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PMID: 11423011 Published · ppublish English Comparative Study Journal Article Review

Evolution of mammalian genome organization inferred from comparative gene mapping.

Genome biology ·Vol. 2 ·No. 6 ·2001-00-00 ·Pages REVIEWS0005

Murphy WJ, Stanyon R, O'Brien SJ

Abstract

Comparative genome analyses, including chromosome painting in over 40 diverse mammalian species, ordered gene maps from several representatives of different mammalian and vertebrate orders, and large-scale sequencing of the human and mouse genomes are beginning to provide insight into the rates and patterns of chromosomal evolution on a whole-genome scale, as well as into the forces that have sculpted the genomes of extant mammalian species.

MeSH Terms
Animals Chromosome Mapping Chromosome Painting Evolution, Molecular Genome Humans Phylogeny
Authors & Affiliations
3 authors, click to expand affiliations / ORCID
Murphy W J
Laboratory of Genomic Diversity, National Cancer Institute, Frederick, MD 21702-1201, USA. murphywi@mail.ncifcrf.gov
Stanyon R
O'Brien S J
References (65)
65 references, click to expand
  1. Conservation of autosomal gene synteny groups in mouse and man.
    Nature. 1978 Jul 13;274(5667):160-3 PMID: 662012
  2. It takes two transposons to tango: transposable-element-mediated chromosomal rearrangements.
    Trends Genet. 2000 Oct;16(10):461-8 PMID: 11050333
  3. A radiation hybrid map of the cat genome: implications for comparative mapping.
    Genome Res. 2000 May;10(5):691-702 PMID: 10810092
  4. Conserved regions of homologous G-banded chromosomes between orders in mammalian evolution: carnivores and primates.
    Proc Natl Acad Sci U S A. 1982 Nov;79(21):6631-5 PMID: 6959143
  5. Synteny conservation and chromosome rearrangements during mammalian evolution.
    Genetics. 1997 Sep;147(1):289-96 PMID: 9286688
  6. An ordered comparative map of the cattle and human genomes.
    Genome Res. 2000 Sep;10(9):1359-68 PMID: 10984454
  7. Radiation hybrid mapping of the zebrafish genome.
    Proc Natl Acad Sci U S A. 1999 Aug 17;96(17):9745-50 PMID: 10449765
  8. Genomic homology of the domestic ferret with cats and humans.
    Mamm Genome. 2000 Oct;11(10):866-70 PMID: 11003701
  9. Cross-species chromosome painting between human and marsupial directly demonstrates the ancient region of the mammalian X.
    Mamm Genome. 1999 Nov;10(11):1115-6 PMID: 10556436
  10. Genetic mapping in mammals: chromosome map of domestic cat.
    Science. 1982 Apr 16;216(4543):257-65 PMID: 7063884
  11. A radiation hybrid map of the zebrafish genome.
    Nat Genet. 1999 Sep;23(1):86-9 PMID: 10471505
  12. A first-generation porcine whole-genome radiation hybrid map.
    Mamm Genome. 1999 Aug;10(8):824-30 PMID: 10430669
  13. Phylogenomics. Ancestral primate viewed.
    Nature. 1999 Nov 25;402(6760):365-6 PMID: 10586870
  14. ZOO-FISH analysis in a species of the order Chiroptera: Glossophaga soricina (Phyllostomidae).
    Chromosome Res. 1999;7(1):57-64 PMID: 10219733
  15. Comparative genomics: tracking chromosome evolution in the family ursidae using reciprocal chromosome painting.
    Cytogenet Cell Genet. 1998;83(3-4):182-92 PMID: 10072575
  16. Chromosome evolution: the junction of mammalian chromosomes in the formation of mouse chromosome 10.
    Genome Res. 2000 Oct;10(10):1463-7 PMID: 11042146
  17. Minisatellites: mutability and genome architecture.
    Genome Res. 2000 Jul;10(7):899-907 PMID: 10899139
  18. Comparative gene mapping: a fine-scale survey of chromosome rearrangements between ruminants and humans.
