Home LiteratureArticle Details
PMID: 8516295 Published · ppublish English Comparative Study Journal Article Research Support, Non-U.S. Gov't

Interactions between three common subunits of yeast RNA polymerases I and III.

Lalo D, Carles C, Sentenac A, Thuriaux P

Abstract

The AC40 and AC19 subunits (encoded by RPC40 and RPC19) are shared by yeast RNA polymerases I and III and have a local sequence similarity to prokaryotic alpha subunits. Mutational analysis of the corresponding "alpha motif" indicated that its integrity is essential on AC40 subunit but is not essential on AC19 subunit. By applying the two-hybrid method, these two polypeptides were shown to associate in vivo. Extragenic suppression of rpc19 and rpc40 mutations confirmed that AC19 and AC40 subunits interact with each other in vivo and revealed an interaction with ABC10 beta subunit [encoded by RPB10; Woychick, N. A. & Young, R.A. (1990) J. Biol. Chem. 265, 17816-17819], one of the five polypeptides common to all three nuclear RNA polymerases. A correction of the RPB10 sequence showed that ABC10 beta subunit is a 70-amino acid polypeptide, as confirmed by peptide microsequencing. These results suggest that the assembly of RNA polymerase I and III requires the association of ABC10 beta subunit with an AC19/AC40 heterodimer.

