Home LiteratureArticle Details
PMID: 8444803 Published · ppublish English Journal Article Research Support, Non-U.S. Gov't

Molecular analysis of the 3,6-dideoxyhexose pathway genes of Yersinia pseudotuberculosis serogroup IIA.

Journal of bacteriology ·Vol. 175 ·No. 5 ·1993-03-00 ·Pages 1412-22

Kessler AC, Haase A, Reeves PR

Abstract

Salmonella enterica and Yersinia pseudotuberculosis are the only examples in nature known to use a variety of 3,6-dideoxyhexose derivatives as O antigen constituents. To allow a comparison of the responsible biosynthetic genes of the two organisms, we have sequenced a section of the Y. pseudotuberculosis serogroup IIA rfb region that contained the genes for the abequose biosynthetic pathway. Comparison of the identified genes with the rfb region of S. enterica LT2 showed that the two dideoxyhexose pathway gene clusters are related. The arrangement of the genes was largely conserved, and the G + C compositions of the two DNA regions were strikingly similar; however, the degree of conservation of nucleotide and protein sequences suggested that the two gene clusters have been evolving independently for considerable time. Hybridization experiments showed that the dideoxyhexose pathway genes are widespread throughout the various serogroups of Y. pseudotuberculosis.

MeSH Terms
Amino Acid Sequence Base Composition Base Sequence Codon DNA, Bacterial Genes, Bacterial Hexoses/genetics,metabolism Molecular Sequence Data Multigene Family Open Reading Frames Promoter Regions, Genetic Restriction Mapping Yersinia pseudotuberculosis/genetics,metabolism
Chemicals
Codon DNA, Bacterial Hexoses tyvelose
Authors & Affiliations
3 authors, click to expand affiliations / ORCID
Kessler A C
Department of Microbiology, University of Sydney, New South Wales, Australia.
Haase A
Reeves P R
References (44)
44 references, click to expand
  1. Mechanistic studies of the biosynthesis of 3,6-dideoxyhexoses in Yersinia pseudotuberculosis: purification and characterization of CDP-4-keto-6-deoxy-D-glucose-3-dehydrase.
    Biochemistry. 1992 Feb 25;31(7):2129-39 PMID: 1536853
  2. Cloning of the rfb gene cluster of a group C2 Salmonella strain: comparison with the rfb regions of groups B and D.
    Mol Microbiol. 1991 Aug;5(8):1873-81 PMID: 1722557
  3. Molecular cloning and expression in Escherichia coli K-12 of the rfb gene cluster determining the O antigen of an E. coli O111 strain.
    Mol Microbiol. 1991 Sep;5(9):2223-31 PMID: 1722559
  4. Molecular analysis of a Salmonella enterica group E1 rfb gene cluster: O antigen and the genetic basis of the major polymorphism.
    Genetics. 1992 Mar;130(3):429-43 PMID: 1372579
  5. Cloning and structure of group C1 O antigen (rfb gene cluster) from Salmonella enterica serovar montevideo.
    J Gen Microbiol. 1992 Feb;138(2):305-12 PMID: 1373435
  6. Molecular analysis of the rfb gene cluster of Salmonella serovar muenchen (strain M67): the genetic basis of the polymorphism between groups C2 and B.
    Mol Microbiol. 1992 May;6(10):1385-94 PMID: 1379320
  7. Sequence and structural analysis of the rfb (O antigen) gene cluster from a group C1 Salmonella enterica strain.
    J Gen Microbiol. 1992 Sep;138(9):1843-55 PMID: 1383393
  8. THE BIOSYNTHESIS OF CELL WALL LIPOPOLYSACCHARIDE IN ESCHERICHIA COLI. II. GUANOSINE DIPHOSPHATE 4-KETO-6-DEOXY-D-MANNOSE, AN INTERMEDIATE IN THE BIOSYNTHESIS OF GUANOSINE DIPHOSPHATE COLITOSE.
    J Biol Chem. 1965 May;240:1926-31 PMID: 14299611
  9. Enzymatic synthesis of cytidine diphosphate 3,6-dideoxyhexoses. I. Over-all reactions.
    J Biol Chem. 1966 Sep 25;241(18):4267-74 PMID: 5924648
  10. Extended deletions in the histidine-rough-B region of the Salmonella chromosome.
    Proc Natl Acad Sci U S A. 1967 Jun;57(6):1825-32 PMID: 5231414
  11. Structure of O-specific side chains of lipopolysaccharides from Yersinia pseudotuberculosis.
    J Bacteriol. 1974 Mar;117(3):1010-6 PMID: 4813891
  12. DNA sequencing with chain-terminating inhibitors.
    Proc Natl Acad Sci U S A. 1977 Dec;74(12):5463-7 PMID: 271968
  13. A rapid method for detecting and mapping homology between heterologous DNAs. Evaluation of polyomavirus genomes.
    J Biol Chem. 1979 Jun 10;254(11):4876-83 PMID: 220264
  14. Method to determine the reading frame of a protein from the purine/pyrimidine genome sequence and its possible evolutionary justification.
    Proc Natl Acad Sci U S A. 1981 Mar;78(3):1596-600 PMID: 6940175
  15. Los Alamos sequence analysis package for nucleic acids and proteins.
    Nucleic Acids Res. 1982 Jan 11;10(1):183-96 PMID: 6174934
  16. Characterization of translational initiation sites in E. coli.
    Nucleic Acids Res. 1982 May 11;10(9):2971-96 PMID: 7048258
  17. Automation of the computer handling of gel reading data produced by the shotgun method of DNA sequencing.
    Nucleic Acids Res. 1982 Aug 11;10(15):4731-51 PMID: 7133997
