996092
  8. Recruitment of MinC, an inhibitor of Z-ring formation, to the membrane in Escherichia coli: role of MinD and MinE.
    J Bacteriol. 2003 Jan;185(1):196-203 PMID: 12486056
  9. A cytoskeleton-like role for the bacterial cell wall during engulfment of the Bacillus subtilis forespore.
    Genes Dev. 2002 Dec 15;16(24):3253-64 PMID: 12502745
  10. Exploring intracellular space: function of the Min system in round-shaped Escherichia coli.
    EMBO J. 2002 Apr 15;21(8):1998-2008 PMID: 11953319
  11. The MinD protein is a membrane ATPase required for the correct placement of the Escherichia coli division site.
    EMBO J. 1991 Dec;10(13):4371-80 PMID: 1836760
  12. Division site selection in Escherichia coli involves dynamic redistribution of Min proteins within coiled structures that extend between the two cell poles.
    Proc Natl Acad Sci U S A. 2003 Jun 24;100(13):7865-70 PMID: 12766229
  13. Recruitment of ZipA to the septal ring of Escherichia coli is dependent on FtsZ and independent of FtsA.
    J Bacteriol. 1999 Jan;181(1):167-76 PMID: 9864327
  14. Topological regulation of cell division in E. coli. spatiotemporal oscillation of MinD requires stimulation of its ATPase by MinE and phospholipid.
    Mol Cell. 2001 Jun;7(6):1337-43 PMID: 11430835
  15. Lysostaphin endopeptidase-catalysed transpeptidation reactions of the imino-transfer type.
    Biochem J. 1977 Oct 1;167(1):293-6 PMID: 588262
  16. The nlpD gene is located in an operon with rpoS on the Escherichia coli chromosome and encodes a novel lipoprotein with a potential function in cell wall formation.
    Mol Microbiol. 1994 Aug;13(4):733-43 PMID: 7997184
  17. "Division potential" in Escherichia coli.
    J Bacteriol. 1996 Oct;178(20):5971-6 PMID: 8830694
  18. Pattern formation in Escherichia coli: a model for the pole-to-pole oscillations of Min proteins and the localization of the division site.
    Proc Natl Acad Sci U S A. 2001 Dec 4;98(25):14202-7 PMID: 11734639
  19. Dynamic structures in Escherichia coli: spontaneous formation of MinE rings and MinD polar zones.
    Proc Natl Acad Sci U S A. 2003 Oct 28;100(22):12724-8 PMID: 14569005
  20. An essential component of a novel bacterial protein export system with homologues in plastids and mitochondria.
    J Biol Chem. 1998 Jul 17;273(29):18003-6 PMID: 9660752
  21. High efficiency transformation of E. coli by high voltage electroporation.
    Nucleic Acids Res. 1988 Jul 11;16(13):6127-45 PMID: 3041370
  22. Morphological mutants of Escherichia coli. Isolation and ultrastructure of a chain-forming envC mutant.
    J Gen Microbiol. 1973 Apr;75(2):409-16 PMID: 4574921
  23. An efficient recombination system for chromosome engineering in Escherichia coli.
    Proc Natl Acad Sci U S A. 2000 May 23;97(11):5978-83 PMID: 10811905
  24. Defective and plaque-forming lambda transducing bacteriophage carrying penicillin-binding protein-cell shape genes: genetic and physical mapping and identification of gene products from the lip-dacA-rodA-pbpA-leuS region of the Escherichia coli chromosome.
    J Bacteriol. 1980 Aug;143(2):569-81 PMID: 6451612
  25. Escherichia coli division inhibitor MinCD blocks septation by preventing Z-ring formation.
    J Bacteriol. 2001 Nov;183(22):6630-5 PMID: 11673433
  26. Molecular cloning and characterization of iojap (ij), a pattern striping gene of maize.
    EMBO J. 1992 Nov;11(11):4037-46 PMID: 1382980
  27. Dynamic assembly of MinD on phospholipid vesicles regulated by ATP and MinE.
    Proc Natl Acad Sci U S A. 2002 May 14;99(10):6761-6 PMID: 11983867
  28. Penicillin-binding protein 2 inactivation in Escherichia coli results in cell division inhibition, which is relieved by FtsZ overexpression.
    J Bacteriol. 1993 Oct;175(20):6704-10 PMID: 8407846
  29. YgbQ, a cell division protein in Escherichia coli and Vibrio cholerae, localizes in codependent fashion with FtsL to the division site.
