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PMID: 8892948 Published · ppublish English Journal Article Research Support, Non-U.S. Gov't

ATPase, GTPase, and RNA binding activities associated with the 206-kilodalton protein of turnip yellow mosaic virus.

Journal of virology ·Vol. 70 ·No. 11 ·1996-11-00 ·Pages 8169-74

Kadaré G, David C, Haenni AL

Abstract

The 206-kDa protein of turnip yellow mosaic virus belongs to an expanding group of proteins containing a domain which includes the consensus nucleotide binding site GxxxxGKS/T. A portion of this protein (amino acids [aa] 916 to 1259) was expressed in Escherichia coli and purified by affinity chromatography to near homogeneity. In the absence of any other viral factors, it exhibited ATPase and GTPase activities in vitro. A mutant protein with a single amino acid substitution in the consensus nucleotide binding site (Lys-982 to Ser) exhibited only low levels of both activities, implying that Lys-982 is important for nucleoside triphosphatase activity. The protein also possessed nonspecific RNA binding capacity. Deletion mutants revealed that an N-terminal domain (aa 916 to 1061) and a C-terminal domain (aa 1182 to 1259) participate in RNA binding. The results presented here provide the first experimental evidence that turnip yellow mosaic virus encodes nucleoside triphosphatase and RNA binding activities.

