Home LiteratureArticle Details
PMID: 9971783 Published · ppublish English Journal Article Research Support, Non-U.S. Gov't Research Support, U.S. Gov't, P.H.S.

Proteolytic processing of the open reading frame 1b-encoded part of arterivirus replicase is mediated by nsp4 serine protease and Is essential for virus replication.

Journal of virology ·Vol. 73 ·No. 3 ·1999-03-00 ·Pages 2027-37

van Dinten LC, Rensen S, Gorbalenya AE, Snijder EJ

Abstract

The open reading frame (ORF) 1b-encoded part of the equine arteritis virus (EAV) replicase is expressed by ribosomal frameshifting during genome translation, which results in the production of an ORF1ab fusion protein (345 kDa). Four ORF1b-encoded processing products, nsp9 (p80), nsp10 (p50), nsp11 (p26), and nsp12 (p12), have previously been identified in EAV-infected cells (L. C. van Dinten, A. L. M. Wassenaar, A. E. Gorbalenya, W. J. M. Spaan, and E. J. Snijder, J. Virol. 70:6625-6633, 1996). In the present study, the generation of these four nonstructural proteins was shown to be mediated by the nsp4 serine protease, which is the main viral protease (E. J. Snijder, A. L. M. Wassenaar, L. C. van Dinten, W. J. M. Spaan, and A. E. Gorbalenya, J. Biol. Chem. 271:4864-4871, 1996). Mutagenesis of candidate cleavage sites revealed that Glu-2370/Ser, Gln-2837/Ser, and Glu-3056/Gly are the probable nsp9/10, nsp10/11, and nsp11/12 junctions, respectively. Mutations which abolished ORF1b protein processing were introduced into a recently developed infectious cDNA clone (L. C. van Dinten, J. A. den Boon, A. L. M. Wassenaar, W. J. M. Spaan, and E. J. Snijder, Proc. Natl. Acad. Sci. USA 94:991-997, 1997). An analysis of these mutants showed that the selective blockage of ORF1b processing affected different stages of EAV reproduction. In particular, the mutant with the nsp10/11 cleavage site mutation Gln-2837-->Pro displayed an unusual phenotype, since it was still capable of RNA synthesis but was incapable of producing infectious virus.