  18. Salmonella typhimurium LT2 strains which are r- m+ for all three chromosomally located systems of DNA restriction and modification.
    J Bacteriol. 1983 Oct;156(1):471-4 PMID: 6352690
  19. A comprehensive set of sequence analysis programs for the VAX.
    Nucleic Acids Res. 1984 Jan 11;12(1 Pt 1):387-95 PMID: 6546423
  20. Computer methods to locate signals in nucleic acid sequences.
    Nucleic Acids Res. 1984 Jan 11;12(1 Pt 2):505-19 PMID: 6364039
  21. Construction of improved M13 vectors using oligodeoxynucleotide-directed mutagenesis.
    Gene. 1983 Dec;26(1):101-6 PMID: 6323249
  22. Unidirectional digestion with exonuclease III creates targeted breakpoints for DNA sequencing.
    Gene. 1984 Jun;28(3):351-9 PMID: 6235151
  23. [Structure of O-specific polysaccharide from Yersinia pseudotuberculosis of serotype VI lipopolysaccharide].
    Bioorg Khim. 1983 Aug;9(8):1068-73 PMID: 6210095
  24. Improved M13 phage cloning vectors and host strains: nucleotide sequences of the M13mp18 and pUC19 vectors.
    Gene. 1985;33(1):103-19 PMID: 2985470
  25. The current status and portability of our sequence handling software.
    Nucleic Acids Res. 1986 Jan 10;14(1):217-31 PMID: 3511446
  26. Methods of multilocus enzyme electrophoresis for bacterial population genetics and systematics.
    Appl Environ Microbiol. 1986 May;51(5):873-84 PMID: 2425735
  27. O-antigen variation in Salmonella spp.: rfb gene clusters of three strains.
    J Bacteriol. 1988 Jan;170(1):103-7 PMID: 2447059
  28. Growth-rate-dependent expression and cloning of gnd alleles from natural isolates of Escherichia coli.
    J Bacteriol. 1988 Jan;170(1):365-71 PMID: 2826398
  29. Production of single-stranded plasmid DNA.
    Methods Enzymol. 1987;153:3-11 PMID: 3323803
  30. Directional mutation pressure and neutral molecular evolution.
    Proc Natl Acad Sci U S A. 1988 Apr;85(8):2653-7 PMID: 3357886
  31. Escherichia coli promoters. II. A spacing class-dependent promoter search protocol.
    J Biol Chem. 1989 Apr 5;264(10):5531-4 PMID: 2647721
  32. Linkage map of Salmonella typhimurium, edition VII.
    Microbiol Rev. 1988 Dec;52(4):485-532 PMID: 3070321
  33. [The structure of the O-specific polysaccharide chain of the lipopolysaccharide of Yersinia pseudotuberculosis serovar VII].
    Bioorg Khim. 1989 Jan;15(1):104-10 PMID: 2472792
  34. Consensus methods for finding and ranking DNA binding sites. Application to Escherichia coli promoters.
    J Mol Biol. 1989 May 20;207(2):301-10 PMID: 2666673
  35. Identification and sequence of the gene for abequose synthase, which confers antigenic specificity on group B salmonellae: homology with galactose epimerase.
    J Bacteriol. 1989 Oct;171(10):5687-93 PMID: 2793832
  36. Identification and sequence of rfbS and rfbE, which determine antigenic specificity of group A and group D salmonellae.
    J Bacteriol. 1989 Oct;171(10):5694-701 PMID: 2793833
  37. Mechanistic studies of the biosynthesis of 3,6-dideoxyhexoses in Yersinia pseudotuberculosis. Purification and characterization of CDP-6-deoxy-delta 3,4-glucoseen reductase based on its NADH:dichlorophenolindolphenol oxidoreductase activity.
    J Biol Chem. 1990 May 15;265(14):8033-41 PMID: 2159466
  38. Linkage map of Escherichia coli K-12, edition 8.
    Microbiol Rev. 1990 Jun;54(2):130-97 PMID: 2194094
  39. A fast and convenient way to produce single stranded DNA from a phagemid.
    Nucleic Acids Res. 1991 Jan 11;19(1):181 PMID: 2011500
  40. Structure and sequence of the rfb (O antigen) gene cluster of Salmonella serovar typhimurium (strain LT2).
    Mol Microbiol. 1991 Mar;5(3):695-713 PMID: 1710759
  41. Isolation and characterization of visible light-sensitive mutants of Escherichia coli K12.
    J Mol Biol. 1991 Jun 5;219(3):393-8 PMID: 2051480
  42. Relationships among the rfb regions of Salmonella serovars A, B, and D.
    J Bacteriol. 1991 Aug;173(15):4814-9 PMID: 1856174
  43. An extended antigenic scheme for Yersinia pseudotuberculosis.
    Contrib Microbiol Immunol. 1991;12:235-8 PMID: 1718658
  44. Molecular cloning and genetic characterization of the rfb region from Yersinia pseudotuberculosis serogroup IIA, which determines the formation of the 3,6-dideoxyhexose abequose.
    J Gen Microbiol. 1991 Dec;137(12):2689-95 PMID: 1724263
Article Info
Journal
Journal of bacteriology
Abbr.
J Bacteriol
ISSN
0021-9193
Published
1993-03-00
Pages
1412-22
Language
English
Region
United States
NLM ID
2985120R
PMCID
PMC193228
Subset
IM
Databases
GENBANK
L01777
Analysis Services
Analysis Services

Contact

No. 2 Wenbo Road, Zhangqiu District, Jinan, Shandong

Qilu Normal University · Genelibs Bioinformatics Lab

750 Shunhua Rd, Jinan

2F, Bldg F, University Science Park

Tel: 0531-88819269

WeChat Official Account

Follow our WeChat subscription account for real-time updates and the latest in medical and biological research.


Business Email

E-mail: product@genelibs.com