    Genome Res. 1998 Sep;8(9):901-15 PMID: 9750190
  19. Chromosome painting in mammals as an approach to comparative genomics.
    Curr Opin Genet Dev. 1995 Dec;5(6):792-7 PMID: 8745079
  20. Generation of a high-density rat EST map.
    Genome Res. 2001 Mar;11(3):497-502 PMID: 11230173
  21. Lengths of chromosomal segments conserved since divergence of man and mouse.
    Proc Natl Acad Sci U S A. 1984 Feb;81(3):814-8 PMID: 6583681
  22. The dynamics of chromosome evolution in birds and mammals.
    Nature. 1999 Nov 25;402(6760):411-3 PMID: 10586880
  23. A genetic linkage map of the baboon (Papio hamadryas) genome based on human microsatellite polymorphisms.
    Genomics. 2000 Aug 1;67(3):237-47 PMID: 10936045
  24. The striking resemblance of high-resolution G-banded chromosomes of man and chimpanzee.
    Science. 1980 Jun 6;208(4448):1145-8 PMID: 7375922
  25. Human chromosomes 3 and 21 are the products of an ancestral gene arrangement that is at least 300 million years old.
    Mamm Genome. 2000 Sep;11(9):806-7 PMID: 10967145
  26. Reciprocal chromosome painting shows that genomic rearrangement between rat and mouse proceeds ten times faster than between humans and cats.
    Cytogenet Cell Genet. 1999;84(3-4):150-5 PMID: 10393417
  27. Comparative genomics: lessons from cats.
    Trends Genet. 1997 Oct;13(10):393-9 PMID: 9351340
  28. An integrated linkage-radiation hybrid map of the canine genome.
    Mamm Genome. 2000 Feb;11(2):120-30 PMID: 10656926
  29. A radiation hybrid map of the rat genome containing 5,255 markers.
    Nat Genet. 1999 May;22(1):27-36 PMID: 10319858
  30. Comparative chromosome painting defines the high rate of karyotype changes between pigs and bovids.
    Mamm Genome. 2001 Jun;12(6):442-9 PMID: 11353391
  31. Comparative maps of human 19p13.3 and mouse chromosome 10 allow identification of sequences at evolutionary breakpoints.
    Genome Res. 2000 Sep;10(9):1369-80 PMID: 10984455
  32. Genome maps 10. Comparative genomics. Mammalian radiations. Wall chart.
    Science. 1999 Oct 15;286(5439):463-78 PMID: 10577209
  33. Phylogenetics. Which mammalian supertree to bark up?
    Science. 2001 Mar 2;291(5509):1709-11 PMID: 11253193
  34. Mammalian genome mapping: lessons and prospects.
    Curr Opin Genet Dev. 1991 Jun;1(1):105-11 PMID: 1840868
  35. Structure of chromosomal duplicons and their role in mediating human genomic disorders.
    Genome Res. 2000 May;10(5):597-610 PMID: 10810082
  36. Chromosome Painting in Marsupials.
    ILAR J. 1998;39(2-3):92-95 PMID: 11528068
  37. Emerging patterns of comparative genome organization in some mammalian species as revealed by Zoo-FISH.
    Genome Res. 1998 Jun;8(6):577-89 PMID: 9647633
  38. Molecular cytogenetic dissection of human chromosomes 3 and 21 evolution.
    Proc Natl Acad Sci U S A. 2000 Jan 4;97(1):206-11 PMID: 10618396
  39. Homologies between human and dolphin chromosomes detected by heterologous chromosome painting.
    Cytogenet Cell Genet. 1998;81(1):18-25 PMID: 9691170
  40. Parallel radiation hybrid mapping: a powerful tool for high-resolution genomic comparison.
    Genome Res. 1998 Jul;8(7):731-6 PMID: 9685320
  41. Reconstruction of genomic rearrangements in great apes and gibbons by chromosome painting.
    Proc Natl Acad Sci U S A. 1992 Sep 15;89(18):8611-5 PMID: 1528869
  42. Radiation hybrid mapping: a somatic cell genetic method for constructing high-resolution maps of mammalian chromosomes.
    Science. 1990 Oct 12;250(4978):245-50 PMID: 2218528
  43. The ancestral karyotype of Carnivora: comparison with that of platyrrhine monkeys.
    Cytogenet Cell Genet. 1983;35(3):200-8 PMID: 6861525