MeSH Terms
Amino Acid Sequence Equartevirus/enzymology,physiology Mutagenesis, Site-Directed Open Reading Frames RNA, Viral/biosynthesis RNA-Dependent RNA Polymerase/genetics,metabolism Serine Endopeptidases/physiology Structure-Activity Relationship Virus Replication
Chemicals
RNA, Viral RNA-Dependent RNA Polymerase Serine Endopeptidases
Authors & Affiliations
4 authors, click to expand affiliations / ORCID
van Dinten L C
Department of Virology, Leiden University Medical Center, Leiden, The Netherlands.
Rensen S
Gorbalenya A E
Snijder E J
References (52)
52 references, click to expand
  1. Identification and characterization of a coronavirus packaging signal.
    J Virol. 1992 Jun;66(6):3522-30 PMID: 1316465
  2. Structural proteins of equine arteritis virus.
    J Virol. 1992 Nov;66(11):6294-303 PMID: 1328669
  3. The 5' end of the equine arteritis virus replicase gene encodes a papainlike cysteine protease.
    J Virol. 1992 Dec;66(12):7040-8 PMID: 1331507
  4. Purification and characterization of poliovirus polypeptide 3CD, a proteinase and a precursor for RNA polymerase.
    J Virol. 1992 Dec;66(12):7481-9 PMID: 1331532
  5. Isolation of a filterable agent causing arteritis of horses and abortion by mares; its differentiation from the equine abortion (influenza) virus.
    Cornell Vet. 1957 Jan;47(1):3-41 PMID: 13397177
  6. Equine arteritis virus is not a togavirus but belongs to the coronaviruslike superfamily.
    J Virol. 1991 Jun;65(6):2910-20 PMID: 1851863
  7. A domain at the 3' end of the polymerase gene is essential for encapsidation of coronavirus defective interfering RNAs.
    J Virol. 1991 Jun;65(6):3219-26 PMID: 2033672
  8. An intragenic revertant of a poliovirus 2C mutant has an uncoating defect.
    J Virol. 1990 Mar;64(3):1102-7 PMID: 2154595
  9. Flavivirus genome organization, expression, and replication.
    Annu Rev Microbiol. 1990;44:649-88 PMID: 2174669
  10. A general method for rapid site-directed mutagenesis using the polymerase chain reaction.
    Gene. 1990 Nov 30;96(1):125-8 PMID: 2265750
  11. The carboxyl-terminal part of the putative Berne virus polymerase is expressed by ribosomal frameshifting and contains sequence motifs which indicate that toro- and coronaviruses are evolutionarily related.
    Nucleic Acids Res. 1990 Aug 11;18(15):4535-42 PMID: 2388833
  12. Coronavirus genome: prediction of putative functional domains in the non-structural polyprotein by comparative amino acid sequence analysis.
    Nucleic Acids Res. 1989 Jun 26;17(12):4847-61 PMID: 2526320
  13. Identification of four conserved motifs among the RNA-dependent polymerase encoding elements.
    EMBO J. 1989 Dec 1;8(12):3867-74 PMID: 2555175
  14. Cysteine proteases of positive strand RNA viruses and chymotrypsin-like serine proteases. A distinct protein superfamily with a common structural fold.
    FEBS Lett. 1989 Jan 30;243(2):103-14 PMID: 2645167
  15. A segment of the 5' nontranslated region of encephalomyocarditis virus RNA directs internal entry of ribosomes during in vitro translation.
    J Virol. 1988 Aug;62(8):2636-43 PMID: 2839690
  16. Eukaryotic transient-expression system based on recombinant vaccinia virus that synthesizes bacteriophage T7 RNA polymerase.
    Proc Natl Acad Sci U S A. 1986 Nov;83(21):8122-6 PMID: 3095828
  17. Viral cysteine proteases are homologous to the trypsin-like family of serine proteases: structural and functional implications.
    Proc Natl Acad Sci U S A. 1988 Nov;85(21):7872-6 PMID: 3186696
  18. Cleavage of structural proteins during the assembly of the head of bacteriophage T4.
    Nature. 1970 Aug 15;227(5259):680-5 PMID: 5432063
  19. Antigenic comparison of equine arteritis virus (EAV) and lactic dehydrogenase virus (LDV); binding of staphylococcal protein A to the nucleocapsid protein of EAV.
    Zentralbl Veterinarmed B. 1983 May;30(4):297-304 PMID: 6191473
  20. Primary structural comparison of RNA-dependent polymerases from plant, animal and bacterial viruses.
    Nucleic Acids Res. 1984 Sep 25;12(18):7269-82 PMID: 6207485
  21. Equine arteritis virus subgenomic RNA transcription: UV inactivation and translation inhibition studies.
    Virology. 1995 Nov 10;213(2):364-72 PMID: 7491761
  22. Polypeptide requirements for assembly of functional Sindbis virus replication complexes: a model for the temporal regulation of minus- and plus-strand RNA synthesis.
    EMBO J. 1994 Jun 15;13(12):2925-34 PMID: 7517863
  23. Comparison of equine arteritis virus isolates using neutralizing monoclonal antibodies and identification of sequence changes in GL associated with neutralization resistance.
    J Gen Virol. 1995 Sep;76 ( Pt 9):2223-33 PMID: 7561759
  24. The arterivirus Nsp2 protease. An unusual cysteine protease with primary structure similarities to both papain-like and chymotrypsin-like proteases.
    J Biol Chem. 1995 Jul 14;270(28):16671-6 PMID: 7622476
  25. Identification and characterization of a serine-like proteinase of the murine coronavirus MHV-A59.
    J Virol. 1995 Jun;69(6):3554-9 PMID: 7745703
  26. Characterization of a human coronavirus (strain 229E) 3C-like proteinase activity.