    Proc Natl Acad Sci U S A. 2002 Apr 30;99(9):6316-21 PMID: 11972052
  30. Role of the Escherichia coli Tat pathway in outer membrane integrity.
    Mol Microbiol. 2003 Jun;48(5):1183-93 PMID: 12787348
  31. FtsZ ring clusters in min and partition mutants: role of both the Min system and the nucleoid in regulating FtsZ ring localization.
    Mol Microbiol. 1999 Apr;32(2):315-26 PMID: 10231488
  32. FtsZ ring structure associated with division in Escherichia coli.
    Nature. 1991 Nov 14;354(6349):161-4 PMID: 1944597
  33. Recruitment of ZipA to the division site by interaction with FtsZ.
    Mol Microbiol. 1999 Mar;31(6):1853-61 PMID: 10209756
  34. Growth of the stress-bearing and shape-maintaining murein sacculus of Escherichia coli.
    Microbiol Mol Biol Rev. 1998 Mar;62(1):181-203 PMID: 9529891
  35. A dynamic model for determining the middle of Escherichia coli.
    Biophys J. 2002 Feb;82(2):618-27 PMID: 11806906
  36. Initiation of biofilm formation in Pseudomonas fluorescens WCS365 proceeds via multiple, convergent signalling pathways: a genetic analysis.
    Mol Microbiol. 1998 May;28(3):449-61 PMID: 9632250
  37. A protein methyltransferase specific for altered aspartyl residues is important in Escherichia coli stationary-phase survival and heat-shock resistance.
    Proc Natl Acad Sci U S A. 1992 Oct 15;89(20):9885-9 PMID: 1409717
  38. Unique and overlapping roles for ZipA and FtsA in septal ring assembly in Escherichia coli.
    EMBO J. 2002 Feb 15;21(4):685-93 PMID: 11847116
  39. Involvement of N-acetylmuramyl-L-alanine amidases in cell separation and antibiotic-induced autolysis of Escherichia coli.
    Mol Microbiol. 2001 Jul;41(1):167-78 PMID: 11454209
  40. Analysis of the effect of ppGpp on the ftsQAZ operon in Escherichia coli.
    Mol Microbiol. 1998 Aug;29(3):815-23 PMID: 9723920
  41. FACS-optimized mutants of the green fluorescent protein (GFP).
    Gene. 1996;173(1 Spec No):33-8 PMID: 8707053
  42. Murein segregation in Escherichia coli.
    J Bacteriol. 1997 May;179(9):2823-34 PMID: 9139895
  43. Quantal behavior of a diffusible factor which initiates septum formation at potential division sites in Escherichia coli.
    J Bacteriol. 1974 May;118(2):407-13 PMID: 4597442
  44. Identification of a sex-factor-affinity site in E. coli as gamma delta.
    Cold Spring Harb Symp Quant Biol. 1981;45 Pt 1:135-40 PMID: 6271456
  45. Cloning and expression of a Staphylococcus aureus gene encoding a peptidoglycan hydrolase activity.
    J Bacteriol. 1990 Oct;172(10):5783-8 PMID: 1976618
  46. Selected amplification of the cell division genes ftsQ-ftsA-ftsZ in Escherichia coli.
    Genetics. 2000 Dec;156(4):1483-92 PMID: 11102351
  47. ZipA is required for recruitment of FtsK, FtsQ, FtsL, and FtsN to the septal ring in Escherichia coli.
    J Bacteriol. 2002 May;184(9):2552-6 PMID: 11948172
  48. ZipA is required for targeting of DMinC/DicB, but not DMinC/MinD, complexes to septal ring assemblies in Escherichia coli.
    J Bacteriol. 2004 Apr;186(8):2418-29 PMID: 15060045
  49. A widely conserved bacterial cell division protein that promotes assembly of the tubulin-like protein FtsZ.
    Genes Dev. 2002 Oct 1;16(19):2544-56 PMID: 12368265
  50. Translocation of jellyfish green fluorescent protein via the Tat system of Escherichia coli and change of its periplasmic localization in response to osmotic up-shock.
    J Biol Chem. 2001 Mar 16;276(11):8159-64 PMID: 11099493
  51. Targeting of (D)MinC/MinD and (D)MinC/DicB complexes to septal rings in Escherichia coli suggests a multistep mechanism for MinC-mediated destruction of nascent FtsZ rings.
    J Bacteriol. 2002 Jun;184(11):2951-62 PMID: 12003935
  52. Proteolytic activity of YibP protein in Escherichia coli.
    J Bacteriol. 2002 May;184(10):2595-602 PMID: 11976287
  53. The MinC component of the division site selection system in Escherichia coli interacts with FtsZ to prevent polymerization.