Related Genes
MeSH Terms
Amino Acid Sequence Animals Base Sequence Genes, Fungal Genetic Markers Genotype Humans Macromolecular Substances Molecular Sequence Data Mutagenesis, Site-Directed Plasmids RNA Polymerase I/genetics,metabolism RNA Polymerase III/genetics,metabolism Restriction Mapping Saccharomyces cerevisiae/enzymology,genetics Sequence Homology, Amino Acid
Chemicals
Genetic Markers Macromolecular Substances RNA Polymerase I RNA Polymerase III
Authors & Affiliations
4 authors, click to expand affiliations / ORCID
Lalo D
Département de Biologie Cellulaire et Moléculaire, Centre d'Etudes de Saclay, Gif sur Yvette, France.
Carles C
Sentenac A
Thuriaux P
References (48)
48 references, click to expand
  1. A conjugation-specific gene (cnjC) from Tetrahymena encodes a protein homologous to yeast RNA polymerase subunits (RPB3, RPC40) and similar to a portion of the prokaryotic RNA polymerase alpha subunit (rpoA).
    Nucleic Acids Res. 1990 May 25;18(10):2953-60 PMID: 2112240
  2. A unique structure at the carboxyl terminus of the largest subunit of eukaryotic RNA polymerase II.
    Proc Natl Acad Sci U S A. 1985 Dec;82(23):7934-8 PMID: 2999785
  3. The RPC31 gene of Saccharomyces cerevisiae encodes a subunit of RNA polymerase C (III) with an acidic tail.
    Mol Cell Biol. 1990 Sep;10(9):4737-43 PMID: 2201900
  4. An essential and specific subunit of RNA polymerase III (C) is encoded by gene RPC34 in Saccharomyces cerevisiae.
    J Biol Chem. 1992 Oct 25;267(30):21390-5 PMID: 1400451
  5. A novel genetic system to detect protein-protein interactions.
    Nature. 1989 Jul 20;340(6230):245-6 PMID: 2547163
  6. A new class of yeast transcriptional activators.
    Cell. 1987 Oct 9;51(1):113-9 PMID: 3115591
  7. The metallobiochemistry of zinc enzymes.
    Adv Enzymol Relat Areas Mol Biol. 1984;56:283-430 PMID: 6364704
  8. Regulation of pyrimidine biosynthesis in Saccharomyces cerevisiae.
    J Bacteriol. 1968 Mar;95(3):824-32 PMID: 5651325
  9. The two-hybrid system: a method to identify and clone genes for proteins that interact with a protein of interest.
    Proc Natl Acad Sci U S A. 1991 Nov 1;88(21):9578-82 PMID: 1946372
  10. Rapid and efficient site-specific mutagenesis without phenotypic selection.
    Methods Enzymol. 1987;154:367-82 PMID: 3323813
  11. RNA polymerase II.
    Annu Rev Biochem. 1991;60:689-715 PMID: 1883205
  12. Yeast RNA polymerase C and its subunits. Specific antibodies as structural and functional probes.
    J Biol Chem. 1985 Dec 5;260(28):15304-10 PMID: 3905793
  13. Cloning and identification of the gene coding for the 140-kd subunit of Drosophila RNA polymerase II.
    EMBO J. 1986 Apr;5(4):741-6 PMID: 16453680
  14. Mapping the active site of yeast RNA polymerase B (II).
    J Biol Chem. 1990 Sep 25;265(27):16498-503 PMID: 2204624
  15. RPC53 encodes a subunit of Saccharomyces cerevisiae RNA polymerase C (III) whose inactivation leads to a predominantly G1 arrest.
    Mol Cell Biol. 1992 Oct;12(10):4314-26 PMID: 1406624
  16. Rapid and sensitive sequence comparison with FASTP and FASTA.
    Methods Enzymol. 1990;183:63-98 PMID: 2156132
  17. Determination of lysine residues affinity labeled in the active site of yeast RNA polymerase II(B) by mutagenesis.
    Nucleic Acids Res. 1992 Sep 25;20(18):4721-5 PMID: 1408783
  18. Mutations in the three largest subunits of yeast RNA polymerase II that affect enzyme assembly.
    Mol Cell Biol. 1991 Sep;11(9):4669-78 PMID: 1715023
  19. The ADE2 gene from Saccharomyces cerevisiae: sequence and new vectors.
    Gene. 1990 Oct 30;95(1):91-8 PMID: 2253890
  20. Mitotic stability of yeast chromosomes: a colony color assay that measures nondisjunction and chromosome loss.
    Cell. 1985 Feb;40(2):381-92 PMID: 3967296
  21. Subunits shared by eukaryotic nuclear RNA polymerases.
    Genes Dev. 1990 Mar;4(3):313-23 PMID: 2186966
  22. Functional specialization within the alpha-subunit of Escherichia coli RNA polymerase.
    J Mol Biol. 1991 Sep 5;221(1):23-9 PMID: 1920407
  23. Characterization and mutagenesis of the gene encoding the A49 subunit of RNA polymerase A in Saccharomyces cerevisiae.
    Proc Natl Acad Sci U S A. 1992 Oct 1;89(19):9302-5 PMID: 1409638
  24. Effect of mutations in a zinc-binding domain of yeast RNA polymerase C (III) on enzyme function and subunit association.
    Mol Cell Biol. 1992 Mar;12(3):1087-95 PMID: 1545791
