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PMID: 8588741 Published · ppublish English Journal Article Research Support, U.S. Gov't, Non-P.H.S. Research Support, U.S. Gov't, P.H.S.

Expression of the cbbLcbbS and cbbM genes and distinct organization of the cbb Calvin cycle structural genes of Rhodobacter capsulatus.

Archives of microbiology ·Vol. 164 ·No. 6 ·1995-12-00 ·Pages 396-405

Paoli GC, Morgan NS, Tabita FR, Shively JM

Abstract

Rhodobacter capsulatus fixes CO2 via the Calvin reductive pentose phosphate pathway and, like some other nonsulfur purple bacteria, is known to synthesize two distinct structural forms of ribulose 1,5-bisphosphate carboxylase/oxygenase (RubisCO). Cosmid clones that hybridized to form I (cbbLcbbS) and form II (cbbM) RubisCO gene probes were isolated from a genomic library of R. capsulatus strain SB1003. Southern blotting and hybridization analysis with gene-specific probes derived from Rhodobacter sphaeroides revealed that R. capsulatus cbbM is clustered with genes encoding other enzymes of the Calvin cycle, including fructose 1,6/sedoheptulose 1,7-bisphosphatase (cbbF), phosphoribulokinase (cbbP), transketolase (cbbT), glyceraldehyde-3-phosphate dehydrogenase (cbbG), and fructose 1,6-bisphosphate aldolase (cbbA), as well as a gene (cbbR) encoding a divergently transcribed LysR-type regulatory protein. Surprisingly, a cosmid clone containing the R. capsulatus form I RubisCO genes (cbbL and cbbS) failed to hybridize to the other cbb structural gene probes, unlike the situation with the closely related organism R. sphaeroides. The form I and form II RubisCO genes were cloned into pUC-derived vectors and were expressed in Escherichia coli to yield active recombinant enzyme in each case. Complementation of a RubisCO-deletion strain of R. sphaeroides to photosynthetic growth by R. capsulatus cbbLcbbS or cbbM was achieved using the broad host-range vector, pRK415, and R. sphaeroides expression vector pRPS-1.