    Proc Natl Acad Sci U S A. 1999 Dec 21;96(26):14819-24 PMID: 10611296
  54. Dynamic assembly of MinD into filament bundles modulated by ATP, phospholipids, and MinE.
    Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16776-81 PMID: 12482939
  55. Topological regulation of cell division in Escherichia coli involves rapid pole to pole oscillation of the division inhibitor MinC under the control of MinD and MinE.
    Mol Microbiol. 1999 Oct;34(1):82-90 PMID: 10540287
  56. Roles of FtsA and FtsZ in activation of division sites.
    J Bacteriol. 1998 Feb;180(4):881-4 PMID: 9473042
  57. Cytokinesis in bacteria.
    Microbiol Mol Biol Rev. 2003 Mar;67(1):52-65, table of contents PMID: 12626683
  58. Dynamic localization cycle of the cell division regulator MinE in Escherichia coli.
    EMBO J. 2001 Apr 2;20(7):1563-72 PMID: 11285221
  59. A division inhibitor and a topological specificity factor coded for by the minicell locus determine proper placement of the division septum in E. coli.
    Cell. 1989 Feb 24;56(4):641-9 PMID: 2645057
  60. Rapid pole-to-pole oscillation of a protein required for directing division to the middle of Escherichia coli.
    Proc Natl Acad Sci U S A. 1999 Apr 27;96(9):4971-6 PMID: 10220403
  61. Export of active green fluorescent protein to the periplasm by the twin-arginine translocase (Tat) pathway in Escherichia coli.
    Mol Microbiol. 2001 Jan;39(1):47-53 PMID: 11123687
  62. The Escherichia coli amidase AmiC is a periplasmic septal ring component exported via the twin-arginine transport pathway.
    Mol Microbiol. 2003 Jun;48(5):1171-82 PMID: 12787347
  63. The Pfam protein families database.
    Nucleic Acids Res. 2002 Jan 1;30(1):276-80 PMID: 11752314
  64. Effects of multiple deletions of murein hydrolases on viability, septum cleavage, and sensitivity to large toxic molecules in Escherichia coli.
    J Bacteriol. 2002 Nov;184(22):6093-9 PMID: 12399477
  65. Identification and characterization of the Escherichia coli envC gene encoding a periplasmic coiled-coil protein with putative peptidase activity.
    FEMS Microbiol Lett. 2002 Jul 2;212(2):229-36 PMID: 12113939
  66. Cell division in Escherichia coli minB mutants.
    Mol Microbiol. 1992 Aug;6(15):2073-83 PMID: 1406249
  67. ATP-dependent interactions between Escherichia coli Min proteins and the phospholipid membrane in vitro.
    J Bacteriol. 2003 Feb;185(3):735-49 PMID: 12533449
  68. Transposition and fusion of the lac genes to selected promoters in Escherichia coli using bacteriophage lambda and Mu.
    J Mol Biol. 1976 Jul 5;104(3):541-55 PMID: 781293
  69. One-step inactivation of chromosomal genes in Escherichia coli K-12 using PCR products.
    Proc Natl Acad Sci U S A. 2000 Jun 6;97(12):6640-5 PMID: 10829079
  70. ZipA-induced bundling of FtsZ polymers mediated by an interaction between C-terminal domains.
    J Bacteriol. 2000 Sep;182(18):5153-66 PMID: 10960100
  71. Cloning, sequence, and expression of the lysostaphin gene from Staphylococcus simulans.
    Proc Natl Acad Sci U S A. 1987 Mar;84(5):1127-31 PMID: 3547405
  72. A gene at 59 minutes on the Escherichia coli chromosome encodes a lipoprotein with unusual amino acid repeat sequences.
    J Bacteriol. 1994 Mar;176(6):1630-8 PMID: 8132457
  73. Actively replicating nucleoids influence positioning of division sites in Escherichia coli filaments forming cells lacking DNA.
    J Bacteriol. 1989 Aug;171(8):4303-14 PMID: 2666394
  74. Assembly of the FtsZ ring at the central division site in the absence of the chromosome.
    Mol Microbiol. 1998 Jul;29(2):491-503 PMID: 9720867
Article Info
Journal
Molecular microbiology
Abbr.
Mol Microbiol
ISSN
0950-382X
Published
2004-06-00
Pages
1255-69
Language
English
Region
England
NLM ID
8712028
PMCID
PMC4428336
Subset
IM
Grants
NIGMS NIH HHS · R01 GM057059 · United States
NIGMS NIH HHS · R01 GM057059-05 · United States
NIGMS NIH HHS · R01 GM057059-06 · United States
NIGMS NIH HHS · GM57059 · United States
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