MeSH Terms
Adenosine Triphosphatases/genetics,isolation & purification,metabolism Cloning, Molecular Conserved Sequence GTP Phosphohydrolases/genetics,isolation & purification,metabolism Gene Expression Lysine Mutagenesis, Site-Directed RNA-Binding Proteins/genetics,isolation & purification,metabolism Recombinant Fusion Proteins/genetics,isolation & purification,metabolism Serine Tymovirus/genetics,metabolism Viral Proteins/genetics,isolation & purification,metabolism
Chemicals
RNA-Binding Proteins Recombinant Fusion Proteins Viral Proteins Serine Adenosine Triphosphatases GTP Phosphohydrolases Lysine
Authors & Affiliations
3 authors, click to expand affiliations / ORCID
Kadaré G
Institut Jacques Monod, Paris, France.
David C
Haenni A L
References (41)
41 references, click to expand
  1. Distantly related sequences in the alpha- and beta-subunits of ATP synthase, myosin, kinases and other ATP-requiring enzymes and a common nucleotide binding fold.
    EMBO J. 1982;1(8):945-51 PMID: 6329717
  2. RNA-binding activity of hepatitis delta antigen involves two arginine-rich motifs and is required for hepatitis delta virus RNA replication.
    J Virol. 1993 Apr;67(4):2221-7 PMID: 8445729
  3. The nucleotide binding site detected by affinity labeling in the large T proteins of polyoma and SV40 viruses is distinct from their ATPase catalytic site.
    J Biol Chem. 1984 Dec 25;259(24):15196-203 PMID: 6096361
  4. Overlapping open reading frames revealed by complete nucleotide sequencing of turnip yellow mosaic virus genomic RNA.
    Nucleic Acids Res. 1988 Jul 11;16(13):6157-73 PMID: 3399388
  5. Mutation of lysine-48 to arginine in the yeast RAD3 protein abolishes its ATPase and DNA helicase activities but not the ability to bind ATP.
    EMBO J. 1988 Oct;7(10):3263-9 PMID: 2846277
  6. RNA helicase activity associated with the human p68 protein.
    Nature. 1989 Jun 15;339(6225):562-4 PMID: 2471939
  7. Two related superfamilies of putative helicases involved in replication, recombination, repair and expression of DNA and RNA genomes.
    Nucleic Acids Res. 1989 Jun 26;17(12):4713-30 PMID: 2546125
  8. Viral proteins containing the purine NTP-binding sequence pattern.
    Nucleic Acids Res. 1989 Nov 11;17(21):8413-40 PMID: 2555771
  9. Poliovirus protein 2C has ATPase and GTPase activities.
    J Biol Chem. 1993 Apr 15;268(11):8105-10 PMID: 8385138
  10. Cis-preferential replication of the turnip yellow mosaic virus RNA genome.
    Proc Natl Acad Sci U S A. 1993 Jul 1;90(13):6095-9 PMID: 8327488
  11. Hepatitis C virus NS3 protein polynucleotide-stimulated nucleoside triphosphatase and comparison with the related pestivirus and flavivirus enzymes.
    J Virol. 1993 Oct;67(10):6152-8 PMID: 8396675
  12. Identification of the essential cysteine and histidine residues of the turnip yellow mosaic virus protease.
    Virology. 1994 Jan;198(1):148-54 PMID: 8037790
  13. In vitro transcripts of turnip yellow mosaic virus encompassing a long 3' extension or produced from a full-length cDNA clone harbouring a 2 kb-long PCR-amplified segment are infectious.
    Res Virol. 1993 Sep-Oct;144(5):339-48 PMID: 8284512
  14. Mutations in the NTP-binding motif of minute virus of mice (MVM) NS-1 protein uncouple ATPase and DNA helicase functions.
    J Biol Chem. 1994 Feb 4;269(5):3283-9 PMID: 8106366
  15. Biochemical studies on poliovirus polypeptide 2C: evidence for ATPase activity.
    Virology. 1994 Feb 15;199(1):176-87 PMID: 8116241
  16. ATPase and GTPase activities associated with Semliki Forest virus nonstructural protein nsP2.
    J Virol. 1994 Sep;68(9):5804-10 PMID: 8057461
  17. Purification, properties, and subcellular localization of foxtail mosaic potexvirus 26-kDa protein.
    Virology. 1994 Oct;204(1):254-65 PMID: 7522371
  18. Characterization of NTPase, RNA-binding and RNA-helicase activities of the cytoplasmic inclusion protein of tamarillo mosaic potyvirus.
    Eur J Biochem. 1994 Sep 1;224(2):677-84 PMID: 7925384
  19. The NTP-binding motif in cowpea mosaic virus B polyprotein is essential for viral replication.
    J Gen Virol. 1994 Nov;75 ( Pt 11):3167-76 PMID: 7964626
  20. Molecular dissection of influenza virus nucleoprotein: deletion mapping of the RNA binding domain.
    J Virol. 1994 Dec;68(12):8433-6 PMID: 7966640
  21. Pestivirus NS3 (p80) protein possesses RNA helicase activity.
    J Virol. 1995 Mar;69(3):1720-6 PMID: 7853509
  22. Papain-like proteinase of turnip yellow mosaic virus: a prototype of a new viral proteinase group.
    Arch Virol. 1995;140(2):273-88 PMID: 7710355
  23. Poliovirus protein 2C contains two regions involved in RNA binding activity.
    J Biol Chem. 1995 Apr 28;270(17):10105-12 PMID: 7730315
  24. Identification of an RNA binding region within the N-terminal third of the influenza A virus nucleoprotein.
    J Virol. 1995 Jun;69(6):3799-806 PMID: 7745727
  25. RNA helicase activity of the plum pox potyvirus CI protein expressed in Escherichia coli. Mapping of an RNA binding domain.
    Nucleic Acids Res. 1995 Apr 25;23(8):1327-32 PMID: 7538661
  26. Rep protein of tomato yellow leaf curl geminivirus has an ATPase activity required for viral DNA replication.
    Proc Natl Acad Sci U S A. 1995 Jun 6;92(12):5640-4 PMID: 7777563
  27. C-terminal domain of the hepatitis C virus NS3 protein contains an RNA helicase activity.
    Biochem Biophys Res Commun. 1995 Oct 4;215(1):160-6 PMID: 7575585
  28. Expression, isolation, and characterization of the hepatitis C virus ATPase/RNA helicase.
    Arch Biochem Biophys. 1995 Oct 20;323(1):47-53 PMID: 7487072
  29. Expression of the turnip yellow mosaic virus proteinase in Escherichia coli and determination of the cleavage site within the 206 kDa protein.
    J Gen Virol. 1995 Nov;76 ( Pt 11):2853-7 PMID: 7595394
  30. Identification of an RNA-stimulated NTPase in the predicted helicase sequence of the Rubella virus nonstructural polyprotein.
    Virology. 1996 Mar 1;217(1):367-72 PMID: 8599224
  31. Refined crystal structure of the triphosphate conformation of H-ras p21 at 1.35 A resolution: implications for the mechanism of GTP hydrolysis.
    EMBO J. 1990 Aug;9(8):2351-9 PMID: 2196171
  32. The 54-kD protein of signal recognition particle contains a methionine-rich RNA binding domain.
    J Cell Biol. 1990 Nov;111(5 Pt 1):1793-802 PMID: 1699948
  33. Novel catalytic activity associated with positive-strand RNA virus infection: nucleic acid-stimulated ATPase activity of the plum pox potyvirus helicaselike protein.
    J Virol. 1991 Jan;65(1):1-6 PMID: 1845877
  34. RNA helicase: a novel activity associated with a protein encoded by a positive strand RNA virus.
    Nucleic Acids Res. 1990 Dec 11;18(23):7003-6 PMID: 2263459
  35. The P-loop--a common motif in ATP- and GTP-binding proteins.
    Trends Biochem Sci. 1990 Nov;15(11):430-4 PMID: 2126155
  36. A new RNA helicase isolated from HeLa cells that catalytically translocates in the 3' to 5' direction.
    J Biol Chem. 1992 Mar 5;267(7):4398-407 PMID: 1537828
  37. Conservation of the putative methyltransferase domain: a hallmark of the 'Sindbis-like' supergroup of positive-strand RNA viruses.
    J Gen Virol. 1992 Aug;73 ( Pt 8):2129-34 PMID: 1645151
  38. Visualization and characterization of tobacco mosaic virus movement protein binding to single-stranded nucleic acids.
    Plant Cell. 1992 Apr;4(4):397-411 PMID: 1379865
  39. RNA-stimulated NTPase activity associated with yellow fever virus NS3 protein expressed in bacteria.
    J Virol. 1993 Feb;67(2):989-96 PMID: 8380474
  40. RNA-stimulated NTPase activity associated with the p80 protein of the pestivirus bovine viral diarrhea virus.
    Virology. 1993 Mar;193(1):1-10 PMID: 8382392
  41. Primary structural comparison of RNA-dependent polymerases from plant, animal and bacterial viruses.
    Nucleic Acids Res. 1984 Sep 25;12(18):7269-82 PMID: 6207485
Article Info
Journal
Journal of virology
Abbr.
J Virol
ISSN
0022-538X
Published
1996-11-00
Pages
8169-74
Language
English
Region
United States
NLM ID
0113724
PMCID
PMC190897
Subset
IM
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