MeSH Terms
Chromosome Mapping Cloning, Molecular Cosmids Escherichia coli/genetics Gene Expression Genes, Bacterial Genetic Complementation Test Multigene Family Pentose Phosphate Pathway/genetics Rhodobacter capsulatus/genetics,metabolism Ribulose-Bisphosphate Carboxylase/genetics
Chemicals
Ribulose-Bisphosphate Carboxylase
Authors & Affiliations
4 authors, click to expand affiliations / ORCID
Paoli G C
Department of Microbiology, The Ohio State University, Columbus, OH 43210, USA.
Morgan N S
Tabita F R
Shively J M
References (44)
44 references, click to expand
  1. Conserved motifs in a divergent nod box of Azorhizobium caulinodans ORS571 reveal a common structure in promoters regulated by LysR-type proteins.
    Proc Natl Acad Sci U S A. 1992 Mar 1;89(5):1646-50 PMID: 1542656
  2. Cleavage of structural proteins during the assembly of the head of bacteriophage T4.
    Nature. 1970 Aug 15;227(5259):680-5 PMID: 5432063
  3. Pyridine nucleotide control and subunit structure of phosphoribulokinase from photosynthetic bacteria.
    J Bacteriol. 1980 Sep;143(3):1275-80 PMID: 6251028
  4. A rapid, sensitive method for detection of alkaline phosphatase-conjugated anti-antibody on Western blots.
    Anal Biochem. 1984 Jan;136(1):175-9 PMID: 6424501
  5. CbbR, a LysR-type transcriptional activator, is required for expression of the autotrophic CO2 fixation enzymes of Xanthobacter flavus.
    J Bacteriol. 1993 Oct;175(19):6097-104 PMID: 8407781
  6. Sulfide utilization by purple nonsulfur bacteria.
    Arch Mikrobiol. 1972;86(1):49-56 PMID: 4628180
  7. Growth of the photosynthetic bacterium Rhodopseudomonas capsulata chemoautotrophically in darkness with H2 as the energy source.
    J Bacteriol. 1979 Jan;137(1):524-30 PMID: 216663
  8. Identification, expression, and deduced primary structure of transketolase and other enzymes encoded within the form II CO2 fixation operon of Rhodobacter sphaeroides.
    J Biol Chem. 1991 Oct 25;266(30):20447-52 PMID: 1939098
  9. Organization of phosphoribulokinase and ribulose bisphosphate carboxylase/oxygenase genes in Rhodopseudomonas (Rhodobacter) sphaeroides.
    J Bacteriol. 1987 Aug;169(8):3685-90 PMID: 3038848
  10. Characterization of Rhodopseudomonas capsulata.
    Arch Microbiol. 1975 Nov 7;105(3):207-16 PMID: 1103769
  11. Isolation of the Rhodopseudomonas sphaeroides form I ribulose 1,5-bisphosphate carboxylase/oxygenase large and small subunit genes and expression of the active hexadecameric enzyme in Escherichia coli.
    Gene. 1986;44(2-3):271-8 PMID: 3023189
  12. Depression of the synthesis of the intermediate and large forms of ribulose-1,5-bisphosphate carboxylase/oxygenase in Rhodopseudomonas capsulata.
    Arch Microbiol. 1984 Jul;138(3):233-6 PMID: 6089690
  13. Nucleotide sequence and functional analysis of cbbR, a positive regulator of the Calvin cycle operons of Rhodobacter sphaeroides.
    J Bacteriol. 1993 Sep;175(18):5778-84 PMID: 8376325
  14. Expression of endogenous and foreign ribulose 1,5-bisphosphate carboxylase-oxygenase (RubisCO) genes in a RubisCO deletion mutant of Rhodobacter sphaeroides.
    J Bacteriol. 1991 Mar;173(6):2099-108 PMID: 1900508
  15. Reductive pentose phosphate-independent CO2 fixation in Rhodobacter sphaeroides and evidence that ribulose bisphosphate carboxylase/oxygenase activity serves to maintain the redox balance of the cell.
    J Bacteriol. 1993 Jun;175(11):3372-9 PMID: 8501041
  16. Light-dependent utilization of organic compounds and photoproduction of molecular hydrogen by photosynthetic bacteria; relationships with nitrogen metabolism.
    Arch Biochem Biophys. 1961 Sep;94:449-63 PMID: 13731247
  17. A complementation analysis of the restriction and modification of DNA in Escherichia coli.
    J Mol Biol. 1969 May 14;41(3):459-72 PMID: 4896022
  18. Isolation and partial characterization of Rhodopseudomonas sphaeroides mutants defective in the regulation of ribulose bisphosphate carboxylase/oxygenase.
    J Bacteriol. 1983 Nov;156(2):507-15 PMID: 6313604
  19. Complementation analysis and regulation of CO2 fixation gene expression in a ribulose 1,5-bisphosphate carboxylase-oxygenase deletion strain of Rhodospirillum rubrum.
    J Bacteriol. 1993 Aug;175(16):5066-77 PMID: 8349547
  20. Electrophoretic transfer of proteins from polyacrylamide gels to nitrocellulose sheets: procedure and some applications.
    Proc Natl Acad Sci U S A. 1979 Sep;76(9):4350-4 PMID: 388439
  21. A technique for radiolabeling DNA restriction endonuclease fragments to high specific activity.
    Anal Biochem. 1983 Jul 1;132(1):6-13 PMID: 6312838
