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PMID: 9369014 Published · ppublish English Comparative Study Journal Article Research Support, U.S. Gov't, P.H.S.

Protein phi and psi dihedral restraints determined from multidimensional hypersurface correlations of backbone chemical shifts and their use in the determination of protein tertiary structures.

Journal of biomolecular NMR ·Vol. 10 ·No. 2 ·1997-09-00 ·Pages 129-42

Beger RD, Bolton PH

Abstract

The chemical shifts of the backbone atoms of proteins can be used to obtain restraints that can be incorporated into structure determination methods. Each chemical shift can be used to define a restraint and these restraints can be simultaneously used to define the local, secondary structure features. The global fold can be determined by a combined use of the chemical shift based restraints along with the long-range information present in the NOEs of partially deuterated proteins or the amide-amide NOEs but not from such limited NOE data sets alone. This approach has been demonstrated to be capable of determining the overall folding pattern of four proteins. This suggests that solution-state NMR methods can be extended to the structure determination of larger proteins by using the information present in the chemical shifts of the backbone atoms along with the data that can be obtained on a small number of labeled forms.

MeSH Terms
Amino Acids/chemistry Anti-Bacterial Agents/chemistry Carbon Isotopes Carrier Proteins/chemistry Contractile Proteins Databases, Factual Intercellular Signaling Peptides and Proteins Macrophage Migration-Inhibitory Factors/chemistry Microfilament Proteins/chemistry Models, Molecular Nitrogen Isotopes Nuclear Magnetic Resonance, Biomolecular/methods Peptides Profilins Protein Structure, Secondary Protein Structure, Tertiary
Chemicals
Amino Acids Anti-Bacterial Agents Carbon Isotopes Carrier Proteins Contractile Proteins Intercellular Signaling Peptides and Proteins Macrophage Migration-Inhibitory Factors Microfilament Proteins Nitrogen Isotopes Peptides Profilins villin kedarcidin peptide
Authors & Affiliations
2 authors, click to expand affiliations / ORCID
Beger R D
Department of Chemistry, Wesleyan University, Middletown, CT 06459, USA.
Bolton P H
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Article Info
Journal
Journal of biomolecular NMR
Abbr.
J Biomol NMR
ISSN
0925-2738
Published
1997-09-00
Pages
129-42
Language
English
Region
Netherlands
NLM ID
9110829
Subset
IM
Grants
NIGMS NIH HHS · GM-51298 · United States
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