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PMID: 11125045 Published · ppublish English Comparative Study Journal Article

Proteome Analysis Database: online application of InterPro and CluSTr for the functional classification of proteins in whole genomes.

Nucleic acids research ·Vol. 29 ·No. 1 ·2001-01-01 ·Pages 44-8

Apweiler R, Biswas M, Fleischmann W, Kanapin A, Karavidopoulou Y, Kersey P, Kriventseva EV, Mittard V, Mulder N, Phan I, Zdobnov E

Abstract

The SWISS-PROT group at EBI has developed the Proteome Analysis Database utilising existing resources and providing comparative analysis of the predicted protein coding sequences of the complete genomes of bacteria, archaea and eukaryotes (http://www.ebi.ac. uk/proteome/). The two main projects used, InterPro and CluSTr, give a new perspective on families, domains and sites and cover 31-67% (InterPro statistics) of the proteins from each of the complete genomes. CluSTr covers the three complete eukaryotic genomes and the incomplete human genome data. The Proteome Analysis Database is accompanied by a program that has been designed to carry out InterPro proteome comparisons for any one proteome against any other one or more of the proteomes in the database.

MeSH Terms
Animals Databases, Factual Genome Genome, Human Humans Information Services Internet Proteins/classification,genetics Proteome
Chemicals
Proteins Proteome
Authors & Affiliations
11 authors, click to expand affiliations / ORCID
Apweiler R
EMBL Outstation, The European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge, CB10 1SD, UK. apweiler@ebi.ac.uk
Biswas M
Fleischmann W
Kanapin A
Karavidopoulou Y
Kersey P
Kriventseva E V
Mittard V
Mulder N
Phan I
Zdobnov E
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Article Info
Journal
Nucleic acids research
Abbr.
Nucleic Acids Res
ISSN
1362-4962
DOI
10.1093/nar/29.1.44
Email
apweiler@ebi.ac.uk
Published
2001-01-01
Pages
44-8
Language
English
Region
England
NLM ID
0411011
PMCID
PMC29822
Subset
IM
External Links
PubMed source DOI: 10.1093/nar/29.1.44 PMC Full Text View journal details
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