  22. Identification of cfxR, an activator gene of autotrophic CO2 fixation in Alcaligenes eutrophus.
    Mol Microbiol. 1991 Nov;5(11):2695-705 PMID: 1779759
  23. Activation of extra copies of genes coding for nitrogenase in Rhodopseudomonas capsulata.
    Nature. 1984 Jan 19-25;307(5948):289-92 PMID: 6582352
  24. The gene for the small subunit of ribulose-1,5-bisphosphate carboxylase/oxygenase is located close to the gene for the large subunit in the cyanobacterium Anacystis nidulans 6301.
    Nucleic Acids Res. 1983 Oct 25;11(20):6957-64 PMID: 6415615
  25. Refinement of the high-resolution physical and genetic map of Rhodobacter capsulatus and genome surveys using blots of the cosmid encyclopedia.
    EMBO J. 1995 Apr 18;14(8):1827-41 PMID: 7737133
  26. Improved broad-host-range plasmids for DNA cloning in gram-negative bacteria.
    Gene. 1988 Oct 15;70(1):191-7 PMID: 2853689
  27. Hybrid pUC vectors for addition of new restriction enzyme sites to the ends of DNA fragments.
    Nucleic Acids Res. 1987 Mar 25;15(6):2778 PMID: 3031611
  28. The form II fructose 1,6-bisphosphatase and phosphoribulokinase genes form part of a large operon in Rhodobacter sphaeroides: primary structure and insertional mutagenesis analysis.
    Biochemistry. 1990 Sep 4;29(35):8085-93 PMID: 2175647
  29. Physical and genetic mapping of the Rhodobacter sphaeroides 2.4.1 genome: presence of two unique circular chromosomes.
    J Bacteriol. 1989 Nov;171(11):5850-9 PMID: 2808300
  30. Replication of an origin-containing derivative of plasmid RK2 dependent on a plasmid function provided in trans.
    Proc Natl Acad Sci U S A. 1979 Apr;76(4):1648-52 PMID: 377280
  31. Cloning and characterization of the gene product of the form II ribulose-1,5-bisphosphate carboxylase gene of Rhodopseudomonas sphaeroides.
    J Bacteriol. 1985 Jan;161(1):469-72 PMID: 3881398
  32. Localization and mapping of CO2 fixation genes within two gene clusters in Rhodobacter sphaeroides.
    J Bacteriol. 1988 May;170(5):2153-8 PMID: 2834328
  33. rbcR [correction of rcbR], a gene coding for a member of the LysR family of transcriptional regulators, is located upstream of the expressed set of ribulose 1,5-bisphosphate carboxylase/oxygenase genes in the photosynthetic bacterium Chromatium vinosum.
    J Bacteriol. 1991 Aug;173(16):5224-9 PMID: 1907267
  34. New and versatile cloning vectors with kanamycin-resistance marker.
    Gene. 1987;56(2-3):309-12 PMID: 3315864
  35. Cloning and expression in Escherichia coli of the form II ribulose 1,5-bisphosphate carboxylase/oxygenase gene from Rhodopseudomonas sphaeroides.
    Gene. 1984 Nov;31(1-3):91-101 PMID: 6396166
  36. Nucleotide sequence, transcriptional analysis, and expression of genes encoded within the form I CO2 fixation operon of Rhodobacter sphaeroides.
    J Biol Chem. 1991 Aug 5;266(22):14646-53 PMID: 1907281
  37. Improved M13 phage cloning vectors and host strains: nucleotide sequences of the M13mp18 and pUC19 vectors.
    Gene. 1985;33(1):103-19 PMID: 2985470
  38. Specific binding of Thiobacillus ferrooxidans RbcR to the intergenic sequence between the rbc operon and the rbcR gene.
    J Bacteriol. 1993 Feb;175(4):1019-25 PMID: 8432695
  39. Independent regulation of synthesis of form I and form II ribulose bisphosphate carboxylase-oxygenase in Rhodopseudomonas sphaeroides.
    J Bacteriol. 1986 Feb;165(2):620-4 PMID: 3080410
  40. Cloning and expression of the D-ribulose-1,5-bisphosphate carboxylase/oxygenase form II gene from Thiobacillus intermedius in Escherichia coli.
    FEMS Microbiol Lett. 1993 Mar 1;107(2-3):287-92 PMID: 8472910
  41. Identification and organization of carbon dioxide fixation genes in Xanthobacter flavus H4-14.
    Mol Gen Genet. 1991 Feb;225(2):320-30 PMID: 1900916
  42. Map of genes for carotenoid and bacteriochlorophyll biosynthesis in Rhodopseudomonas capsulata.
    J Bacteriol. 1976 May;126(2):619-29 PMID: 1262313
  43. Isolation and preliminary characterization of two forms of ribulose 1,5-bisphosphate carboxylase from Rhodopseudomonas capsulata.
    J Bacteriol. 1977 Dec;132(3):818-23 PMID: 21872
  44. Molecular and cellular regulation of autotrophic carbon dioxide fixation in microorganisms.
    Microbiol Rev. 1988 Jun;52(2):155-89 PMID: 3137427
Article Info
Journal
Archives of microbiology
Abbr.
Arch Microbiol
ISSN
0302-8933
Published
1995-12-00
Pages
396-405
Language
English
Region
Germany
NLM ID
0410427
Subset
IM
Grants
NIGMS NIH HHS · GM-45404 · United States
Analysis Services
Analysis Services

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