    J Virol. 1995 Jul;69(7):4331-8 PMID: 7769694
  27. Characterisation and mutational analysis of an ORF 1a-encoding proteinase domain responsible for proteolytic processing of the infectious bronchitis virus 1a/1b polyprotein.
    Virology. 1995 Jun 1;209(2):420-7 PMID: 7778277
  28. The alphaviruses: gene expression, replication, and evolution.
    Microbiol Rev. 1994 Sep;58(3):491-562 PMID: 7968923
  29. Proteolytic processing of the replicase ORF1a protein of equine arteritis virus.
    J Virol. 1994 Sep;68(9):5755-64 PMID: 8057457
  30. Transduction of a human RNA sequence by poliovirus.
    J Virol. 1994 Oct;68(10):6547-52 PMID: 8083991
  31. Regulation of Sindbis virus RNA replication: uncleaved P123 and nsP4 function in minus-strand RNA synthesis, whereas cleaved products from P123 are required for efficient plus-strand RNA synthesis.
    J Virol. 1994 Mar;68(3):1874-85 PMID: 8107248
  32. Poliovirus RNA synthesis utilizes an RNP complex formed around the 5'-end of viral RNA.
    EMBO J. 1993 Sep;12(9):3587-98 PMID: 8253083
  33. Expression of virus-encoded proteinases: functional and structural similarities with cellular enzymes.
    Microbiol Rev. 1993 Dec;57(4):781-822 PMID: 8302216
  34. A cellular cofactor facilitates efficient 3CD cleavage of the poliovirus P1 precursor.
    J Virol. 1993 Apr;67(4):2336-43 PMID: 8383245
  35. Genetic variation of the poliovirus genome with two VPg coding units.
    EMBO J. 1996 Jan 2;15(1):23-33 PMID: 8598203
  36. The arterivirus nsp4 protease is the prototype of a novel group of chymotrypsin-like enzymes, the 3C-like serine proteases.
    J Biol Chem. 1996 Mar 1;271(9):4864-71 PMID: 8617757
  37. Characterization in vitro of an autocatalytic processing activity associated with the predicted 3C-like proteinase domain of the coronavirus avian infectious bronchitis virus.
    J Virol. 1996 Mar;70(3):1923-30 PMID: 8627718
  38. Processing of the equine arteritis virus replicase ORF1b protein: identification of cleavage products containing the putative viral polymerase and helicase domains.
    J Virol. 1996 Oct;70(10):6625-33 PMID: 8794297
  39. An infectious arterivirus cDNA clone: identification of a replicase point mutation that abolishes discontinuous mRNA transcription.
    Proc Natl Acad Sci U S A. 1997 Feb 4;94(3):991-6 PMID: 9023370
  40. Proteolytic processing of the coronavirus infectious bronchitis virus 1a polyprotein: identification of a 10-kilodalton polypeptide and determination of its cleavage sites.
    J Virol. 1997 Mar;71(3):1814-20 PMID: 9032311
  41. Virus-encoded RNA helicases.
    J Virol. 1997 Apr;71(4):2583-90 PMID: 9060609
  42. Virus-encoded proteinases of the picornavirus super-group.
    J Gen Virol. 1997 Apr;78 ( Pt 4):699-723 PMID: 9129643
  43. Identification of an ATPase activity associated with a 71-kilodalton polypeptide encoded in gene 1 of the human coronavirus 229E.
    J Virol. 1997 Jul;71(7):5631-4 PMID: 9188639
  44. Sequence of the 3' end of the simian hemorrhagic fever virus genome.
    Gene. 1997 Jun 3;191(2):205-10 PMID: 9218721
  45. The molecular biology of coronaviruses.
    Adv Virus Res. 1997;48:1-100 PMID: 9233431
  46. Poliovirus 2C region functions during encapsidation of viral RNA.
    J Virol. 1997 Nov;71(11):8759-65 PMID: 9343235
  47. Nidovirales: a new order comprising Coronaviridae and Arteriviridae.
    Arch Virol. 1997;142(3):629-33 PMID: 9349308
  48. Alternative proteolytic processing of the arterivirus replicase ORF1a polyprotein: evidence that NSP2 acts as a cofactor for the NSP4 serine protease.
    J Virol. 1997 Dec;71(12):9313-22 PMID: 9371590
  49. The molecular biology of arteriviruses.
    J Gen Virol. 1998 May;79 ( Pt 5):961-79 PMID: 9603311
  50. Proteolytic mapping of the coronavirus infectious bronchitis virus 1b polyprotein: evidence for the presence of four cleavage sites of the 3C-like proteinase and identification of two novel cleavage products.
    Virology. 1998 Jul 5;246(2):288-97 PMID: 9657947
  51. ORF1a-encoded replicase subunits are involved in the membrane association of the arterivirus replication complex.
    J Virol. 1998 Aug;72(8):6689-98 PMID: 9658116
  52. Processing of the human coronavirus 229E replicase polyproteins by the virus-encoded 3C-like proteinase: identification of proteolytic products and cleavage sites common to pp1a and pp1ab.
    J Virol. 1999 Jan;73(1):177-85 PMID: 9847320
Article Info
Journal
Journal of virology
Abbr.
J Virol
ISSN
0022-538X
Published
1999-03-00
Pages
2027-37
Language
English
Region
United States
NLM ID
0113724
PMCID
PMC104445
Subset
IM
Grants
NCI NIH HHS · N01-CO-5600 · United States
Analysis Services
Analysis Services

Contact

No. 2 Wenbo Road, Zhangqiu District, Jinan, Shandong

Qilu Normal University · Genelibs Bioinformatics Lab

750 Shunhua Rd, Jinan

2F, Bldg F, University Science Park

Tel: 0531-88819269

WeChat Official Account

Follow our WeChat subscription account for real-time updates and the latest in medical and biological research.


Business Email

E-mail: product@genelibs.com