Home LiteratureArticle Details
PMID: 8723390 Published · ppublish English Journal Article Research Support, Non-U.S. Gov't Research Support, U.S. Gov't, P.H.S.

The expression of a small fraction of cellular genes is changed in response to histone hyperacetylation.

Gene expression ·Vol. 5 ·No. 4-5 ·1996-00-00 ·Pages 245-53

Van Lint C, Emiliani S, Verdin E

Abstract

Posttranslational modifications of histones in chromatin are emerging as an important mechanism in the regulation of gene expression. Changes in histone acetylation levels occur during many nuclear processes such as replication, transcriptional silencing, and activation. Histone acetylation levels represent the result of a dynamic equilibrium between competing histone deacetylase(s) and histone acetylase(s). We have used two new specific inhibitors of histone deacetylase, trichostatin A (TSA) and trapoxin (TPX), to probe the effect of histone hyperacetylation on gene expression. We confirm that both drugs block histone deacetylase activity and have no detectable effects on histone acetylation rates in human lymphoid cell lines. Treatment with either TSA or TPX results in the transcriptional activation of HIV-1 gene expression in latently infected cell lines. In contrast, TSA and TPX cause a rapid decrease in c-myc gene expression and no change in the expression of the gene for glyceraldehyde-3-phosphate dehydrogenase (GAPDH). Using differential display to compare the differences in gene expression between untreated cells and cells treated with TSA, we found that the expression of approximately 2% of cellular genes (8 genes out of approximately 340 examined) changes in response to TSA treatment. These results demonstrate that the transcriptional regulation of a restricted set of cellular genes is uniquely sensitive to the degree of histone acetylation in chromatin.