  25. RPC19, the gene for a subunit common to yeast RNA polymerases A (I) and C (III).
    J Biol Chem. 1991 Aug 15;266(23):15300-7 PMID: 1869554
  26. A family of versatile centromeric vectors designed for use in the sectoring-shuffle mutagenesis assay in Saccharomyces cerevisiae.
    Gene. 1988 Oct 30;70(2):303-12 PMID: 3063604
  27. Eukaryotic RNA polymerases.
    CRC Crit Rev Biochem. 1985;18(1):31-90 PMID: 3893883
  28. Centromeric DNA from Saccharomyces cerevisiae.
    J Mol Biol. 1982 Jun 25;158(2):157-90 PMID: 6750136
  29. RPC82 encodes the highly conserved, third-largest subunit of RNA polymerase C (III) from Saccharomyces cerevisiae.
    Mol Cell Biol. 1992 Oct;12(10):4433-40 PMID: 1406632
  30. Prokaryotic and eukaryotic RNA polymerases have homologous core subunits.
    Proc Natl Acad Sci U S A. 1987 Mar;84(5):1192-6 PMID: 3547406
  31. 'DNA Strider': a 'C' program for the fast analysis of DNA and protein sequences on the Apple Macintosh family of computers.
    Nucleic Acids Res. 1988 Mar 11;16(5):1829-36 PMID: 2832831
  32. ABF1 binding sites in yeast RNA polymerase genes.
    J Biol Chem. 1990 Sep 5;265(25):15168-75 PMID: 2203770
  33. RPC10 encodes a new mini subunit shared by yeast nuclear RNA polymerases.
    Gene Expr. 1992;2(1):31-7 PMID: 1617300
  34. Yeast RNA polymerase II subunit RPB9 is essential for growth at temperature extremes.
    J Biol Chem. 1991 Oct 5;266(28):19053-5 PMID: 1918023
  35. Identification of the DNA binding site for NGFI-B by genetic selection in yeast.
    Science. 1991 May 31;252(5010):1296-300 PMID: 1925541
  36. Subunit assembly and metabolic stability of E. coli RNA polymerase.
    Proteins. 1987;2(1):42-53 PMID: 3328858
  37. Extensive homology among the largest subunits of eukaryotic and prokaryotic RNA polymerases.
    Cell. 1985 Sep;42(2):599-610 PMID: 3896517
  38. Alpha: the Cinderella subunit of RNA polymerase.
    J Biol Chem. 1992 Jul 25;267(21):14515-8 PMID: 1634503
  39. Separation and characterization of the subunits of ribonucleic acid polymerase.
    J Biol Chem. 1969 Nov 25;244(22):6168-76 PMID: 4900511
  40. Studies on the functional topography of Escherichia coli RNA polymerase. Highly selective affinity labelling by analogues of initiating substrates.
    Eur J Biochem. 1987 Feb 16;163(1):113-21 PMID: 3545823
  41. A positive selection for mutants lacking orotidine-5'-phosphate decarboxylase activity in yeast: 5-fluoro-orotic acid resistance.
    Mol Gen Genet. 1984;197(2):345-6 PMID: 6394957
  42. RNA polymerase II subunit RPB10 is essential for yeast cell viability.
    J Biol Chem. 1990 Oct 15;265(29):17816-9 PMID: 2211663
  43. Two additional common subunits, ABC10 alpha and ABC10 beta, are shared by yeast RNA polymerases.
    J Biol Chem. 1991 Dec 15;266(35):24092-6 PMID: 1748681
  44. Variation of cofactor levels in Escherichia coli. Sequence analysis and expression of the pncB gene encoding nicotinic acid phosphoribosyltransferase.
    J Biol Chem. 1990 Oct 15;265(29):17665-72 PMID: 2211655
  45. RPC40, a unique gene for a subunit shared between yeast RNA polymerases A and C.
    Cell. 1987 Feb 27;48(4):627-37 PMID: 3815519
  46. RNA polymerase II subunit RPB3 is an essential component of the mRNA transcription apparatus.
    Mol Cell Biol. 1989 Dec;9(12):5387-94 PMID: 2685562
  47. Construction of LYS2 cartridges for use in genetic manipulations of Saccharomyces cerevisiae.
    Gene. 1986;46(2-3):237-45 PMID: 3542721
  48. Sequence analysis of two temperature-sensitive mutations in the alpha subunit gene (rpoA) of Escherichia coli RNA polymerase.
    Nucleic Acids Res. 1990 Oct 25;18(20):5945-8 PMID: 2235479
Article Info
Journal
Proceedings of the National Academy of Sciences of the United States of America
Abbr.
Proc Natl Acad Sci U S A
ISSN
0027-8424
Published
1993-06-15
Pages
5524-8
Language
English
Region
United States
NLM ID
7505876
PMCID
PMC46753
Subset
IM
Databases
GENBANK
L11274, L11275
Analysis Services
Analysis Services

Contact

No. 2 Wenbo Road, Zhangqiu District, Jinan, Shandong

Qilu Normal University · Genelibs Bioinformatics Lab

750 Shunhua Rd, Jinan

2F, Bldg F, University Science Park

Tel: 0531-88819269

WeChat Official Account

Follow our WeChat subscription account for real-time updates and the latest in medical and biological research.


Business Email

E-mail: product@genelibs.com