  44. The promise of comparative genomics in mammals.
    Science. 1999 Oct 15;286(5439):458-62, 479-81 PMID: 10521336
  45. Mobile elements and the human genome.
    Nat Rev Genet. 2000 Nov;1(2):134-44 PMID: 11253653
  46. Comparative sequence analysis of 634 kb of the mouse chromosome 16 region of conserved synteny with the human velocardiofacial syndrome region on chromosome 22q11.2.
    Genomics. 2000 Feb 1;63(3):374-83 PMID: 10704284
  47. Anchored reference loci for comparative genome mapping in mammals.
    Nat Genet. 1993 Feb;3(2):103-12 PMID: 8499943
  48. Extensive conservation of sex chromosome organization between cat and human revealed by parallel radiation hybrid mapping.
    Genome Res. 1999 Dec;9(12):1223-30 PMID: 10613845
  49. Defining the ancestral karyotype of all primates by multidirectional chromosome painting between tree shrews, lemurs and humans.
    Chromosoma. 1999 Nov;108(6):393-400 PMID: 10591999
  50. Molecular phylogenetics and the origins of placental mammals.
    Nature. 2001 Feb 1;409(6820):614-8 PMID: 11214319
  51. A genetic linkage map of the mouse: current applications and future prospects.
    Science. 1993 Oct 1;262(5130):57-66 PMID: 8211130
  52. Comparative gene mapping in the domestic cat (Felis catus).
    J Hered. 1997 Sep-Oct;88(5):408-14 PMID: 9378918
  53. Zebrafish comparative genomics and the origins of vertebrate chromosomes.
    Genome Res. 2000 Dec;10(12):1890-902 PMID: 11116085
  54. The sequence of the human genome.
    Science. 2001 Feb 16;291(5507):1304-51 PMID: 11181995
  55. Parallel adaptive radiations in two major clades of placental mammals.
    Nature. 2001 Feb 1;409(6820):610-4 PMID: 11214318
  56. Fluorescence in situ hybridization (FISH) maps chromosomal homologies between the dusky titi and squirrel monkey.
    Am J Primatol. 2000 Feb;50(2):95-107 PMID: 10676707
  57. Comparative chromosome painting discloses homologous segments in distantly related mammals.
    Nat Genet. 1994 Apr;6(4):342-7 PMID: 8054973
  58. The syntenic relationship of the zebrafish and human genomes.
    Genome Res. 2000 Sep;10(9):1351-8 PMID: 10984453
  59. Molecular cytotaxonomy of primates by chromosomal in situ suppression hybridization.
    Genomics. 1990 Oct;8(2):347-50 PMID: 2249853
  60. Phylogenetic origin of human chromosomes 7, 16, and 19 and their homologs in placental mammals.
    Genome Res. 2000 May;10(5):644-51 PMID: 10810086
  61. Reciprocal chromosome painting reveals detailed regions of conserved synteny between the karyotypes of the domestic dog (Canis familiaris) and human.
    Genomics. 1999 Oct 15;61(2):145-55 PMID: 10534400
  62. A method for constructing radiation hybrid maps of whole genomes.
    Nat Genet. 1994 May;7(1):22-8 PMID: 8075634
  63. A brief history of human autosomes.
    Philos Trans R Soc Lond B Biol Sci. 1999 Aug 29;354(1388):1447-70 PMID: 10515002
  64. Complete homology maps of the rabbit (Oryctolagus cuniculus) and human by reciprocal chromosome painting.
    Cytogenet Cell Genet. 1999;86(3-4):317-22 PMID: 10575232
  65. Initial sequencing and analysis of the human genome.
    Nature. 2001 Feb 15;409(6822):860-921 PMID: 11237011
Article Info
Journal
Genome biology
Abbr.
Genome Biol
ISSN
1474-760X
DOI
10.1186/gb-2001-2-6-reviews0005
Email
murphywi@mail.ncifcrf.gov
Published
2001-00-00
Epub
2001-00-05
Pages
REVIEWS0005
Language
English
Region
England
NLM ID
100960660
PMCID
PMC138942
Subset
IM
External Links
PubMed source DOI: 10.1186/gb-2001-2-6-reviews0005 PMC Full Text View journal details
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