MeSH Terms
Acetylation Anti-Bacterial Agents/pharmacology Cell Line Chromatin/chemistry,genetics,metabolism Enzyme Inhibitors/pharmacology Gene Expression Regulation/drug effects Genes, Viral/drug effects Genes, myc/drug effects HIV-1/genetics Histone Deacetylase Inhibitors Histone Deacetylases/metabolism Histones/chemistry,metabolism Humans Hydroxamic Acids/pharmacology Peptides Protein Processing, Post-Translational
Chemicals
Anti-Bacterial Agents Chromatin Enzyme Inhibitors Histone Deacetylase Inhibitors Histones Hydroxamic Acids Peptides trapoxin A trichostatin A Histone Deacetylases
Authors & Affiliations
3 authors, click to expand affiliations / ORCID
Van Lint C
Laboratory of Molecular Virology, Picower Institute for Medical Research, Manhasset, NY 11030, USA.
Emiliani S
Verdin E
References (44)
44 references, click to expand
  1. Histone acetylation: facts and questions.
    Chromosoma. 1994 Dec;103(7):441-9 PMID: 7720410
  2. Chromatin disruption in the promoter of human immunodeficiency virus type 1 during transcriptional activation.
    EMBO J. 1993 Aug;12(8):3249-59 PMID: 8344262
  3. Remodeling sperm chromatin in Xenopus laevis egg extracts: the role of core histone phosphorylation and linker histone B4 in chromatin assembly.
    J Cell Biol. 1994 Aug;126(3):591-601 PMID: 8045925
  4. Histone H4 acetylation distinguishes coding regions of the human genome from heterochromatin in a differentiation-dependent but transcription-independent manner.
    EMBO J. 1995 Aug 15;14(16):3946-57 PMID: 7664735
  5. Stable nucleosome positioning and complete repression by the yeast alpha 2 repressor are disrupted by amino-terminal mutations in histone H4.
    Genes Dev. 1992 Mar;6(3):411-25 PMID: 1547940
  6. Multiple functions of dynamic histone acetylation.
    J Cell Biochem. 1994 May;55(1):98-105 PMID: 8083305
  7. Gene expression within a chromatin domain: the role of core histone hyperacetylation.
    Biochemistry. 1994 Apr 12;33(14):4197-206 PMID: 8155635
  8. Genetic evidence for an interaction between SIR3 and histone H4 in the repression of the silent mating loci in Saccharomyces cerevisiae.
    Proc Natl Acad Sci U S A. 1990 Aug;87(16):6286-90 PMID: 2201024
  9. Trapoxin, an antitumor cyclic tetrapeptide, is an irreversible inhibitor of mammalian histone deacetylase.
    J Biol Chem. 1993 Oct 25;268(30):22429-35 PMID: 8226751
  10. Sensitivity of nuclear c-myc levels and induction to differentiation-inducing agents in human colon tumor cell lines.
    Cancer Lett. 1992 Feb 29;62(2):95-105 PMID: 1540946
  11. Reversible effects of sodium butyrate on the differentiation of F9 embryonal carcinoma cells.
    Exp Cell Res. 1991 Jan;192(1):46-51 PMID: 1898593
  12. Regulation of c-myc expression by sodium butyrate in the colon carcinoma cell line Caco-2.
    FEBS Lett. 1993 Jul 12;326(1-3):45-50 PMID: 8325387
  13. Effects of sodium butyrate, a new pharmacological agent, on cells in culture.
    Mol Cell Biochem. 1982 Feb 5;42(2):65-82 PMID: 6174854
  14. Potent and specific inhibition of mammalian histone deacetylase both in vivo and in vitro by trichostatin A.
    J Biol Chem. 1990 Oct 5;265(28):17174-9 PMID: 2211619
  15. HIV-1 Tat overcomes inefficient transcriptional elongation in vitro.
    J Mol Biol. 1993 Aug 5;232(3):732-46 PMID: 7689112
  16. Core histone hyperacetylation co-maps with generalized DNase I sensitivity in the chicken beta-globin chromosomal domain.
    EMBO J. 1994 Apr 15;13(8):1823-30 PMID: 8168481
  17. Induction of dormant HIV-1 by sodium butyrate: involvement of the TATA box in the activation of the HIV-1 promoter.
    AIDS. 1991 Jun;5(6):663-8 PMID: 1883541
  18. Transcriptional activation and chromatin remodeling of the HIV-1 promoter in response to histone acetylation.
    EMBO J. 1996 Mar 1;15(5):1112-20 PMID: 8605881
  19. Activation of the mouse cytokeratin A (endo A) gene in teratocarcinoma F9 cells by the histone deacetylase inhibitor Trichostatin A.
    FEBS Lett. 1994 Oct 17;353(2):225-9 PMID: 7523197
  20. A positive role for histone acetylation in transcription factor access to nucleosomal DNA.
    Cell. 1993 Jan 15;72(1):73-84 PMID: 8422685
  21. Mutational analysis of sodium butyrate inducible elements in the human immunodeficiency virus type I long terminal repeat.
    Virology. 1989 Oct;172(2):573-83 PMID: 2800338
  22. Sodium butyrate treatment of cells latently infected with HIV-1 results in the expression of unspliced viral RNA.
    Virology. 1993 Oct;196(2):496-505 PMID: 8372431
  23. Evidence for a labile intermediate in the butyrate induced reduction of the level of c-myc RNA in SW837 rectal carcinoma cells.
    Oncogene. 1988 Oct;3(4):423-8 PMID: 3078950
  24. Differential display of eukaryotic messenger RNA by means of the polymerase chain reaction.
    Science. 1992 Aug 14;257(5072):967-71 PMID: 1354393
  25. Effects of sodium butyrate on the rearranged c-myc expression in mouse plasmacytoma cells.
    Exp Cell Res. 1991 Sep;196(1):146-9 PMID: 1879469
  26. Decoding the nucleosome.
    Cell. 1993 Oct 8;75(1):5-8 PMID: 8402900
  27. DNase I-hypersensitive sites are associated with both long terminal repeats and with the intragenic enhancer of integrated human immunodeficiency virus type 1.
    J Virol. 1991 Dec;65(12):6790-9 PMID: 1942252
  28. Induction of developmentally programmed cell death and activation of HIV by sodium butyrate.
    Virology. 1994 Jul;202(1):513-8 PMID: 8009866
  29. Stimulation of tissue-type plasminogen activator gene expression by sodium butyrate and trichostatin A in human endothelial cells involves histone acetylation.
    Biochem J. 1995 Aug 15;310 ( Pt 1):171-6 PMID: 7646441
  30. Rapid alteration of c-myc and c-jun expression in leukemic cells induced to differentiate by a butyric acid prodrug.
    FEBS Lett. 1993 Aug 16;328(3):225-9 PMID: 8348968
  31. RNA abundance measured by a lysate RNase protection assay.
    Biotechniques. 1992 May;12(5):736-41 PMID: 1381196
  32. Butyrate rapidly induces growth inhibition and differentiation in HT-29 cells.
    Cell Growth Differ. 1993 Jun;4(6):495-501 PMID: 8373733
  33. Truncation does not abrogate transcriptional downregulation of the c-myc gene by sodium butyrate in Burkitt's lymphoma cells.
    EMBO J. 1987 Oct;6(10):2959-64 PMID: 3691477
  34. Regulated expression of human immunodeficiency virus type 1 in human glial cells: induction of dormant virus.
    Pathobiology. 1992;60(4):195-205 PMID: 1388716
  35. Trichostatin A induces morphological changes and gelsolin expression by inhibiting histone deacetylase in human carcinoma cell lines.
    Exp Cell Res. 1994 Sep;214(1):189-97 PMID: 8082721
  36. Regulatory elements in the immunoglobulin kappa locus induce c-myc activation and the promoter shift in Burkitt's lymphoma cells.
    EMBO J. 1993 Oct;12(10):3913-20 PMID: 8404859
  37. Relationship between core histone acetylation and histone H1(0) gene activity.
    Eur J Biochem. 1994 Sep 15;224(3):885-92 PMID: 7925412
  38. Trichostatin A and trapoxin: novel chemical probes for the role of histone acetylation in chromatin structure and function.
    Bioessays. 1995 May;17(5):423-30 PMID: 7786288
  39. Mitogen-stimulated phosphorylation of histone H3 is targeted to a small hyperacetylation-sensitive fraction.
    Proc Natl Acad Sci U S A. 1994 May 24;91(11):4781-5 PMID: 8197135
  40. c-myc antisense oligonucleotides inhibit the colony-forming capacity of Colo 320 colonic carcinoma cells.
    J Clin Invest. 1992 May;89(5):1523-7 PMID: 1569190
  41. Histone acetylation influences both gene expression and development of Xenopus laevis.
    Dev Biol. 1994 Oct;165(2):654-69 PMID: 7958429
  42. [Molecular and cellular action of butyrate].
    C R Seances Soc Biol Fil. 1992;186(1-2):12-25 PMID: 1450986
  43. Sodium butyrate causes an increase in the block to transcriptional elongation in the c-myc gene in SW837 rectal carcinoma cells.
    J Biol Chem. 1993 Sep 25;268(27):20466-72 PMID: 8376401
  44. Distribution and cloning of eukaryotic mRNAs by means of differential display: refinements and optimization.
    Nucleic Acids Res. 1993 Jul 11;21(14):3269-75 PMID: 8341601
Article Info
Journal
Gene expression
Abbr.
Gene Expr
ISSN
1052-2166
Published
1996-00-00
Pages
245-53
Language
English
Region
United States
NLM ID
9200651
PMCID
PMC6138027
Subset
IM
Grants
NIGMS NIH HHS · R01 GM051671 · United States
NIGMS NIH HHS · GM51671-01A1 · United States
Analysis Services
Analysis Services

Contact

No. 2 Wenbo Road, Zhangqiu District, Jinan, Shandong

Qilu Normal University · Genelibs Bioinformatics Lab

750 Shunhua Rd, Jinan

2F, Bldg F, University Science Park

Tel: 0531-88819269

WeChat Official Account

Follow our WeChat subscription account for real-time updates and the latest in medical and biological research.


Business Email

E-mail: product@genelibs.com